Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008855

Physical Location & Seq

Genomic Coordinates Reverse (-)

40699227 .. 40700286

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0335700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAGGAGAACCATCTCAAGAAGAAGAAGCTCAGCATGCTTGATCGAAATGGAGTCGAACCTAGCCCAATAGAGTGTTGGAGGAAGTTCCATGTAAGTAAAGCAAATGACGGAAAAGAAGAACATTGGAAAAGTGACAAGGCTAGGGAAATTTATGATGATCTTACTGAAAAAAAGAATAGAGTGGAAGAGGTGTTTGGTGAAGCTGATGATTGGGAAATATATCAGAAAGTGATTGGTGGGCCTAGTCATGGTCGTGTACTTGGTTTAGGTGCTGGGGTGAAACTAAAAGATTACACTTCACCTAACCAAACTTGTAATAAGCCTACATGTTTGGAACAAAAAGAAGATTATGAAAGAGTGAAAGGCCAAGTTGAATCTCTGACAGATAAATTGGACAAGTTGACTCAAATTGTTCAAAGTTTGCTGCCTAATACCTCAGACAATTCTAAAGCAAGAAACTCACATTCTGTGGACAATATTGCAACAGATTCAAGTGCACATCATGATGAAGATGGTACTGATGAAGATGGTGATGAAGATGTTGCTGGTGAATATGATGCAAACTCTAATGAGGACTTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0008526 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IP_trans

Protein Analysis

195

Amino Acids

22.09

Weight (kDa)

