Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008855

Physical Location & Seq

Genomic Coordinates Reverse (-)

8966020 .. 8969636

Gene Structure 3617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g10540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTTCTGATGAAGGAGTTTCGTATTGTCATGCCCGTGTCATTGGAAGAGTATCAAGTAGCCCAGACGTACATGGTCATGAAGATGCAGAAACAGAACACAACCAGTACCGAAGGGGTGGAAATAGTAGAGAGTAGACCCTTTGAAGATGATGTATTTGGAAAGGGTCACTACAGTTCTAAAATTTATCGTCTACAAAGCAAAGCTCCTGGTTGGCTTACCACTTTTGCACCAGCAGAAGCTCTCATCTTGCAAGAGGAAGCCTGGAACGCATACCCAAGATGCAAAACAGTAATTAAGTGCCCATACTTCACCAAGTTTCAGCTGACCGTCGAAACTGTTCACAGAGCTGACAAGGGCCATTCGGATAATGTTCACGGTCTAAGCAAAGCACAATTAACAACTAGGGATGTGGAAATTGTTGATATTGCTTCATCAGCAAGAGATTACTGGAGTTACATAGTTGGCACTAACAACACGGACTTATCCCAATTTACATCAGCAAAAACTGGACGTGGTCCACTTTTAGAGGAATGGCAGGATAAGTCGGATCCAGTTATGACAGCCTACAAACTGGTCACCATTGATGCACCATATTGGGGTTTTGGCAATAAACTTGAACAAGCTTTGCTATTGGGTGAAAGGGCTCTTTTCATAGAAAGCCATCGGAATTGTTTTTCTTGGATCGATGAATGGTTTGGAATGACAGTTGAACAGATACGTGAAAGTGAACGACATAGAAACTCAGAGACCAAGGAACTTGGGAGGCCACCTTTGGTGAAGAGTCTAGAAGATTTTGACCAGAGATTATTACCTGAAAGTGAAGAAATTTATAGCGGGCAGAGAGCTCAACTTTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0008526 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IP_trans

Protein Analysis

288

Amino Acids

33.01

Weight (kDa)

