Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008855

Physical Location & Seq

Genomic Coordinates Reverse (-)

6448989 .. 6455686

Gene Structure 6698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G093600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTTCTGATGAAGGAATTTCGGATTGTGATGCCCATGTCGTTGGAAGAGTATCAAGTAGCGCAGATGTACATGGTTAGGAAGATGCAGCAACAGAACACGACCAGTACTGAAGGGGTTGAAATATTGGAGAACAAATCCTTTGAAGATGATGTTATTGGAAAGGGCCACTACTCTTCCAAAATTTACCGTCTACAAAGCAAAGCTCCTACTTGGCTCACCACTTTTGCACCGGCAGATGCTCTCATCATGCAAGAGGAAGCCTGGAACGCATACCCAAGATGCAAAACAGTAATCAAGTGCCCATACTTTACCAAGTTTCAGCTGACCATTGAAACAGTTCACAGGGCTGACAATGGGCAGTCAGATAATGTGCATGGTCTAAGTAAAGGACAACTAGCAACCAGGGATGTGGAAATTGTTGATATTGCTTCGTCTGCAAGGGATTACTGGAGTTACGTCGTTAGCAGTAGCAACACAGACTTATCCAAATTTACGTCAGCGAAAACTGGCCGTGGTCCACTTTTAGAGGGATGGCAGGATAAGTCAAAGCCAGTTATGACAGCCTACAAACTCGTCACTATTGATGCACCATATTGGGGTTTTGGCTATAGAATTGAAAACGCTTTGCTACTGGGTGAACGGGCTCTTTTCCTAGAAAGTCACCGGAATTGTTTTGCTTGGATCGATGAATGGTTTGGGTTGACAGTGGAACAGATACGTGAACTTGAACAACAAAGTGACTCATTGAAGGAGGAACTTGGGAGGCCGACTTTGGTAAAAAGTGTGGAAGATTTCGACCAGAGATTATTACCAGAAAGTGAAGATATTTATAGTGGGCAGAGAGCTCAACTCTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0008526 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IP_trans

Protein Analysis

288

Amino Acids

32.92

Weight (kDa)