4.93

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33520 FvH4_3g33520
malus_domestica	MD03G1111000.v1.1 MD11G1124900.v1.1
prunus_persica	Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1
pyrus_communis	pycom11g10540
rosa_chinensis	RchiOBHm_Chr5g0060991
rosa_laevigata	RLG00000035418
rosa_multiflora	Rmu_sc0000640.1_g000013
rosa_roxburghii	Rroxscaffold_1G00019660
rosa_rugosa	Rorug05G0335500 Rorug05G0335600 Rorug05G0335700
rosa_samantha	Rh5AG398200 Rh5BG411100 Rh5CG436100 Rh5DG425500
rosa_wichuraiana	Rw5G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	150
AfaI	GTAC	2 cut(s)	261, 520
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	329
AgsI	TTSAA	3 cut(s)	377, 419, 495
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	2 cut(s)	31, 206
AluI	AGCT	2 cut(s)	31, 206
Alw21I	GWGCWC	1 cut(s)	502
Alw44I	GTGCAC	1 cut(s)	498
AoxI	GGCC	2 cut(s)	242, 367
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	5 cut(s)	212, 292, 294, 545, 563
BaeGI	GKGCMC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	3 cut(s)	21, 509, 524
BfaI	CTAG	3 cut(s)	63, 144, 246
BisI	GCNGC	1 cut(s)	428
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	429
BmgT120I	GGNCC	1 cut(s)	242
BmsI	GCATC	1 cut(s)	550
Bpu1102I	GCTNAGC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	46, 453
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	414
BseYI	CCCAGC	1 cut(s)	275
BshFI	GGCC	2 cut(s)	244, 369
BsiHKAI	GWGCWC	1 cut(s)	502
BslI	CCNNNNNNNGG	1 cut(s)	251
BsnI	GGCC	2 cut(s)	244, 369
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	2 cut(s)	43, 160
Bsp1720I	GCTNAGC	1 cut(s)	32
BspANI	GGCC	2 cut(s)	244, 369
BspCNI	CTCAG	2 cut(s)	45, 452
BspHI	TCATGA	1 cut(s)	505
BssMI	GATC	2 cut(s)	43, 160
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	32, 439
BstKTI	GATC	2 cut(s)	46, 163
BstMBI	GATC	2 cut(s)	43, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNSI	RCATGY	2 cut(s)	40, 333
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	244, 369
Cac8I	GCNNGC	1 cut(s)	38
CciI	TCATGA	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	260, 519
CviAII	CATG	5 cut(s)	37, 92, 251, 330, 506
CviJI	RGCY	7 cut(s)	31, 66, 143, 206, 244, 325, 369
CviKI_1	RGCY	7 cut(s)	31, 66, 143, 206, 244, 325, 369
CviQI	GTAC	2 cut(s)	260, 519
DdeI	CTNAG	2 cut(s)	32, 439
DpnI	GATC	2 cut(s)	45, 162
DpnII	GATC	2 cut(s)	43, 160
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
FaeI	CATG	5 cut(s)	40, 95, 254, 333, 509
FaiI	YATR	9 cut(s)	38, 93, 156, 223, 252, 331, 354, 507, 558
FatI	CATG	5 cut(s)	36, 91, 250, 329, 505
Fnu4HI	GCNGC	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	3 cut(s)	63, 144, 246
GluI	GCNGC	1 cut(s)	428
GsaI	CCCAGC	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	244, 369
Hin1II	CATG	5 cut(s)	40, 95, 254, 333, 509
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	4 cut(s)	54, 377, 406, 491
HphI	GGTGA	5 cut(s)	212, 292, 294, 545, 563
Hpy166II	GTNNAC	4 cut(s)	260, 405, 475, 500
Hpy188I	TCNGA	3 cut(s)	228, 384, 442
Hpy188III	TCNNGA	2 cut(s)	19, 506
Hpy8I	GTNNAC	4 cut(s)	260, 405, 475, 500
HpyCH4V	TGCA	3 cut(s)	485, 500, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	2 cut(s)	32, 439
Hsp92II	CATG	5 cut(s)	40, 95, 254, 333, 509
Kzo9I	GATC	2 cut(s)	43, 160
LpnPI	CCDG	2 cut(s)	261, 534
Lsp1109I	GCAGC	1 cut(s)	414
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	3 cut(s)	63, 144, 246
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	2 cut(s)	45, 162
MboI	GATC	2 cut(s)	43, 160
MboII	GAAGA	8 cut(s)	34, 37, 131, 200, 359, 524, 539, 551
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	4 cut(s)	150, 392, 411, 445
MlyI	GAGTC	2 cut(s)	63, 400
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	4 cut(s)	75, 184, 448, 568
MslI	CAYNNNNRTG	2 cut(s)	255, 507
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	2 cut(s)	43, 160
NlaIII	CATG	5 cut(s)	40, 95, 254, 333, 509
NmuCI	GTSAC	1 cut(s)	134
NspI	RCATGY	2 cut(s)	40, 333
PaeI	GCATGC	1 cut(s)	40
PagI	TCATGA	1 cut(s)	505
PciI	ACATGT	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	377, 491
PkrI	GCNGC	1 cut(s)	429
PleI	GAGTC	2 cut(s)	62, 400
PpsI	GAGTC	2 cut(s)	62, 400
PscI	ACATGT	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	242
RsaI	GTAC	2 cut(s)	261, 520
RsaNI	GTAC	2 cut(s)	260, 519
RseI	CAYNNNNRTG	2 cut(s)	255, 507
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	2 cut(s)	43, 160
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	2 cut(s)	63, 400
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	7 cut(s)	33, 64, 195, 208, 274, 307, 440
SfaNI	GCATC	1 cut(s)	550
SmiMI	CAYNNNNRTG	2 cut(s)	255, 507
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SphI	GCATGC	1 cut(s)	40
Sse9I	AATT	4 cut(s)	150, 392, 411, 445
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	3 cut(s)	63, 144, 246
TaqI	TCGA	2 cut(s)	46, 57
TasI	AATT	4 cut(s)	150, 392, 411, 445
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	377, 491
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	5 cut(s)	17, 369, 525, 540, 552
TspGWI	ACGGA	1 cut(s)	126
VneI	GTGCAC	1 cut(s)	498
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	2 cut(s)	40, 333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	75
XspI	CTAG	3 cut(s)	63, 144, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.