Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000640.1

Orthogroup ID

OG0008855

Physical Location & Seq

Genomic Coordinates Reverse (-)

69734 .. 73725

Gene Structure 3992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000640.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggttctgatgaaggagtttcgtattgtgatgcccatgtctctagaagagtatcaagttgctcaggcatatatggtcacaaagatgcagcaacagaacacgaatagtacggaaggagtggaaattttagagaataaatcctttgaagacgatgtctttggaaagggtcaatacacttctaaggtttatcgtctacaaagcaaagctcctacttggcttacaacttttgcaccagcagatgcactcatcatgcaagaggaagcctggaacgcatacccaagatgcaaaacagtaatcaagtgcccatacttcaccaaatttcagttgaccattgaaactgttcatagggctgataatggtcagtccgaaaatgtacatggtctaagcaaagaaatattagcagccagggatgtggaaattgttgatatagcttcatctgcaagggattactggagttacgtggttggtagtaacaatacagacttctctaattttaaatcagagaagactggccgtggtccacttttagagggatggcaggatacgtcaagtccagttatgacagcctacaagttggtcaccatagatgcgccatattggggatttggctataaacttgaacaagctttgctattgggtgaaagggctcttttccttgaaagtcaccgcaattgttttgcttggatagatgaatggtttggaatgactatgcaacagctacgtgaacttgatcaacaaagcgactcattagctgagaaacatgggaggccaactttggtgaagagcatggacgattttggccagagattatcacccgaaagtgaagacatttatcttggccagaggtctcaactctcgactcaactatcaacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0008526 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IP_trans

Protein Analysis

291

Amino Acids

33.31

Weight (kDa)

