Rh5AG398200

Phosphatidylinositol transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0008855
Physical Location & Seq
Forward (+)
69020038 .. 69030373
10336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG398200.1

Sequence Viewer

Length: 810 bp
ATGGTCACAAAGATGCAGCAACAGAACACGAATAGTACGGAAGGGGTGGAAATTTTAGAGAATAAATCCTTTGAAGACGATGTCTTTGGAAAGGGTCAATACACTTCTAAGGTTTATCGTCTACAAAGCAAAGCTCCTACTTGGCTTACAACTTTTGCACCAGCAGATGCACTCATCATGCAAGAGGAAGCCTGGAACGCATACCCAAGATGCAAAACAGTAATCAAGTGCCCATACTTCACCAAATTTCAGTTGACCATTGAAACTGTTCATAGGGCTGATAATGGTCAGTCCGAAAATGTACATGGTCTAAGCAAAGAAATATTAGCAGCCAGGGATGTGGAAATTGTTGATATAGCTTCATCTGCAAGGGATTACTGGAGTTACGTGGTTGGTAGTAACAATACAGACTTCTCTAATTTTAAATCAGAGAAGACTGGCCGTGGTCCACTTTTAGAGGGATGGCAGGATACGTCAAGTCCAGTTATGACAGCCTACAAGTTGGTCACCATAGATGCGCCATATTGGGGATTTGGCTATAAACTTGAACAAGCTTTGCTATTGGGTGAAAGGGCTCTTTTCCTTGAAAGTCACCGCAATTGTTTTGCTTGGATAGATGAATGGTTTGGAATGACTATGCAACAGCTACGTGAACTTGATCAACAAAGCAACTCATTAGCTGAGCTGCAGAAACATGGGAGGCCAACTTTGGTGAAGAGCATGGACGATTTTGGCCAGAGATTATCACCCGAAAGTGAAGACATTTATCTTGGCCAGAGGTCTCAACTCTCGACTCAACTATCAACTTAA

Protein Analysis

269

Amino Acids

30.66

Weight (kDa)

