RchiOBHm_Chr5g0060991

Phosphatidylinositol transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008855
Physical Location & Seq
Forward (+)
66299722 .. 66304450
4729 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33739

Sequence Viewer

Length: 879 bp
ATGGTTCTGATGAAGGAGTTTCGTATTGTGATGCCCATGTCTCTAGAAGAGTATCAAGTTGCTCAGGCATACATGGTCACAAAGATGCAGCAACAGAACACGAATAGTACGGAAGGGGTGGAAATTTTAGAGAATAAATCCTTTGAAGATGATGTCTTTGGAAAGGGTCAATACACTTCTAAGGTTTATCGTCTACAAAGCAAAGCTCCTACTTGGCTTACAACTTTTGCACCAGCAGATGCACTCATCATGCAAGAGGAAGCCTGGAACGCATACCCAAGATGCAAAACAGTAATCAAGTGCCCATACTTCACCAAATTTCAGTTGACCATTGAAACTGTTCATAGGGCTGATAATGGTCAGTCCGAAAATGTACATGGTTTAAGCAAAGAAATATTAGCAGCCAGGGATGTGGAAATTGTTGATATAGCTTCATCTGCAAGGGATTACTGGAGTTACGTGGTTGGTAGTAACAATACAGACTTCTCTAATTTTAAATCAGAGAAGACTGGCCGTGGTCCACTTTTAGAGGGATGGCAGGATACGTCAAGTCCAGTTATGACAGCCTACAAGTTGGTCACCATAGATGCGCCATATTGGGGATTTGGCTATAAACTTGAACAAGCTTTGCTATTGGGTGAAAGGGCTCTTTTCCTTGAAAGTCACCGCAATTGTTTTGCTTGGATAGATGAATGGTTTGGAATGACTATGCAACAGCTACGTGAACTTGATCAACAAAGCGACTCATTAGCTGAGAAACATGGGAGGCCAACTTTGTTGGTGAAGAGCATGGACGATTTTGGCCAGAGATTATCACCCGAAAGTGAAGACATTTATCTTGGCCAGAGGTCTCAACTCTCGACTCAACTATCAACTTAA

Protein Analysis

292

Amino Acids

33.42

Weight (kDa)

