Rh5CG436100

Phosphatidylinositol transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0008855
Physical Location & Seq
Forward (+)
60377146 .. 60386638
9493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG436100.1

Sequence Viewer

Length: 822 bp
ATGGTCACAAAGATGCAGCAACAGAACACGAATAGTACGGAAGGAGTGGAAATTTTAGAGAATAAATCCTTTGAAGACGATGTCTTTGGAAAGGGTCAATACACTTCTAAGGTTTATCGTCTACAAAGCAAAGCTCCTACTTGGCTTACAACTTTTGCACCAGCAGATGCACTCATCATGCAAGAGGAAGCCTGGAACGCATACCCAAGATGCAAAACAGGTTTGCCATGTCTTTATCTTTGCCCATACTTCACCAAATTTCAGTTGACCATTGAAACTGTTCATAGGGCTGATAATGGTCAGTCCGAAAATGTACATGGTCTAAGCAAAGAAATATTAGCAGCCAGGGATGTGGAAATTGTTGATATAGCTTCATCTGCAAGGGATTACTGGAGTTACGTGGTTGGTAGTAACAATACAGACTTCTCTAATTTTAAATCAGAGAAGACTGGCCGTGGTCCACTTTTAGAGGGATGGCAGGATACGTCAAGTCCAGTTATGACAGCCTACAAGTTGGTCACCATAGATGCGCCATATTGGGGATTTGGCTATAAACTTGAACAAGCTTTGCTATTGGGTGAAAGGGCTCTTTTCCTTGAAAGTCACCGCAATTGTTTTGCTTGGATAGATGAATGGTTTGGAATGACTATGCAACAGCTACGTGAACTTGATCAACAAAGCGACTCATTAGCTGAGCTGCAGAAACATGGGAGGCCAACTTTGGTGAAGAGCATGGACGATTTTGGCCAGAGATTATCACCCGAAAGTGAAGACATTTATCTTGGCCAGAGGTCTCAACTCTCGACTCAACTATCAACTTAA

Protein Analysis

273

Amino Acids

31.08

Weight (kDa)

