Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008855

Physical Location & Seq

Genomic Coordinates Forward (+)

40694084 .. 40694482

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0335600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGATGGGAGCTCGAAAAGGGACTATTATCAACACGGCTAGCGTTTGCTCGATCATAAGGGGTGGCGCGTCTCATGCGTACACGAGTTTGAAGCATGGAGTCGTGGGGCTCACGAAGAACATGGCGGTGGAGCTCGGACAGTACGGAATACGTGTGAATTCTGTGTCACCGTATTTGGTGGAGACGTCGTTGAGCAAGAACTACTTTAAGCGTGACGATGAGGGCATCAATGGTGTTTACTCTAACCTTAAAGGGGCGGTGCTGAAGGTAGAAGATGTGGCGGAGGCTGTTCTTTACTTGGAGAGTGATGACTCCAAATATGTTAGTGGGCATAATTTGATAGTAGATGGAGGCTTGACAATAGAGTACCCAAGGTTCTGTATGTTTGAGCAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0008526 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IP_trans

Protein Analysis

132

Amino Acids

14.33

Weight (kDa)

6.27

Isoelectric Point (pI)

18.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	1 - 70	4.7e-16	short chain dehydrogenase
adh_short_C2	PF13561	4 - 120	4.3e-29	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33520 FvH4_3g33520
malus_domestica	MD03G1111000.v1.1 MD11G1124900.v1.1
prunus_persica	Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1
pyrus_communis	pycom11g10540
rosa_chinensis	RchiOBHm_Chr5g0060991
rosa_laevigata	RLG00000035418
rosa_multiflora	Rmu_sc0000640.1_g000013
rosa_roxburghii	Rroxscaffold_1G00019660
rosa_rugosa	Rorug05G0335500 Rorug05G0335600 Rorug05G0335700
rosa_samantha	Rh5AG398200 Rh5BG411100 Rh5CG436100 Rh5DG425500
rosa_wichuraiana	Rw5G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	188
AccII	CGCG	1 cut(s)	68
AciI	CCGC	3 cut(s)	125, 257, 281
AcsI	RAATTY	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	3 cut(s)	80, 143, 368
AfiI	CCNNNNNNNGG	1 cut(s)	253
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	91
AluBI	AGCT	2 cut(s)	11, 133
AluI	AGCT	2 cut(s)	11, 133
Alw21I	GWGCWC	2 cut(s)	13, 135
Alw26I	GTCTC	2 cut(s)	75, 176
ApoI	RAATTY	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	159
AsuNHI	GCTAGC	1 cut(s)	38
BanII	GRGCYC	3 cut(s)	13, 111, 135
BauI	CACGAG	1 cut(s)	82
Bbv12I	GWGCWC	2 cut(s)	13, 135
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	75, 176
BfaI	CTAG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	234
BmtI	GCTAGC	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	371
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	371
BseLI	CCNNNNNNNGG	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	68
BsiHKAI	GWGCWC	2 cut(s)	13, 135
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	2 cut(s)	75, 176
BsmBI	CGTCTC	2 cut(s)	75, 176
BsmFI	GGGAC	1 cut(s)	34
Bsp1286I	GDGCHC	3 cut(s)	13, 111, 135
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	3 cut(s)	125, 257, 281
BspFNI	CGCG	1 cut(s)	68
BspOI	GCTAGC	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	185
BssSI	CACGAG	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	82
Bst4CI	ACNGT	2 cut(s)	141, 171
BstACI	GRCGYC	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	2 cut(s)	75, 176
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstUI	CGCG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	68
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	3 cut(s)	79, 142, 367
CviAII	CATG	3 cut(s)	74, 95, 121
CviJI	RGCY	6 cut(s)	11, 38, 109, 133, 287, 354
CviKI_1	RGCY	6 cut(s)	11, 38, 109, 133, 287, 354
CviQI	GTAC	3 cut(s)	79, 142, 367
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	296
Ecl136II	GAGCTC	2 cut(s)	11, 133
Eco130I	CCWWGG	1 cut(s)	371
Eco24I	GRGCYC	3 cut(s)	13, 111, 135
Eco53kI	GAGCTC	2 cut(s)	11, 133
Eco57I	CTGAAG	1 cut(s)	284
EcoICRI	GAGCTC	2 cut(s)	11, 133
EcoRI	GAATTC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	371
EcoT38I	GRGCYC	3 cut(s)	13, 111, 135
ErhI	CCWWGG	1 cut(s)	371
Esp3I	CGTCTC	2 cut(s)	75, 176
FaeI	CATG	3 cut(s)	77, 98, 124
FaiI	YATR	7 cut(s)	56, 75, 96, 122, 321, 333, 383
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	3 cut(s)	73, 94, 120
FriOI	GRGCYC	3 cut(s)	13, 111, 135
FspBI	CTAG	1 cut(s)	39
GlaI	GCGC	1 cut(s)	67
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	77, 98, 124
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	99, 311
HphI	GGTGA	1 cut(s)	159
Hpy166II	GTNNAC	2 cut(s)	81, 238
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	81, 238
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	2 cut(s)	141, 171
HpyCH4IV	ACGT	2 cut(s)	151, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	2 cut(s)	151, 185
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	77, 98, 124
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	8, 130
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	2 cut(s)	151, 185
MaeIII	GTNAC	2 cut(s)	165, 212
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	2 cut(s)	127, 284
MhlI	GDGCHC	3 cut(s)	13, 111, 135
MluCI	AATT	2 cut(s)	157, 334
MlyI	GAGTC	2 cut(s)	108, 305
MnlI	CCTC	3 cut(s)	214, 277, 344
MseI	TTAA	2 cut(s)	207, 249
MslI	CAYNNNNRTG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	1 cut(s)	51
NheI	GCTAGC	1 cut(s)	38
NlaIII	CATG	3 cut(s)	77, 98, 124
NmuCI	GTSAC	2 cut(s)	165, 212
PleI	GAGTC	2 cut(s)	107, 305
PpsI	GAGTC	2 cut(s)	107, 305
Ppu21I	YACGTR	1 cut(s)	152
Psp124BI	GAGCTC	2 cut(s)	13, 135
PsrI	GAACNNNNNNTAC	2 cut(s)	359, 391
RsaI	GTAC	3 cut(s)	80, 143, 368
RsaNI	GTAC	3 cut(s)	79, 142, 367
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	2 cut(s)	13, 135
SaqAI	TTAA	2 cut(s)	207, 249
Sau3AI	GATC	1 cut(s)	51
SchI	GAGTC	2 cut(s)	108, 305
SduI	GDGCHC	3 cut(s)	13, 111, 135
SetI	ASST	7 cut(s)	13, 135, 154, 188, 249, 270, 377
SfaNI	GCATC	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	157, 334
SsiI	CCGC	3 cut(s)	125, 257, 281
SspMI	CTAG	1 cut(s)	39
SstI	GAGCTC	2 cut(s)	13, 135
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	2 cut(s)	141, 171
TaiI	ACGT	2 cut(s)	154, 188
TaqI	TCGA	2 cut(s)	13, 50
TasI	AATT	2 cut(s)	157, 334
Tru1I	TTAA	2 cut(s)	207, 249
Tru9I	TTAA	2 cut(s)	207, 249
TseFI	GTSAC	2 cut(s)	165, 212
Tsp45I	GTSAC	2 cut(s)	165, 212
TspGWI	ACGGA	1 cut(s)	159
XapI	RAATTY	1 cut(s)	157
XspI	CTAG	1 cut(s)	39
ZraI	GACGTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.