5.02

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IP_trans PF02121 2 - 246 2.6e-94 Phosphatidylinositol transfer protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 193
AciI CCGC 1 cut(s) 667
AcoI YGGCCR 3 cut(s) 511, 802, 841
AcsI RAATTY 2 cut(s) 123, 317
AfaI GTAC 2 cut(s) 109, 375
AfiI CCNNNNNNNGG 1 cut(s) 599
AgsI TTSAA 4 cut(s) 146, 335, 620, 659
AjnI CCWGG 2 cut(s) 263, 404
AluBI AGCT 5 cut(s) 206, 431, 626, 718, 752
AluI AGCT 5 cut(s) 206, 431, 626, 718, 752
Alw26I GTCTC 2 cut(s) 45, 855
AoxI GGCC 4 cut(s) 511, 767, 802, 841
ApeKI GCWGC 2 cut(s) 88, 401
ApoI RAATTY 2 cut(s) 123, 317
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 518
AsuHPI GGTGA 6 cut(s) 304, 571, 650, 656, 793, 807
AvaII GGWCC 1 cut(s) 518
BaeGI GKGCMC 1 cut(s) 305
BalI TGGCCA 2 cut(s) 804, 843
BanII GRGCYC 1 cut(s) 649
BbsI GAAGAC 2 cut(s) 512, 834
BbvI GCAGC 2 cut(s) 100, 413
BccI CCATC 1 cut(s) 528
BceAI ACGGC 1 cut(s) 498
BciT130I CCWGG 2 cut(s) 265, 406
BciVI GTATCC 1 cut(s) 535
BclI TGATCA 1 cut(s) 730
BcoDI GTCTC 2 cut(s) 45, 855
BfaI CTAG 1 cut(s) 44
BfuI GTATCC 1 cut(s) 535
BisI GCNGC 2 cut(s) 89, 402
BlsI GCNGC 2 cut(s) 90, 403
Bme1390I CCNGG 2 cut(s) 265, 406
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 518
BmrFI CCNGG 2 cut(s) 265, 406
BmsI GCATC 5 cut(s) 21, 75, 229, 272, 577
BpiI GAAGAC 2 cut(s) 512, 834
BpmI CTGGAG 1 cut(s) 472
Bpu10I CCTNAGC 1 cut(s) 63
BsaAI YACGTR 2 cut(s) 460, 722
BsaI GGTCTC 1 cut(s) 855
BsaJI CCNNGG 2 cut(s) 405, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 599
Bse1I ACTGG 3 cut(s) 455, 514, 554
BseBI CCWGG 2 cut(s) 265, 406
BseDI CCNNGG 2 cut(s) 405, 514
BseGI GGATG 2 cut(s) 415, 539
BseLI CCNNNNNNNGG 1 cut(s) 599
BseMII CTCAG 2 cut(s) 77, 744
BseNI ACTGG 3 cut(s) 455, 514, 554
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 2 cut(s) 100, 413
BshFI GGCC 4 cut(s) 513, 769, 804, 843
BslI CCNNNNNNNGG 1 cut(s) 599
BsmAI GTCTC 2 cut(s) 45, 855
BsnI GGCC 4 cut(s) 513, 769, 804, 843
Bso31I GGTCTC 1 cut(s) 855
Bsp1286I GDGCHC 2 cut(s) 305, 649
Bsp1407I TGTACA 1 cut(s) 373
Bsp143I GATC 1 cut(s) 730
BspACI CCGC 1 cut(s) 667
BspANI GGCC 4 cut(s) 513, 769, 804, 843
BspCNI CTCAG 2 cut(s) 76, 745
BspQI GCTCTTC 1 cut(s) 779
BspTNI GGTCTC 1 cut(s) 855
BsrGI TGTACA 1 cut(s) 373
BsrI ACTGG 3 cut(s) 455, 514, 554
BssECI CCNNGG 2 cut(s) 405, 514
BssMI GATC 1 cut(s) 730
Bst2UI CCWGG 2 cut(s) 265, 406
Bst4CI ACNGT 2 cut(s) 292, 340
Bst6I CTCTTC 2 cut(s) 42, 779
BstAUI TGTACA 1 cut(s) 373
BstBAI YACGTR 2 cut(s) 460, 722
BstDEI CTNAG 3 cut(s) 63, 180, 753
BstDSI CCRYGG 1 cut(s) 514
BstEII GGTNACC 1 cut(s) 577
BstF5I GGATG 2 cut(s) 415, 539
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 1 cut(s) 733
BstMAI GTCTC 2 cut(s) 45, 855
BstMBI GATC 1 cut(s) 730
BstMWI GCNNNNNNNGC 2 cut(s) 269, 437
BstNI CCWGG 2 cut(s) 265, 406
BstPI GGTNACC 1 cut(s) 577
BstSCI CCNGG 2 cut(s) 263, 404
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 2 cut(s) 100, 413
BstV2I GAAGAC 2 cut(s) 512, 834
BstXI CCANNNNNNTGG 1 cut(s) 412
BsuI GTATCC 1 cut(s) 535
BsuRI GGCC 4 cut(s) 513, 769, 804, 843
BtgI CCRYGG 1 cut(s) 514
BtsCI GGATG 2 cut(s) 415, 539
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 518
Csp6I GTAC 2 cut(s) 108, 374
CviAII CATG 6 cut(s) 37, 73, 250, 377, 761, 790
CviQI GTAC 2 cut(s) 108, 374
DdeI CTNAG 3 cut(s) 63, 180, 753
DpnI GATC 1 cut(s) 732
DpnII GATC 1 cut(s) 730
DraI TTTAAA 1 cut(s) 496
EaeI YGGCCR 3 cut(s) 511, 802, 841
Eam1104I CTCTTC 2 cut(s) 42, 779
EarI CTCTTC 2 cut(s) 42, 779
Eco24I GRGCYC 1 cut(s) 649
Eco31I GGTCTC 1 cut(s) 855
Eco47I GGWCC 1 cut(s) 518
Eco91I GGTNACC 1 cut(s) 577
EcoO65I GGTNACC 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 263, 404