4.97

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IP_trans PF02121 1 - 226 1.1e-76 Phosphatidylinositol transfer protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 121
AciI CCGC 1 cut(s) 607
AcoI YGGCCR 3 cut(s) 451, 745, 784
AcsI RAATTY 2 cut(s) 51, 257
AfaI GTAC 2 cut(s) 37, 315
AfiI CCNNNNNNNGG 1 cut(s) 539
AgsI TTSAA 4 cut(s) 74, 275, 560, 599
AjnI CCWGG 2 cut(s) 191, 344
AluBI AGCT 6 cut(s) 134, 371, 566, 658, 692, 697
AluI AGCT 6 cut(s) 134, 371, 566, 658, 692, 697
Alw26I GTCTC 1 cut(s) 798
AoxI GGCC 4 cut(s) 451, 713, 745, 784
ApeKI GCWGC 3 cut(s) 16, 341, 697
ApoI RAATTY 2 cut(s) 51, 257
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
Asp700I GAANNNNTTC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 1 cut(s) 458
AsuHPI GGTGA 6 cut(s) 244, 511, 590, 596, 736, 750
AvaII GGWCC 1 cut(s) 458
BalI TGGCCA 2 cut(s) 747, 786
BanII GRGCYC 1 cut(s) 589
BbsI GAAGAC 3 cut(s) 81, 452, 777
BbvI GCAGC 3 cut(s) 28, 353, 684
BccI CCATC 1 cut(s) 468
BceAI ACGGC 1 cut(s) 438
BciT130I CCWGG 2 cut(s) 193, 346
BciVI GTATCC 1 cut(s) 475
BclI TGATCA 1 cut(s) 670
BcoDI GTCTC 1 cut(s) 798
BfmI CTRYAG 1 cut(s) 698
BfuI GTATCC 1 cut(s) 475
BisI GCNGC 3 cut(s) 17, 342, 698
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 3 cut(s) 18, 343, 699
Bme1390I CCNGG 2 cut(s) 193, 346
Bme18I GGWCC 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 458
BmrFI CCNGG 2 cut(s) 193, 346
BmsI GCATC 4 cut(s) 3, 157, 200, 517
BpiI GAAGAC 3 cut(s) 81, 452, 777
BpmI CTGGAG 1 cut(s) 412
Bpu1102I GCTNAGC 1 cut(s) 693
BsaAI YACGTR 2 cut(s) 400, 662
BsaI GGTCTC 1 cut(s) 798
BsaJI CCNNGG 2 cut(s) 345, 454
Bsc4I CCNNNNNNNGG 1 cut(s) 539
Bse1I ACTGG 3 cut(s) 395, 454, 494
BseBI CCWGG 2 cut(s) 193, 346
BseDI CCNNGG 2 cut(s) 345, 454
BseGI GGATG 2 cut(s) 355, 479
BseLI CCNNNNNNNGG 1 cut(s) 539
BseMII CTCAG 1 cut(s) 684
BseNI ACTGG 3 cut(s) 395, 454, 494
BseXI GCAGC 3 cut(s) 28, 353, 684
BshFI GGCC 4 cut(s) 453, 715, 747, 786
BslI CCNNNNNNNGG 1 cut(s) 539
BsmAI GTCTC 1 cut(s) 798
BsnI GGCC 4 cut(s) 453, 715, 747, 786
Bso31I GGTCTC 1 cut(s) 798
Bsp1286I GDGCHC 1 cut(s) 589
Bsp1407I TGTACA 1 cut(s) 313
Bsp143I GATC 1 cut(s) 670
Bsp1720I GCTNAGC 1 cut(s) 693
BspACI CCGC 1 cut(s) 607
BspANI GGCC 4 cut(s) 453, 715, 747, 786
BspCNI CTCAG 1 cut(s) 685
BspMAI CTGCAG 1 cut(s) 702
BspQI GCTCTTC 1 cut(s) 722
BspTNI GGTCTC 1 cut(s) 798
BsrGI TGTACA 1 cut(s) 313
BsrI ACTGG 3 cut(s) 395, 454, 494
BssECI CCNNGG 2 cut(s) 345, 454
BssMI GATC 1 cut(s) 670
Bst2UI CCWGG 2 cut(s) 193, 346
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 722
BstAUI TGTACA 1 cut(s) 313
BstBAI YACGTR 2 cut(s) 400, 662
BstDEI CTNAG 3 cut(s) 108, 323, 693
BstDSI CCRYGG 1 cut(s) 454
BstEII GGTNACC 1 cut(s) 517
BstF5I GGATG 2 cut(s) 355, 479
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 1 cut(s) 673
BstMAI GTCTC 1 cut(s) 798
BstMBI GATC 1 cut(s) 670
BstMWI GCNNNNNNNGC 2 cut(s) 197, 377
BstNI CCWGG 2 cut(s) 193, 346
BstPI GGTNACC 1 cut(s) 517
BstSCI CCNGG 2 cut(s) 191, 344
BstSFI CTRYAG 1 cut(s) 698
BstV1I GCAGC 3 cut(s) 28, 353, 684
BstV2I GAAGAC 3 cut(s) 81, 452, 777
BstXI CCANNNNNNTGG 1 cut(s) 352
BsuI GTATCC 1 cut(s) 475
BsuRI GGCC 4 cut(s) 453, 715, 747, 786
BtgI CCRYGG 1 cut(s) 454
BtsCI GGATG 2 cut(s) 355, 479
CfoI GCGC 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 458
Csp6I GTAC 2 cut(s) 36, 314
CviAII CATG 5 cut(s) 178, 228, 317, 707, 733
CviQI GTAC 2 cut(s) 36, 314
DdeI CTNAG 3 cut(s) 108, 323, 693
DpnI GATC 1 cut(s) 672
DpnII GATC 1 cut(s) 670
DraI TTTAAA 1 cut(s) 436
EaeI YGGCCR 3 cut(s) 451, 745, 784
Eam1104I CTCTTC 1 cut(s) 722
EarI CTCTTC 1 cut(s) 722
Eco24I GRGCYC 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 798
Eco47I GGWCC 1 cut(s) 458
Eco91I GGTNACC 1 cut(s) 517