5.41

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IP_trans	PF02121	2 - 246	9.2e-91	Phosphatidylinositol transfer protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33520 FvH4_3g33520
malus_domestica	MD03G1111000.v1.1 MD11G1124900.v1.1
prunus_persica	Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1
pyrus_communis	pycom11g10540
rosa_chinensis	RchiOBHm_Chr5g0060991
rosa_laevigata	RLG00000035418
rosa_multiflora	Rmu_sc0000640.1_g000013
rosa_roxburghii	Rroxscaffold_1G00019660
rosa_rugosa	Rorug05G0335500 Rorug05G0335600 Rorug05G0335700
rosa_samantha	Rh5AG398200 Rh5BG411100 Rh5CG436100 Rh5DG425500
rosa_wichuraiana	Rw5G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	136, 193
AciI	CCGC	1 cut(s)	837
AclWI	GGATC	3 cut(s)	545, 558, 692
AcsI	RAATTY	2 cut(s)	183, 828
AfaI	GTAC	2 cut(s)	71, 109
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	4 cut(s)	146, 620, 713, 858
AjiI	CACGTC	1 cut(s)	515
AjnI	CCWGG	2 cut(s)	208, 263
AluBI	AGCT	6 cut(s)	206, 242, 325, 350, 626, 848
AluI	AGCT	6 cut(s)	206, 242, 325, 350, 626, 848
Alw21I	GWGCWC	1 cut(s)	850
Alw26I	GTCTC	1 cut(s)	743
AlwI	GGATC	3 cut(s)	545, 558, 692
AoxI	GGCC	2 cut(s)	358, 767
ApoI	RAATTY	2 cut(s)	183, 828
Asp700I	GAANNNNTTC	1 cut(s)	339
AspS9I	GGNCC	2 cut(s)	358, 518
AsuHPI	GGTGA	4 cut(s)	304, 571, 650, 790
AvaII	GGWCC	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	550
BanII	GRGCYC	2 cut(s)	649, 850
Bbv12I	GWGCWC	1 cut(s)	850
BccI	CCATC	1 cut(s)	672
BciT130I	CCWGG	2 cut(s)	210, 265
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	2 cut(s)	405, 788
BfmI	CTRYAG	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	210, 265
Bme18I	GGWCC	1 cut(s)	518
BmgBI	CACGTC	1 cut(s)	515
BmgT120I	GGNCC	2 cut(s)	358, 518
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	2 cut(s)	210, 265
BmsI	GCATC	3 cut(s)	75, 272, 577
BpmI	CTGGAG	1 cut(s)	472
Bsa29I	ATCGAT	1 cut(s)	687
BsaAI	YACGTR	1 cut(s)	722
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	1 cut(s)	753
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse1I	ACTGG	5 cut(s)	105, 455, 514, 554, 579
BseBI	CCWGG	2 cut(s)	210, 265
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMII	CTCAG	1 cut(s)	759
BseNI	ACTGG	5 cut(s)	105, 455, 514, 554, 579
BseSI	GKGCMC	1 cut(s)	305
BshFI	GGCC	2 cut(s)	360, 769
BshVI	ATCGAT	1 cut(s)	687
BsiHKAI	GWGCWC	1 cut(s)	850
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	1 cut(s)	743
BsnI	GGCC	2 cut(s)	360, 769
Bso31I	GGTCTC	1 cut(s)	743
Bsp1286I	GDGCHC	3 cut(s)	305, 649, 850
Bsp143I	GATC	2 cut(s)	550, 684
BspACI	CCGC	1 cut(s)	837
BspANI	GGCC	2 cut(s)	360, 769
BspCNI	CTCAG	1 cut(s)	758
BspDI	ATCGAT	1 cut(s)	687
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	552
BspPI	GGATC	3 cut(s)	545, 558, 692
BspTNI	GGTCTC	1 cut(s)	743
BsrI	ACTGG	5 cut(s)	105, 455, 514, 554, 579
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	2 cut(s)	550, 684
BssT1I	CCWWGG	1 cut(s)	753
Bst2UI	CCWGG	2 cut(s)	210, 265
Bst4CI	ACNGT	6 cut(s)	176, 292, 331, 340, 380, 709
Bst6I	CTCTTC	2 cut(s)	42, 776
BstBAI	YACGTR	1 cut(s)	722
BstC8I	GCNNGC	1 cut(s)	839
BstDEI	CTNAG	2 cut(s)	383, 745
BstEII	GGTNACC	1 cut(s)	577
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	2 cut(s)	553, 687
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	2 cut(s)	550, 684
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 437
BstNI	CCWGG	2 cut(s)	210, 265
BstPI	GGTNACC	1 cut(s)	577
BstSCI	CCNGG	2 cut(s)	208, 263
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
Bsu15I	ATCGAT	1 cut(s)	687
BsuRI	GGCC	2 cut(s)	360, 769
BsuTUI	ATCGAT	1 cut(s)	687
BtrI	CACGTC	1 cut(s)	515
BtsCI	GGATG	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	839
CciI	TCATGA	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	358, 518
ClaI	ATCGAT	1 cut(s)	687
Csp6I	GTAC	2 cut(s)	70, 108
CviAII	CATG	3 cut(s)	31, 73, 79
CviQI	GTAC	2 cut(s)	70, 108
DdeI	CTNAG	2 cut(s)	383, 745
DpnI	GATC	2 cut(s)	552, 686
DpnII	GATC	2 cut(s)	550, 684
Eam1104I	CTCTTC	2 cut(s)	42, 776