5.14

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IP_trans PF02121 1 - 223 5.4e-80 Phosphatidylinositol transfer protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 121
AciI CCGC 1 cut(s) 595
AcoI YGGCCR 3 cut(s) 439, 733, 772
AcsI RAATTY 2 cut(s) 51, 245
AfaI GTAC 2 cut(s) 37, 303
AfiI CCNNNNNNNGG 1 cut(s) 527
AgsI TTSAA 4 cut(s) 74, 263, 548, 587
AjnI CCWGG 2 cut(s) 191, 332
AluBI AGCT 6 cut(s) 134, 359, 554, 646, 680, 685
AluI AGCT 6 cut(s) 134, 359, 554, 646, 680, 685
Alw26I GTCTC 1 cut(s) 786
AoxI GGCC 4 cut(s) 439, 701, 733, 772
ApeKI GCWGC 3 cut(s) 16, 329, 685
ApoI RAATTY 2 cut(s) 51, 245
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
Asp700I GAANNNNTTC 1 cut(s) 267
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 6 cut(s) 232, 499, 578, 584, 724, 738
AvaII GGWCC 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 233
BalI TGGCCA 2 cut(s) 735, 774
BanII GRGCYC 1 cut(s) 577
BbsI GAAGAC 3 cut(s) 81, 440, 765
BbvI GCAGC 3 cut(s) 28, 341, 672
BccI CCATC 1 cut(s) 456
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 2 cut(s) 193, 334
BciVI GTATCC 1 cut(s) 463
BclI TGATCA 1 cut(s) 658
BcoDI GTCTC 1 cut(s) 786
BfmI CTRYAG 1 cut(s) 686
BfuI GTATCC 1 cut(s) 463
BisI GCNGC 3 cut(s) 17, 330, 686
BlpI GCTNAGC 1 cut(s) 681
BlsI GCNGC 3 cut(s) 18, 331, 687
Bme1390I CCNGG 2 cut(s) 193, 334
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 446
BmrFI CCNGG 2 cut(s) 193, 334
BmsI GCATC 4 cut(s) 3, 157, 200, 505
BpiI GAAGAC 3 cut(s) 81, 440, 765
BpmI CTGGAG 1 cut(s) 400
Bpu1102I GCTNAGC 1 cut(s) 681
BsaAI YACGTR 2 cut(s) 388, 650
BsaI GGTCTC 1 cut(s) 786
BsaJI CCNNGG 2 cut(s) 333, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse1I ACTGG 3 cut(s) 383, 442, 482
BseBI CCWGG 2 cut(s) 193, 334
BseDI CCNNGG 2 cut(s) 333, 442
BseGI GGATG 2 cut(s) 343, 467
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 3 cut(s) 383, 442, 482
BseSI GKGCMC 1 cut(s) 233
BseXI GCAGC 3 cut(s) 28, 341, 672
BshFI GGCC 4 cut(s) 441, 703, 735, 774
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 1 cut(s) 786
BsnI GGCC 4 cut(s) 441, 703, 735, 774
Bso31I GGTCTC 1 cut(s) 786
Bsp1286I GDGCHC 2 cut(s) 233, 577
Bsp1407I TGTACA 1 cut(s) 301
Bsp143I GATC 1 cut(s) 658
Bsp1720I GCTNAGC 1 cut(s) 681
BspACI CCGC 1 cut(s) 595
BspANI GGCC 4 cut(s) 441, 703, 735, 774
BspCNI CTCAG 1 cut(s) 673
BspMAI CTGCAG 1 cut(s) 690
BspQI GCTCTTC 1 cut(s) 710
BspTNI GGTCTC 1 cut(s) 786
BsrGI TGTACA 1 cut(s) 301
BsrI ACTGG 3 cut(s) 383, 442, 482
BssECI CCNNGG 2 cut(s) 333, 442
BssMI GATC 1 cut(s) 658
Bst2UI CCWGG 2 cut(s) 193, 334
Bst4CI ACNGT 2 cut(s) 220, 268
Bst6I CTCTTC 1 cut(s) 710
BstAUI TGTACA 1 cut(s) 301
BstBAI YACGTR 2 cut(s) 388, 650
BstDEI CTNAG 3 cut(s) 108, 311, 681
BstDSI CCRYGG 1 cut(s) 442
BstEII GGTNACC 1 cut(s) 505
BstF5I GGATG 2 cut(s) 343, 467
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 1 cut(s) 661
BstMAI GTCTC 1 cut(s) 786
BstMBI GATC 1 cut(s) 658
BstMWI GCNNNNNNNGC 2 cut(s) 197, 365
BstNI CCWGG 2 cut(s) 193, 334
BstPI GGTNACC 1 cut(s) 505
BstSCI CCNGG 2 cut(s) 191, 332
BstSFI CTRYAG 1 cut(s) 686
BstSLI GKGCMC 1 cut(s) 233
BstV1I GCAGC 3 cut(s) 28, 341, 672
BstV2I GAAGAC 3 cut(s) 81, 440, 765
BstXI CCANNNNNNTGG 1 cut(s) 340
BsuI GTATCC 1 cut(s) 463
BsuRI GGCC 4 cut(s) 441, 703, 735, 774
BtgI CCRYGG 1 cut(s) 442
BtsCI GGATG 2 cut(s) 343, 467
CfoI GCGC 1 cut(s) 520
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 36, 302
CviAII CATG 4 cut(s) 178, 305, 695, 721
CviQI GTAC 2 cut(s) 36, 302
DdeI CTNAG 3 cut(s) 108, 311, 681
DpnI GATC 1 cut(s) 660
DpnII GATC 1 cut(s) 658
DraI TTTAAA 1 cut(s) 424
EaeI YGGCCR 3 cut(s) 439, 733, 772
Eam1104I CTCTTC 1 cut(s) 710
EarI CTCTTC 1 cut(s) 710
Eco24I GRGCYC 1 cut(s) 577
Eco31I GGTCTC 1 cut(s) 786
