Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008855

Physical Location & Seq

Genomic Coordinates Forward (+)

40693087 .. 40694022

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0335500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGACTTATGTTGTCCCTTCGGTGGAGAGGACATGGAATGGGTTAATCCTGCAGGTCAGGGTAATTGTGGCTGAAGTTGAGGGCATCAATATGCTTGAAGGTAAGGTAGCAGTGATTACCGGCGGAGCCAGTGGCATCGGAGAATCCATCACCAGACTCTTCTCCAGACACAGCACTAAAGTCGTGATCGTCAGCGTGCAAGACGACTTGGGCCAATCCGTTTCCAGAGACTTGAACCCTTCCTCCACGACCTTCGTCCATTGTGACGTGATGAACGAAAAAGATATCGAAAACGTCGTGAACACGGCCACGGCCAAGTATGAAAAGCTAGACATTATGTTCAACAACGCCGGCATCAGCGACGTGGTCAAGCCGAACATCCTCGACAACAACAAGCTAGGCCGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0008526 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IP_trans

Protein Analysis

136

Amino Acids

14.85

Weight (kDa)

5.32

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	35 - 124	5e-19	short chain dehydrogenase
KR	PF08659	37 - 120	8.1e-06	KR domain
adh_short_C2	PF13561	43 - 130	2.5e-16	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33520 FvH4_3g33520
malus_domestica	MD03G1111000.v1.1 MD11G1124900.v1.1
prunus_persica	Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1
pyrus_communis	pycom11g10540
rosa_chinensis	RchiOBHm_Chr5g0060991
rosa_laevigata	RLG00000035418
rosa_multiflora	Rmu_sc0000640.1_g000013
rosa_roxburghii	Rroxscaffold_1G00019660
rosa_rugosa	Rorug05G0335500 Rorug05G0335600 Rorug05G0335700
rosa_samantha	Rh5AG398200 Rh5BG411100 Rh5CG436100 Rh5DG425500
rosa_wichuraiana	Rw5G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	1 cut(s)	123
AcoI	YGGCCR	2 cut(s)	306, 312
AcuI	CTGAAG	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	98, 235, 343
AjiI	CACGTC	2 cut(s)	268, 364
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	2 cut(s)	328, 397
AluI	AGCT	2 cut(s)	328, 397
Alw26I	GTCTC	1 cut(s)	222
AoxI	GGCC	4 cut(s)	211, 306, 312, 400
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	142
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	2 cut(s)	321, 327
BcgI	CGANNNNNNTGC	2 cut(s)	163, 197
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	2 cut(s)	329, 398
BfmI	CTRYAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	43
BmgBI	CACGTC	2 cut(s)	268, 364
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	3 cut(s)	93, 144, 363
BoxI	GACNNNNGTC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	309
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	2 cut(s)	119, 350
Bse1I	ACTGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	129
BshFI	GGCC	4 cut(s)	213, 308, 314, 402
BsiSI	CCGG	2 cut(s)	120, 351
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	222
BsnI	GGCC	4 cut(s)	213, 308, 314, 402
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	4 cut(s)	213, 308, 314, 402
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	43
BsrFI	RCCGGY	2 cut(s)	119, 350
BsrI	ACTGG	1 cut(s)	129
BssAI	RCCGGY	2 cut(s)	119, 350
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	197, 352
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	378
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	186
BstPAI	GACNNNNGTC	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	50
BsuRI	GGCC	4 cut(s)	213, 308, 314, 402
BtgI	CCRYGG	1 cut(s)	309
BtrI	CACGTC	2 cut(s)	268, 364
BtsCI	GGATG	1 cut(s)	378
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	117, 136
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	197, 352
Cfr10I	RCCGGY	2 cut(s)	119, 350
Cfr13I	GGNCC	1 cut(s)	211
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	9 cut(s)	71, 128, 213, 308, 314, 328, 373, 397, 402
CviKI_1	RGCY	9 cut(s)	71, 128, 213, 308, 314, 328, 373, 397, 402
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
EaeI	YGGCCR	2 cut(s)	306, 312
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	93
EcoRV	GATATC	1 cut(s)	286
FaeI	CATG	1 cut(s)	36
FaiI	YATR	5 cut(s)	9, 34, 92, 321, 338
FatI	CATG	1 cut(s)	32
FokI	GGATG	1 cut(s)	365
FspBI	CTAG	2 cut(s)	329, 398
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	4 cut(s)	213, 308, 314, 402
HapII	CCGG	2 cut(s)	120, 351
Hin1II	CATG	1 cut(s)	36
HinfI	GANTC	2 cut(s)	143, 156
HpaII	CCGG	2 cut(s)	120, 351
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	4 cut(s)	165, 184, 225, 298
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	2 cut(s)	299, 365
HpyAV	CCTTC	4 cut(s)	27, 92, 249, 262
HpyCH4IV	ACGT	3 cut(s)	267, 294, 363
HpyCH4V	TGCA	2 cut(s)	52, 199
HpySE526I	ACGT	3 cut(s)	267, 294, 363
Hsp92II	CATG	1 cut(s)	36
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	9 cut(s)	38, 43, 62, 133, 142, 166, 178, 238, 364
LweI	GCATC	3 cut(s)	93, 144, 363
MaeI	CTAG	2 cut(s)	329, 398
MaeII	ACGT	3 cut(s)	267, 294, 363
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	1 cut(s)	151
MluCI	AATT	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	150
MnlI	CCTC	4 cut(s)	21, 73, 253, 392
MroNI	GCCGGC	1 cut(s)	350
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	2 cut(s)	120, 351
NaeI	GCCGGC	1 cut(s)	352
NdeII	GATC	1 cut(s)	186
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 294
PdiI	GCCGGC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	143
PflFI	GACNNNGTC	1 cut(s)	365
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PshAI	GACNNNNGTC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	54
PsyI	GACNNNGTC	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	1 cut(s)	211
SbfI	CCTGCAGG	1 cut(s)	54
SchI	GAGTC	1 cut(s)	150
SdaI	CCTGCAGG	1 cut(s)	54
SetI	ASST	9 cut(s)	57, 103, 108, 254, 270, 297, 330, 366, 399
SfaNI	GCATC	3 cut(s)	93, 144, 363
SfcI	CTRYAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse8387I	CCTGCAGG	1 cut(s)	54
Sse9I	AATT	1 cut(s)	63
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	2 cut(s)	329, 398
TaiI	ACGT	3 cut(s)	270, 297, 366
TaqI	TCGA	2 cut(s)	288, 384
TasI	AATT	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	2 cut(s)	117, 136
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	287, 336
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	2 cut(s)	117, 136
Tth111I	GACNNNGTC	1 cut(s)	365
XspI	CTAG	2 cut(s)	329, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.