EarI	CTCTTC	2 cut(s)	42, 776
Ecl136II	GAGCTC	1 cut(s)	848
Eco130I	CCWWGG	1 cut(s)	753
Eco24I	GRGCYC	2 cut(s)	649, 850
Eco31I	GGTCTC	1 cut(s)	743
Eco47I	GGWCC	1 cut(s)	518
Eco53kI	GAGCTC	1 cut(s)	848
Eco91I	GGTNACC	1 cut(s)	577
EcoICRI	GAGCTC	1 cut(s)	848
EcoO65I	GGTNACC	1 cut(s)	577
EcoRII	CCWGG	2 cut(s)	208, 263
EcoT14I	CCWWGG	1 cut(s)	753
EcoT38I	GRGCYC	2 cut(s)	649, 850
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	3 cut(s)	34, 76, 82
FatI	CATG	3 cut(s)	30, 72, 78
FauI	CCCGC	1 cut(s)	830
FblI	GTMKAC	2 cut(s)	136, 193
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	2 cut(s)	649, 850
FspBI	CTAG	2 cut(s)	405, 788
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	2 cut(s)	360, 769
Hin1II	CATG	3 cut(s)	34, 76, 82
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	1 cut(s)	784
HphI	GGTGA	4 cut(s)	304, 571, 650, 790
Hpy166II	GTNNAC	6 cut(s)	137, 194, 343, 376, 521, 731
Hpy188I	TCNGA	5 cut(s)	9, 367, 550, 669, 748
Hpy188III	TCNNGA	2 cut(s)	79, 788
Hpy8I	GTNNAC	6 cut(s)	137, 194, 343, 376, 521, 731
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	2 cut(s)	7, 107
HpyCH4III	ACNGT	6 cut(s)	176, 292, 331, 340, 380, 709
HpyCH4IV	ACGT	3 cut(s)	68, 514, 721
HpyCH4V	TGCA	5 cut(s)	88, 230, 253, 285, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 437
HpyF3I	CTNAG	2 cut(s)	383, 745
HpySE526I	ACGT	3 cut(s)	68, 514, 721
Hsp92II	CATG	3 cut(s)	34, 76, 82
Kzo9I	GATC	2 cut(s)	550, 684
LmnI	GCTCC	1 cut(s)	211
LweI	GCATC	3 cut(s)	75, 272, 577
MaeI	CTAG	2 cut(s)	405, 788
MaeII	ACGT	3 cut(s)	68, 514, 721
MaeIII	GTNAC	3 cut(s)	167, 455, 577
MalI	GATC	2 cut(s)	552, 686
MboI	GATC	2 cut(s)	550, 684
MboII	GAAGA	6 cut(s)	59, 94, 158, 793, 803, 836
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	3 cut(s)	305, 649, 850
MluCI	AATT	7 cut(s)	183, 294, 395, 417, 491, 670, 828
MlyI	GAGTC	1 cut(s)	793
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	3 cut(s)	250, 523, 759
MroXI	GAANNNNTTC	1 cut(s)	339
MseI	TTAA	3 cut(s)	297, 398, 862
MslI	CAYNNNNRTG	3 cut(s)	35, 77, 83
MspA1I	CMGCKG	1 cut(s)	325
MspR9I	CCNGG	2 cut(s)	210, 265
MvaI	CCWGG	2 cut(s)	210, 265
MwoI	GCNNNNNNNGC	2 cut(s)	269, 437
NdeII	GATC	2 cut(s)	550, 684
NlaIII	CATG	3 cut(s)	34, 76, 82
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	2 cut(s)	167, 577
PagI	TCATGA	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	339
PflFI	GACNNNGTC	1 cut(s)	516
PleI	GAGTC	1 cut(s)	792
PpsI	GAGTC	1 cut(s)	792
Ppu21I	YACGTR	1 cut(s)	722
Psp124BI	GAGCTC	1 cut(s)	850
Psp6I	CCWGG	2 cut(s)	208, 263
PspEI	GGTNACC	1 cut(s)	577
PspGI	CCWGG	2 cut(s)	208, 263
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	2 cut(s)	358, 518
PsuI	RGATCY	1 cut(s)	550
PsyI	GACNNNGTC	1 cut(s)	516
PvuII	CAGCTG	1 cut(s)	325
RsaI	GTAC	2 cut(s)	71, 109
RsaNI	GTAC	2 cut(s)	70, 108
RseI	CAYNNNNRTG	3 cut(s)	35, 77, 83
SacI	GAGCTC	1 cut(s)	850
SaqAI	TTAA	3 cut(s)	297, 398, 862
Sau3AI	GATC	2 cut(s)	550, 684
Sau96I	GGNCC	2 cut(s)	358, 518
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	2 cut(s)	210, 265
SduI	GDGCHC	3 cut(s)	305, 649, 850
SfaNI	GCATC	3 cut(s)	75, 272, 577
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	3 cut(s)	35, 77, 83
Sse9I	AATT	7 cut(s)	183, 294, 395, 417, 491, 670, 828
SsiI	CCGC	1 cut(s)	837
SspMI	CTAG	2 cut(s)	405, 788
SstI	GAGCTC	1 cut(s)	850
StyD4I	CCNGG	2 cut(s)	208, 263
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	6 cut(s)	176, 292, 331, 340, 380, 709
TaiI	ACGT	3 cut(s)	71, 517, 724
TaqI	TCGA	2 cut(s)	333, 687
TasI	AATT	7 cut(s)	183, 294, 395, 417, 491, 670, 828
Tru1I	TTAA	3 cut(s)	297, 398, 862
Tru9I	TTAA	3 cut(s)	297, 398, 862
TseFI	GTSAC	2 cut(s)	167, 577
Tsp45I	GTSAC	2 cut(s)	167, 577
TspDTI	ATGAA	5 cut(s)	26, 95, 423, 643, 705
TspGWI	ACGGA	1 cut(s)	494
Tth111I	GACNNNGTC	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	2 cut(s)	183, 828
XbaI	TCTAGA	1 cut(s)	787
XmiI	GTMKAC	2 cut(s)	136, 193
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	2 cut(s)	405, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.