Eco47I GGWCC 1 cut(s) 446
Eco91I GGTNACC 1 cut(s) 505
EcoO65I GGTNACC 1 cut(s) 505
EcoRII CCWGG 2 cut(s) 191, 332
EcoT38I GRGCYC 1 cut(s) 577
FaeI CATG 4 cut(s) 181, 308, 698, 724
FatI CATG 4 cut(s) 177, 304, 694, 720
FbaI TGATCA 1 cut(s) 658
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 17, 330, 686
FokI GGATG 2 cut(s) 350, 474
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 3 cut(s) 17, 330, 686
GlaI GCGC 1 cut(s) 519
GluI GCNGC 3 cut(s) 17, 330, 686
GsuI CTGGAG 1 cut(s) 400
HaeIII GGCC 4 cut(s) 441, 703, 735, 774
HhaI GCGC 1 cut(s) 520
Hin1II CATG 4 cut(s) 181, 308, 698, 724
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 1 cut(s) 793
HphI GGTGA 6 cut(s) 232, 499, 578, 584, 724, 738
Hpy166II GTNNAC 4 cut(s) 122, 255, 449, 653
Hpy188I TCNGA 2 cut(s) 295, 430
Hpy188III TCNNGA 1 cut(s) 790
Hpy8I GTNNAC 4 cut(s) 122, 255, 449, 653
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 2 cut(s) 220, 268
HpyCH4IV ACGT 3 cut(s) 387, 473, 649
HpyCH4V TGCA 8 cut(s) 16, 158, 170, 181, 213, 368, 640, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 365
HpyF3I CTNAG 3 cut(s) 108, 311, 681
HpySE526I ACGT 3 cut(s) 387, 473, 649
Hsp92II CATG 4 cut(s) 181, 308, 698, 724
HspAI GCGC 1 cut(s) 518
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 1 cut(s) 658
LguI GCTCTTC 1 cut(s) 710
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 3 cut(s) 28, 341, 672
LweI GCATC 4 cut(s) 3, 157, 200, 505
MaeII ACGT 3 cut(s) 387, 473, 649
MaeIII GTNAC 5 cut(s) 4, 383, 398, 505, 590
MalI GATC 1 cut(s) 660
MboI GATC 1 cut(s) 658
MboII GAAGA 4 cut(s) 86, 445, 727, 770
MfeI CAATTG 1 cut(s) 598
MhlI GDGCHC 2 cut(s) 233, 577
MlsI TGGCCA 2 cut(s) 735, 774
MluCI AATT 5 cut(s) 51, 245, 345, 418, 598
MluNI TGGCCA 2 cut(s) 735, 774
MlyI GAGTC 1 cut(s) 787
MnlI CCTC 4 cut(s) 178, 451, 693, 771
Mox20I TGGCCA 2 cut(s) 735, 774
MroXI GAANNNNTTC 1 cut(s) 267
MscI TGGCCA 2 cut(s) 735, 774
MseI TTAA 2 cut(s) 423, 808
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 2 cut(s) 735, 774
MspR9I CCNGG 2 cut(s) 193, 334
MunI CAATTG 1 cut(s) 598
MvaI CCWGG 2 cut(s) 193, 334
MwoI GCNNNNNNNGC 2 cut(s) 197, 365
NdeII GATC 1 cut(s) 658
NlaIII CATG 4 cut(s) 181, 308, 698, 724
NmuCI GTSAC 3 cut(s) 4, 505, 590
PciSI GCTCTTC 1 cut(s) 710
PdmI GAANNNNTTC 1 cut(s) 267
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 18, 331, 687
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
Ppu21I YACGTR 2 cut(s) 388, 650
Psp6I CCWGG 2 cut(s) 191, 332
PspEI GGTNACC 1 cut(s) 505
PspGI CCWGG 2 cut(s) 191, 332
PspPI GGNCC 1 cut(s) 446
PstI CTGCAG 1 cut(s) 690
PsyI GACNNNGTC 1 cut(s) 80
RsaI GTAC 2 cut(s) 37, 303
RsaNI GTAC 2 cut(s) 36, 302
RseI CAYNNNNRTG 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 710
SaqAI TTAA 2 cut(s) 423, 808
SatI GCNGC 3 cut(s) 17, 330, 686
Sau3AI GATC 1 cut(s) 658
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 1 cut(s) 787
ScrFI CCNGG 2 cut(s) 193, 334
SduI GDGCHC 2 cut(s) 233, 577
SfaNI GCATC 4 cut(s) 3, 157, 200, 505
SfcI CTRYAG 1 cut(s) 686
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 5 cut(s) 51, 245, 345, 418, 598
SsiI CCGC 1 cut(s) 595
SspI AATATT 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 191, 332
TaaI ACNGT 2 cut(s) 220, 268
TaiI ACGT 3 cut(s) 390, 476, 652
TaqI TCGA 1 cut(s) 791
TasI AATT 5 cut(s) 51, 245, 345, 418, 598
TatI WGTACW 1 cut(s) 301
Tru1I TTAA 2 cut(s) 423, 808
Tru9I TTAA 2 cut(s) 423, 808
TseFI GTSAC 3 cut(s) 4, 505, 590
TseI GCWGC 3 cut(s) 16, 329, 685
Tsp45I GTSAC 3 cut(s) 4, 505, 590
TspDTI ATGAA 3 cut(s) 260, 351, 633
TspGWI ACGGA 1 cut(s) 53
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 446
XapI RAATTY 2 cut(s) 51, 245
XmiI GTMKAC 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.