EcoO65I GGTNACC 1 cut(s) 517
EcoRII CCWGG 2 cut(s) 191, 344
EcoT38I GRGCYC 1 cut(s) 589
FaeI CATG 5 cut(s) 181, 231, 320, 710, 736
FatI CATG 5 cut(s) 177, 227, 316, 706, 732
FbaI TGATCA 1 cut(s) 670
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 17, 342, 698
FokI GGATG 2 cut(s) 362, 486
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 3 cut(s) 17, 342, 698
GlaI GCGC 1 cut(s) 531
GluI GCNGC 3 cut(s) 17, 342, 698
GsuI CTGGAG 1 cut(s) 412
HaeIII GGCC 4 cut(s) 453, 715, 747, 786
HhaI GCGC 1 cut(s) 532
Hin1II CATG 5 cut(s) 181, 231, 320, 710, 736
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HindIII AAGCTT 1 cut(s) 564
HinfI GANTC 2 cut(s) 683, 805
HphI GGTGA 6 cut(s) 244, 511, 590, 596, 736, 750
Hpy166II GTNNAC 4 cut(s) 122, 267, 461, 665
Hpy188I TCNGA 2 cut(s) 307, 442
Hpy188III TCNNGA 1 cut(s) 802
Hpy8I GTNNAC 4 cut(s) 122, 267, 461, 665
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 3 cut(s) 399, 485, 661
HpyCH4V TGCA 8 cut(s) 16, 158, 170, 181, 213, 380, 652, 700
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 377
HpyF3I CTNAG 3 cut(s) 108, 323, 693
HpySE526I ACGT 3 cut(s) 399, 485, 661
Hsp92II CATG 5 cut(s) 181, 231, 320, 710, 736
HspAI GCGC 1 cut(s) 530
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 1 cut(s) 670
LguI GCTCTTC 1 cut(s) 722
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 3 cut(s) 28, 353, 684
LweI GCATC 4 cut(s) 3, 157, 200, 517
MaeII ACGT 3 cut(s) 399, 485, 661
MaeIII GTNAC 5 cut(s) 4, 395, 410, 517, 602
MalI GATC 1 cut(s) 672
MboI GATC 1 cut(s) 670
MboII GAAGA 4 cut(s) 86, 457, 739, 782
MfeI CAATTG 1 cut(s) 610
MhlI GDGCHC 1 cut(s) 589
MlsI TGGCCA 2 cut(s) 747, 786
MluCI AATT 5 cut(s) 51, 257, 357, 430, 610
MluNI TGGCCA 2 cut(s) 747, 786
MlyI GAGTC 2 cut(s) 677, 799
MnlI CCTC 4 cut(s) 178, 463, 705, 783
Mox20I TGGCCA 2 cut(s) 747, 786
MroXI GAANNNNTTC 1 cut(s) 279
MscI TGGCCA 2 cut(s) 747, 786
MseI TTAA 2 cut(s) 435, 820
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 2 cut(s) 747, 786
MspR9I CCNGG 2 cut(s) 193, 346
MunI CAATTG 1 cut(s) 610
MvaI CCWGG 2 cut(s) 193, 346
MwoI GCNNNNNNNGC 2 cut(s) 197, 377
NdeII GATC 1 cut(s) 670
NlaIII CATG 5 cut(s) 181, 231, 320, 710, 736
NmuCI GTSAC 3 cut(s) 4, 517, 602
PciSI GCTCTTC 1 cut(s) 722
PdmI GAANNNNTTC 1 cut(s) 279
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 18, 343, 699
PleI GAGTC 2 cut(s) 677, 799
PpsI GAGTC 2 cut(s) 677, 799
Ppu21I YACGTR 2 cut(s) 400, 662
Psp6I CCWGG 2 cut(s) 191, 344
PspEI GGTNACC 1 cut(s) 517
PspGI CCWGG 2 cut(s) 191, 344
PspPI GGNCC 1 cut(s) 458
PstI CTGCAG 1 cut(s) 702
PsyI GACNNNGTC 1 cut(s) 80
RsaI GTAC 2 cut(s) 37, 315
RsaNI GTAC 2 cut(s) 36, 314
RseI CAYNNNNRTG 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 722
SaqAI TTAA 2 cut(s) 435, 820
SatI GCNGC 3 cut(s) 17, 342, 698
Sau3AI GATC 1 cut(s) 670
Sau96I GGNCC 1 cut(s) 458
SchI GAGTC 2 cut(s) 677, 799
ScrFI CCNGG 2 cut(s) 193, 346
SduI GDGCHC 1 cut(s) 589
SfaNI GCATC 4 cut(s) 3, 157, 200, 517
SfcI CTRYAG 1 cut(s) 698
SinI GGWCC 1 cut(s) 458
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 5 cut(s) 51, 257, 357, 430, 610
SsiI CCGC 1 cut(s) 607
SspI AATATT 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 191, 344
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 3 cut(s) 402, 488, 664
TaqI TCGA 1 cut(s) 803
TasI AATT 5 cut(s) 51, 257, 357, 430, 610
TatI WGTACW 1 cut(s) 313
Tru1I TTAA 2 cut(s) 435, 820
Tru9I TTAA 2 cut(s) 435, 820
TseFI GTSAC 3 cut(s) 4, 517, 602
TseI GCWGC 3 cut(s) 16, 341, 697
Tsp45I GTSAC 3 cut(s) 4, 517, 602
TspDTI ATGAA 3 cut(s) 272, 363, 645
TspGWI ACGGA 1 cut(s) 53
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 458
XapI RAATTY 2 cut(s) 51, 257
XmiI GTMKAC 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.