5.21

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33520 FvH4_3g33520
malus_domestica	MD03G1111000.v1.1 MD11G1124900.v1.1
prunus_persica	Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1
pyrus_communis	pycom11g10540
rosa_chinensis	RchiOBHm_Chr5g0060991
rosa_laevigata	RLG00000035418
rosa_multiflora	Rmu_sc0000640.1_g000013
rosa_roxburghii	Rroxscaffold_1G00019660
rosa_rugosa	Rorug05G0335500 Rorug05G0335600 Rorug05G0335700
rosa_samantha	Rh5AG398200 Rh5BG411100 Rh5CG436100 Rh5DG425500
rosa_wichuraiana	Rw5G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	692
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	3 cut(s)	17, 183, 491
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	2 cut(s)	71, 109
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	6 cut(s)	122, 146, 335, 620, 731, 751
AjnI	CCWGG	2 cut(s)	263, 404
AluBI	AGCT	3 cut(s)	206, 325, 848
AluI	AGCT	3 cut(s)	206, 325, 848
Alw21I	GWGCWC	1 cut(s)	850
AlwI	GGATC	1 cut(s)	692
AoxI	GGCC	3 cut(s)	166, 511, 767
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	3 cut(s)	17, 183, 491
Asp700I	GAANNNNTTC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	166, 518
AsuHPI	GGTGA	3 cut(s)	211, 650, 656
AvaII	GGWCC	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	305
BanII	GRGCYC	2 cut(s)	649, 850
Bbv12I	GWGCWC	1 cut(s)	850
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	528
BceAI	ACGGC	1 cut(s)	498
BciT130I	CCWGG	2 cut(s)	265, 406
BfaI	CTAG	2 cut(s)	398, 656
BfmI	CTRYAG	1 cut(s)	610
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
BmcAI	AGTACT	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	265, 406
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	166, 518
BmrFI	CCNGG	2 cut(s)	265, 406
BmrI	ACTGGG	1 cut(s)	644
BmsI	GCATC	5 cut(s)	21, 75, 229, 272, 577
BmuI	ACTGGG	1 cut(s)	644
BplI	GAGNNNNNCTC	1 cut(s)	837
BpmI	CTGGAG	1 cut(s)	472
Bsa29I	ATCGAT	1 cut(s)	687
BsaAI	YACGTR	1 cut(s)	722
BsaJI	CCNNGG	2 cut(s)	405, 514
BsaWI	WCCGGW	1 cut(s)	666
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	5 cut(s)	105, 455, 514, 554, 639
BseBI	CCWGG	2 cut(s)	265, 406
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	2 cut(s)	405, 514
BseGI	GGATG	2 cut(s)	415, 539
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseNI	ACTGG	5 cut(s)	105, 455, 514, 554, 639
BseSI	GKGCMC	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	100
BshFI	GGCC	3 cut(s)	168, 513, 769
BshVI	ATCGAT	1 cut(s)	687
BsiHKAI	GWGCWC	1 cut(s)	850
BsiSI	CCGG	2 cut(s)	233, 667
BslI	CCNNNNNNNGG	1 cut(s)	599
BsnI	GGCC	3 cut(s)	168, 513, 769
Bsp1286I	GDGCHC	3 cut(s)	305, 649, 850
Bsp1407I	TGTACA	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	684
BspANI	GGCC	3 cut(s)	168, 513, 769
BspDI	ATCGAT	1 cut(s)	687
BspPI	GGATC	1 cut(s)	692
BsrFI	RCCGGY	1 cut(s)	232
BsrGI	TGTACA	1 cut(s)	69
BsrI	ACTGG	5 cut(s)	105, 455, 514, 554, 639
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	405, 514
BssMI	GATC	1 cut(s)	684
Bst2UI	CCWGG	2 cut(s)	265, 406
Bst4CI	ACNGT	4 cut(s)	191, 292, 340, 709
Bst6I	CTCTTC	2 cut(s)	42, 181
BstAUI	TGTACA	1 cut(s)	69
BstBAI	YACGTR	1 cut(s)	722
BstDEI	CTNAG	1 cut(s)	383
BstDSI	CCRYGG	1 cut(s)	514
BstF5I	GGATG	2 cut(s)	415, 539
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	1 cut(s)	687
BstMBI	GATC	1 cut(s)	684
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 437
BstNI	CCWGG	2 cut(s)	265, 406
BstSCI	CCNGG	2 cut(s)	263, 404
BstSFI	CTRYAG	1 cut(s)	610
BstSLI	GKGCMC	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	100
BstXI	CCANNNNNNTGG	2 cut(s)	43, 412
Bsu15I	ATCGAT	1 cut(s)	687
BsuRI	GGCC	3 cut(s)	168, 513, 769
BsuTUI	ATCGAT	1 cut(s)	687
BtgI	CCRYGG	1 cut(s)	514
BtsCI	GGATG	2 cut(s)	415, 539
BtsIMutI	CAGTG	1 cut(s)	714
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	166, 518
ClaI	ATCGAT	1 cut(s)	687
Csp6I	GTAC	2 cut(s)	70, 108
CviAII	CATG	4 cut(s)	37, 73, 250, 377
CviQI	GTAC	2 cut(s)	70, 108
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	1 cut(s)	686