EcoT38I GRGCYC 1 cut(s) 649
FaeI CATG 6 cut(s) 40, 76, 253, 380, 764, 793
FatI CATG 6 cut(s) 36, 72, 249, 376, 760, 789
FbaI TGATCA 1 cut(s) 730
FblI GTMKAC 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 89, 402
FokI GGATG 2 cut(s) 422, 546
FriOI GRGCYC 1 cut(s) 649
Fsp4HI GCNGC 2 cut(s) 89, 402
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 591
GluI GCNGC 2 cut(s) 89, 402
GsuI CTGGAG 1 cut(s) 472
HaeIII GGCC 4 cut(s) 513, 769, 804, 843
HhaI GCGC 1 cut(s) 592
Hin1II CATG 6 cut(s) 40, 76, 253, 380, 764, 793
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 2 cut(s) 743, 862
HphI GGTGA 6 cut(s) 304, 571, 650, 656, 793, 807
Hpy166II GTNNAC 4 cut(s) 194, 327, 521, 725
Hpy188I TCNGA 3 cut(s) 9, 367, 502
Hpy188III TCNNGA 2 cut(s) 44, 859
Hpy8I GTNNAC 4 cut(s) 194, 327, 521, 725
HpyAV CCTTC 2 cut(s) 7, 107
HpyCH4III ACNGT 2 cut(s) 292, 340
HpyCH4IV ACGT 3 cut(s) 459, 545, 721
HpyCH4V TGCA 7 cut(s) 88, 230, 242, 253, 285, 440, 712
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 437
HpyF3I CTNAG 3 cut(s) 63, 180, 753
HpySE526I ACGT 3 cut(s) 459, 545, 721
Hsp92II CATG 6 cut(s) 40, 76, 253, 380, 764, 793
HspAI GCGC 1 cut(s) 590
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 1 cut(s) 730
LguI GCTCTTC 1 cut(s) 779
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 2 cut(s) 100, 413
LweI GCATC 5 cut(s) 21, 75, 229, 272, 577
MaeI CTAG 1 cut(s) 44
MaeII ACGT 3 cut(s) 459, 545, 721
MaeIII GTNAC 5 cut(s) 76, 455, 470, 577, 662
MalI GATC 1 cut(s) 732
MboI GATC 1 cut(s) 730
MboII GAAGA 5 cut(s) 59, 158, 517, 796, 839
MfeI CAATTG 1 cut(s) 670
MhlI GDGCHC 2 cut(s) 305, 649
MlsI TGGCCA 2 cut(s) 804, 843
MluCI AATT 5 cut(s) 123, 317, 417, 490, 670
MluNI TGGCCA 2 cut(s) 804, 843
MlyI GAGTC 2 cut(s) 737, 856
MnlI CCTC 4 cut(s) 250, 523, 759, 840
Mox20I TGGCCA 2 cut(s) 804, 843
MroXI GAANNNNTTC 1 cut(s) 339
MscI TGGCCA 2 cut(s) 804, 843
MseI TTAA 3 cut(s) 383, 495, 877
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 2 cut(s) 804, 843
MspR9I CCNGG 2 cut(s) 265, 406
MunI CAATTG 1 cut(s) 670
MvaI CCWGG 2 cut(s) 265, 406
MwoI GCNNNNNNNGC 2 cut(s) 269, 437
NdeII GATC 1 cut(s) 730
NlaIII CATG 6 cut(s) 40, 76, 253, 380, 764, 793
NmuCI GTSAC 3 cut(s) 76, 577, 662
PciSI GCTCTTC 1 cut(s) 779
PdmI GAANNNNTTC 1 cut(s) 339
PkrI GCNGC 2 cut(s) 90, 403
PleI GAGTC 2 cut(s) 737, 856
PpsI GAGTC 2 cut(s) 737, 856
Ppu21I YACGTR 2 cut(s) 460, 722
Psp6I CCWGG 2 cut(s) 263, 404
PspEI GGTNACC 1 cut(s) 577
PspGI CCWGG 2 cut(s) 263, 404
PspPI GGNCC 1 cut(s) 518
RsaI GTAC 2 cut(s) 109, 375
RsaNI GTAC 2 cut(s) 108, 374
RseI CAYNNNNRTG 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 779
SaqAI TTAA 3 cut(s) 383, 495, 877
SatI GCNGC 2 cut(s) 89, 402
Sau3AI GATC 1 cut(s) 730
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 2 cut(s) 737, 856
ScrFI CCNGG 2 cut(s) 265, 406
SduI GDGCHC 2 cut(s) 305, 649
SfaNI GCATC 5 cut(s) 21, 75, 229, 272, 577
SinI GGWCC 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 5 cut(s) 123, 317, 417, 490, 670
SsiI CCGC 1 cut(s) 667
SspI AATATT 1 cut(s) 396
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 2 cut(s) 263, 404
TaaI ACNGT 2 cut(s) 292, 340
TaiI ACGT 3 cut(s) 462, 548, 724
TaqI TCGA 1 cut(s) 860
TasI AATT 5 cut(s) 123, 317, 417, 490, 670
TatI WGTACW 1 cut(s) 373
Tru1I TTAA 3 cut(s) 383, 495, 877
Tru9I TTAA 3 cut(s) 383, 495, 877
TseFI GTSAC 3 cut(s) 76, 577, 662
TseI GCWGC 2 cut(s) 88, 401
Tsp45I GTSAC 3 cut(s) 76, 577, 662
TspDTI ATGAA 4 cut(s) 26, 332, 423, 705
TspGWI ACGGA 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 2 cut(s) 123, 317
XbaI TCTAGA 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.