5.02

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33520 FvH4_3g33520
malus_domestica	MD03G1111000.v1.1 MD11G1124900.v1.1
prunus_persica	Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1
pyrus_communis	pycom11g10540
rosa_chinensis	RchiOBHm_Chr5g0060991
rosa_laevigata	RLG00000035418
rosa_multiflora	Rmu_sc0000640.1_g000013
rosa_roxburghii	Rroxscaffold_1G00019660
rosa_rugosa	Rorug05G0335500 Rorug05G0335600 Rorug05G0335700
rosa_samantha	Rh5AG398200 Rh5BG411100 Rh5CG436100 Rh5DG425500
rosa_wichuraiana	Rw5G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	193
AciI	CCGC	1 cut(s)	667
AcoI	YGGCCR	3 cut(s)	511, 799, 838
AcsI	RAATTY	2 cut(s)	123, 317
AfaI	GTAC	2 cut(s)	109, 375
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	4 cut(s)	146, 335, 620, 659
AjnI	CCWGG	2 cut(s)	263, 404
AluBI	AGCT	5 cut(s)	206, 431, 626, 718, 752
AluI	AGCT	5 cut(s)	206, 431, 626, 718, 752
Alw26I	GTCTC	2 cut(s)	45, 852
AoxI	GGCC	4 cut(s)	511, 767, 799, 838
ApeKI	GCWGC	2 cut(s)	88, 401
ApoI	RAATTY	2 cut(s)	123, 317
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
Asp700I	GAANNNNTTC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	592
AspS9I	GGNCC	1 cut(s)	518
AsuHPI	GGTGA	6 cut(s)	304, 571, 650, 656, 790, 804
AvaII	GGWCC	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	305
BalI	TGGCCA	2 cut(s)	801, 840
BanII	GRGCYC	1 cut(s)	649
BbsI	GAAGAC	3 cut(s)	153, 512, 831
BbvI	GCAGC	2 cut(s)	100, 413
BccI	CCATC	1 cut(s)	528
BceAI	ACGGC	1 cut(s)	498
BciT130I	CCWGG	2 cut(s)	265, 406
BciVI	GTATCC	1 cut(s)	535
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	2 cut(s)	45, 852
BfaI	CTAG	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	535
BisI	GCNGC	2 cut(s)	89, 402
BlsI	GCNGC	2 cut(s)	90, 403
Bme1390I	CCNGG	2 cut(s)	265, 406
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	518
BmrFI	CCNGG	2 cut(s)	265, 406
BmsI	GCATC	5 cut(s)	21, 75, 229, 272, 577
BpiI	GAAGAC	3 cut(s)	153, 512, 831
BpmI	CTGGAG	1 cut(s)	472
Bpu10I	CCTNAGC	1 cut(s)	63
BsaAI	YACGTR	2 cut(s)	460, 722
BsaI	GGTCTC	1 cut(s)	852
BsaJI	CCNNGG	2 cut(s)	405, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse1I	ACTGG	3 cut(s)	455, 514, 554
BseBI	CCWGG	2 cut(s)	265, 406
BseDI	CCNNGG	2 cut(s)	405, 514
BseGI	GGATG	2 cut(s)	415, 539
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMII	CTCAG	2 cut(s)	77, 744
BseNI	ACTGG	3 cut(s)	455, 514, 554
BseSI	GKGCMC	1 cut(s)	305
BseXI	GCAGC	2 cut(s)	100, 413
BshFI	GGCC	4 cut(s)	513, 769, 801, 840
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	2 cut(s)	45, 852
BsnI	GGCC	4 cut(s)	513, 769, 801, 840
Bso31I	GGTCTC	1 cut(s)	852
Bsp1286I	GDGCHC	2 cut(s)	305, 649
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	1 cut(s)	730
BspACI	CCGC	1 cut(s)	667
BspANI	GGCC	4 cut(s)	513, 769, 801, 840
BspCNI	CTCAG	2 cut(s)	76, 745
BspQI	GCTCTTC	1 cut(s)	776
BspTNI	GGTCTC	1 cut(s)	852
BsrGI	TGTACA	1 cut(s)	373
BsrI	ACTGG	3 cut(s)	455, 514, 554
BssECI	CCNNGG	2 cut(s)	405, 514
BssMI	GATC	1 cut(s)	730
Bst2UI	CCWGG	2 cut(s)	265, 406
Bst4CI	ACNGT	2 cut(s)	292, 340
Bst6I	CTCTTC	2 cut(s)	42, 776
BstAUI	TGTACA	1 cut(s)	373
BstBAI	YACGTR	2 cut(s)	460, 722
BstDEI	CTNAG	4 cut(s)	63, 180, 383, 753
BstDSI	CCRYGG	1 cut(s)	514
BstEII	GGTNACC	1 cut(s)	577
BstF5I	GGATG	2 cut(s)	415, 539
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	1 cut(s)	733
BstMAI	GTCTC	2 cut(s)	45, 852
BstMBI	GATC	1 cut(s)	730
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 437
BstNI	CCWGG	2 cut(s)	265, 406
BstPI	GGTNACC	1 cut(s)	577
BstSCI	CCNGG	2 cut(s)	263, 404
BstSLI	GKGCMC	1 cut(s)	305
BstV1I	GCAGC	2 cut(s)	100, 413
BstV2I	GAAGAC	3 cut(s)	153, 512, 831
BstXI	CCANNNNNNTGG	1 cut(s)	412
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	4 cut(s)	513, 769, 801, 840
BtgI	CCRYGG	1 cut(s)	514
BtsCI	GGATG	2 cut(s)	415, 539
CfoI	GCGC	1 cut(s)	592
Cfr13I	GGNCC	1 cut(s)	518
Csp6I	GTAC	2 cut(s)	108, 374
CviAII	CATG	5 cut(s)	37, 250, 377, 761, 787
CviQI	GTAC	2 cut(s)	108, 374
DdeI	CTNAG	4 cut(s)	63, 180, 383, 753
DpnI	GATC	1 cut(s)	732