DpnII	GATC	1 cut(s)	684
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	42, 181
EarI	CTCTTC	2 cut(s)	42, 181
Ecl136II	GAGCTC	1 cut(s)	848
Eco24I	GRGCYC	2 cut(s)	649, 850
Eco47I	GGWCC	1 cut(s)	518
Eco53kI	GAGCTC	1 cut(s)	848
Eco57I	CTGAAG	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	848
EcoRII	CCWGG	2 cut(s)	263, 404
EcoT38I	GRGCYC	2 cut(s)	649, 850
FaeI	CATG	4 cut(s)	40, 76, 253, 380
FatI	CATG	4 cut(s)	36, 72, 249, 376
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	2 cut(s)	422, 546
FriOI	GRGCYC	2 cut(s)	649, 850
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	2 cut(s)	398, 656
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	3 cut(s)	168, 513, 769
HapII	CCGG	2 cut(s)	233, 667
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	4 cut(s)	40, 76, 253, 380
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	705
HindII	GTYRAC	1 cut(s)	705
HinfI	GANTC	1 cut(s)	743
HpaII	CCGG	2 cut(s)	233, 667
HphI	GGTGA	3 cut(s)	211, 650, 656
Hpy166II	GTNNAC	6 cut(s)	194, 343, 521, 641, 705, 725
Hpy188I	TCNGA	3 cut(s)	9, 24, 367
Hpy8I	GTNNAC	6 cut(s)	194, 343, 521, 641, 705, 725
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	3 cut(s)	7, 107, 745
HpyCH4III	ACNGT	4 cut(s)	191, 292, 340, 709
HpyCH4IV	ACGT	3 cut(s)	459, 497, 721
HpyCH4V	TGCA	7 cut(s)	88, 230, 253, 285, 376, 440, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 437
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	3 cut(s)	459, 497, 721
Hsp92II	CATG	4 cut(s)	40, 76, 253, 380
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	684
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	5 cut(s)	21, 75, 229, 272, 577
MaeI	CTAG	2 cut(s)	398, 656
MaeII	ACGT	3 cut(s)	459, 497, 721
MaeIII	GTNAC	4 cut(s)	455, 577, 662, 740
MalI	GATC	1 cut(s)	686
MboI	GATC	1 cut(s)	684
MboII	GAAGA	6 cut(s)	59, 94, 158, 168, 803, 836
MhlI	GDGCHC	3 cut(s)	305, 649, 850
MluCI	AATT	6 cut(s)	17, 183, 417, 491, 615, 670
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	4 cut(s)	250, 523, 748, 759
MroXI	GAANNNNTTC	1 cut(s)	339
MseI	TTAA	1 cut(s)	862
MspA1I	CMGCKG	1 cut(s)	325
MspI	CCGG	2 cut(s)	233, 667
MspR9I	CCNGG	2 cut(s)	265, 406
MvaI	CCWGG	2 cut(s)	265, 406
MwoI	GCNNNNNNNGC	2 cut(s)	269, 437
NdeII	GATC	1 cut(s)	684
NlaIII	CATG	4 cut(s)	40, 76, 253, 380
NmuCI	GTSAC	3 cut(s)	577, 662, 740
PdmI	GAANNNNTTC	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	90
PleI	GAGTC	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	737
Ppu21I	YACGTR	1 cut(s)	722
Psp124BI	GAGCTC	1 cut(s)	850
Psp6I	CCWGG	2 cut(s)	263, 404
PspGI	CCWGG	2 cut(s)	263, 404
PspPI	GGNCC	2 cut(s)	166, 518
PvuII	CAGCTG	1 cut(s)	325
RsaI	GTAC	2 cut(s)	71, 109
RsaNI	GTAC	2 cut(s)	70, 108
SacI	GAGCTC	1 cut(s)	850
SaqAI	TTAA	1 cut(s)	862
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	1 cut(s)	684
Sau96I	GGNCC	2 cut(s)	166, 518
ScaI	AGTACT	1 cut(s)	109
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	2 cut(s)	265, 406
SduI	GDGCHC	3 cut(s)	305, 649, 850
SetI	ASST	6 cut(s)	208, 327, 462, 500, 724, 850
SfaNI	GCATC	5 cut(s)	21, 75, 229, 272, 577
SfcI	CTRYAG	1 cut(s)	610
SinI	GGWCC	1 cut(s)	518
Sse9I	AATT	6 cut(s)	17, 183, 417, 491, 615, 670
SspI	AATATT	1 cut(s)	126
SspMI	CTAG	2 cut(s)	398, 656
SstI	GAGCTC	1 cut(s)	850
StyD4I	CCNGG	2 cut(s)	263, 404
TaaI	ACNGT	4 cut(s)	191, 292, 340, 709
TaiI	ACGT	3 cut(s)	462, 500, 724
TaqI	TCGA	2 cut(s)	687, 798
TasI	AATT	6 cut(s)	17, 183, 417, 491, 615, 670
TatI	WGTACW	2 cut(s)	69, 107
Tru1I	TTAA	1 cut(s)	862
Tru9I	TTAA	1 cut(s)	862
TscAI	CASTG	1 cut(s)	714
TseFI	GTSAC	3 cut(s)	577, 662, 740
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	3 cut(s)	577, 662, 740
TspDTI	ATGAA	2 cut(s)	26, 705
TspRI	CASTG	1 cut(s)	714
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	3 cut(s)	17, 183, 491
XmiI	GTMKAC	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	2 cut(s)	398, 656
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.