DpnII	GATC	1 cut(s)	730
DraI	TTTAAA	1 cut(s)	496
EaeI	YGGCCR	3 cut(s)	511, 799, 838
Eam1104I	CTCTTC	2 cut(s)	42, 776
EarI	CTCTTC	2 cut(s)	42, 776
Eco24I	GRGCYC	1 cut(s)	649
Eco31I	GGTCTC	1 cut(s)	852
Eco47I	GGWCC	1 cut(s)	518
Eco91I	GGTNACC	1 cut(s)	577
EcoO65I	GGTNACC	1 cut(s)	577
EcoRII	CCWGG	2 cut(s)	263, 404
EcoT38I	GRGCYC	1 cut(s)	649
FaeI	CATG	5 cut(s)	40, 253, 380, 764, 790
FatI	CATG	5 cut(s)	36, 249, 376, 760, 786
FbaI	TGATCA	1 cut(s)	730
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	89, 402
FokI	GGATG	2 cut(s)	422, 546
FriOI	GRGCYC	1 cut(s)	649
Fsp4HI	GCNGC	2 cut(s)	89, 402
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	1 cut(s)	591
GluI	GCNGC	2 cut(s)	89, 402
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	4 cut(s)	513, 769, 801, 840
HhaI	GCGC	1 cut(s)	592
Hin1II	CATG	5 cut(s)	40, 253, 380, 764, 790
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	2 cut(s)	743, 859
HphI	GGTGA	6 cut(s)	304, 571, 650, 656, 790, 804
Hpy166II	GTNNAC	4 cut(s)	194, 327, 521, 725
Hpy188I	TCNGA	3 cut(s)	9, 367, 502
Hpy188III	TCNNGA	2 cut(s)	44, 856
Hpy8I	GTNNAC	4 cut(s)	194, 327, 521, 725
HpyAV	CCTTC	2 cut(s)	7, 107
HpyCH4III	ACNGT	2 cut(s)	292, 340
HpyCH4IV	ACGT	3 cut(s)	459, 545, 721
HpyCH4V	TGCA	7 cut(s)	88, 230, 242, 253, 285, 440, 712
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 437
HpyF3I	CTNAG	4 cut(s)	63, 180, 383, 753
HpySE526I	ACGT	3 cut(s)	459, 545, 721
Hsp92II	CATG	5 cut(s)	40, 253, 380, 764, 790
HspAI	GCGC	1 cut(s)	590
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	1 cut(s)	730
LguI	GCTCTTC	1 cut(s)	776
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	2 cut(s)	100, 413
LweI	GCATC	5 cut(s)	21, 75, 229, 272, 577
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	3 cut(s)	459, 545, 721
MaeIII	GTNAC	5 cut(s)	76, 455, 470, 577, 662
MalI	GATC	1 cut(s)	732
MboI	GATC	1 cut(s)	730
MboII	GAAGA	5 cut(s)	59, 158, 517, 793, 836
MfeI	CAATTG	1 cut(s)	670
MhlI	GDGCHC	2 cut(s)	305, 649
MlsI	TGGCCA	2 cut(s)	801, 840
MluCI	AATT	5 cut(s)	123, 317, 417, 490, 670
MluNI	TGGCCA	2 cut(s)	801, 840
MlyI	GAGTC	2 cut(s)	737, 853
MnlI	CCTC	4 cut(s)	250, 523, 759, 837
Mox20I	TGGCCA	2 cut(s)	801, 840
MroXI	GAANNNNTTC	1 cut(s)	339
MscI	TGGCCA	2 cut(s)	801, 840
MseI	TTAA	2 cut(s)	495, 874
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	2 cut(s)	801, 840
MspR9I	CCNGG	2 cut(s)	265, 406
MunI	CAATTG	1 cut(s)	670
MvaI	CCWGG	2 cut(s)	265, 406
MwoI	GCNNNNNNNGC	2 cut(s)	269, 437
NdeII	GATC	1 cut(s)	730
NlaIII	CATG	5 cut(s)	40, 253, 380, 764, 790
NmuCI	GTSAC	3 cut(s)	76, 577, 662
PciSI	GCTCTTC	1 cut(s)	776
PdmI	GAANNNNTTC	1 cut(s)	339
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	90, 403
PleI	GAGTC	2 cut(s)	737, 853
PpsI	GAGTC	2 cut(s)	737, 853
Ppu21I	YACGTR	2 cut(s)	460, 722
Psp6I	CCWGG	2 cut(s)	263, 404
PspEI	GGTNACC	1 cut(s)	577
PspGI	CCWGG	2 cut(s)	263, 404
PspPI	GGNCC	1 cut(s)	518
PsyI	GACNNNGTC	1 cut(s)	152
RsaI	GTAC	2 cut(s)	109, 375
RsaNI	GTAC	2 cut(s)	108, 374
RseI	CAYNNNNRTG	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	776
SaqAI	TTAA	2 cut(s)	495, 874
SatI	GCNGC	2 cut(s)	89, 402
Sau3AI	GATC	1 cut(s)	730
Sau96I	GGNCC	1 cut(s)	518
SchI	GAGTC	2 cut(s)	737, 853
ScrFI	CCNGG	2 cut(s)	265, 406
SduI	GDGCHC	2 cut(s)	305, 649
SfaNI	GCATC	5 cut(s)	21, 75, 229, 272, 577
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	5 cut(s)	123, 317, 417, 490, 670
SsiI	CCGC	1 cut(s)	667
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	263, 404
TaaI	ACNGT	2 cut(s)	292, 340
TaiI	ACGT	3 cut(s)	462, 548, 724
TaqI	TCGA	1 cut(s)	857
TasI	AATT	5 cut(s)	123, 317, 417, 490, 670
TatI	WGTACW	1 cut(s)	373
Tru1I	TTAA	2 cut(s)	495, 874
Tru9I	TTAA	2 cut(s)	495, 874
TseFI	GTSAC	3 cut(s)	76, 577, 662
TseI	GCWGC	2 cut(s)	88, 401
Tsp45I	GTSAC	3 cut(s)	76, 577, 662
TspDTI	ATGAA	4 cut(s)	26, 332, 423, 705
TspGWI	ACGGA	1 cut(s)	125
Tth111I	GACNNNGTC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	2 cut(s)	123, 317
XbaI	TCTAGA	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.