Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008855

Physical Location & Seq

Genomic Coordinates Forward (+)

66677340 .. 66679157

Gene Structure 1818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG411100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCCAATCGTACAGTAATCAAGTGCCCATACTTCACCAAATTTCAGTTGACCATTGAAACTGTTCATAGGGCTGATAATGGTCAGTCCGAAAATGTACATGGTCTAAGCAAAGAAATATTAGCAGCCAGGGATGTGGAAATTGTTGATATAGCTTCATCTGCAAGGGATTACTGGAGTTACGTGGTTGGTAGTAACAATACAGACTTCTCTAATTTTAAATCAGAGAAGACTGGCCGTGGTCCACTTTTAGAGGGATGGCAGGATACGTCAAGTCCAGTTATGACAGCCTACAAGTTGGTCACCATAGATGCGCCATATTGGGGATTTGGCTATAAACTTGAACAAGCTTTGCTATTGGGTGAAAGGGCTCTTTTCCTTGAAAGTCACCGCAATTGTTTTGCTTGGATAGATGAATGGTTTGGAATGACTATGCAACAGCTACGTGAACTTGATCAACAAAGCGACTCATTAGCTGAGGTACAAAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0008526 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IP_trans

Protein Analysis

164

Amino Acids

18.77

Weight (kDa)

4.92

Isoelectric Point (pI)

28.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IP_trans	PF02121	4 - 154	2e-48	Phosphatidylinositol transfer protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0008855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33520 FvH4_3g33520
malus_domestica	MD03G1111000.v1.1 MD11G1124900.v1.1
prunus_persica	Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1
pyrus_communis	pycom11g10540
rosa_chinensis	RchiOBHm_Chr5g0060991
rosa_laevigata	RLG00000035418
rosa_multiflora	Rmu_sc0000640.1_g000013
rosa_roxburghii	Rroxscaffold_1G00019660
rosa_rugosa	Rorug05G0335500 Rorug05G0335600 Rorug05G0335700
rosa_samantha	Rh5AG398200 Rh5BG411100 Rh5CG436100 Rh5DG425500
rosa_wichuraiana	Rw5G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	391
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	41, 487
AfaI	GTAC	3 cut(s)	13, 99, 483
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	59, 344, 383
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	4 cut(s)	155, 350, 442, 476
AluI	AGCT	4 cut(s)	155, 350, 442, 476
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	41, 487
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	4 cut(s)	28, 295, 374, 380
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	236
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	1 cut(s)	252
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	130
BciVI	GTATCC	1 cut(s)	259
BclI	TGATCA	1 cut(s)	454
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	477
BsaAI	YACGTR	2 cut(s)	184, 446
BsaJI	CCNNGG	2 cut(s)	129, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	3 cut(s)	179, 238, 278
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	129, 238
BseGI	GGATG	2 cut(s)	139, 263
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	3 cut(s)	179, 238, 278
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	137
BshFI	GGCC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	323
BsnI	GGCC	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	29, 373
Bsp1407I	TGTACA	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	454
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	469
BsrGI	TGTACA	1 cut(s)	97
BsrI	ACTGG	3 cut(s)	179, 238, 278
BssECI	CCNNGG	2 cut(s)	129, 238
BssMI	GATC	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	16, 64
BstAUI	TGTACA	1 cut(s)	97
BstBAI	YACGTR	2 cut(s)	184, 446
BstDEI	CTNAG	2 cut(s)	107, 477
BstDSI	CCRYGG	1 cut(s)	238
BstEII	GGTNACC	1 cut(s)	301
BstF5I	GGATG	2 cut(s)	139, 263
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	130
BstPI	GGTNACC	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	236
BstXI	CCANNNNNNTGG	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	237
BtgI	CCRYGG	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	139, 263
CfoI	GCGC	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	3 cut(s)	12, 98, 482
CviAII	CATG	1 cut(s)	101
CviQI	GTAC	3 cut(s)	12, 98, 482
DdeI	CTNAG	2 cut(s)	107, 477
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DraI	TTTAAA	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	301
EcoO65I	GGTNACC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	373
FaeI	CATG	1 cut(s)	104
FaiI	YATR	9 cut(s)	31, 69, 102, 152, 284, 308, 319, 336, 434
FatI	CATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	2 cut(s)	146, 270
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	1 cut(s)	126
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	237
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	1 cut(s)	104
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	1 cut(s)	467
HphI	GGTGA	4 cut(s)	28, 295, 374, 380
Hpy166II	GTNNAC	3 cut(s)	51, 245, 449
Hpy188I	TCNGA	2 cut(s)	91, 226
Hpy8I	GTNNAC	3 cut(s)	51, 245, 449
HpyCH4III	ACNGT	2 cut(s)	16, 64
HpyCH4IV	ACGT	3 cut(s)	183, 269, 445
HpyCH4V	TGCA	2 cut(s)	164, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	107, 477
HpySE526I	ACGT	3 cut(s)	183, 269, 445
Hsp92II	CATG	1 cut(s)	104
HspAI	GCGC	1 cut(s)	314
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	1 cut(s)	454
LpnPI	CCDG	6 cut(s)	115, 142, 160, 219, 248, 291
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	1 cut(s)	301
MaeII	ACGT	3 cut(s)	183, 269, 445
MaeIII	GTNAC	4 cut(s)	179, 194, 301, 386
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	1 cut(s)	241
MfeI	CAATTG	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	29, 373
MluCI	AATT	5 cut(s)	41, 141, 214, 394, 487
MlyI	GAGTC	1 cut(s)	461
MnlI	CCTC	2 cut(s)	247, 472
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	1 cut(s)	104
NmuCI	GTSAC	2 cut(s)	301, 386
PdmI	GAANNNNTTC	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
Ppu21I	YACGTR	2 cut(s)	184, 446
Psp6I	CCWGG	1 cut(s)	128
PspEI	GGTNACC	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	242
RsaI	GTAC	3 cut(s)	13, 99, 483
RsaNI	GTAC	3 cut(s)	12, 98, 482
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	2 cut(s)	29, 373
SetI	ASST	8 cut(s)	157, 186, 272, 352, 444, 448, 478, 483
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	242
Sse9I	AATT	5 cut(s)	41, 141, 214, 394, 487
SsiI	CCGC	1 cut(s)	391
SspI	AATATT	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	16, 64
TaiI	ACGT	3 cut(s)	186, 272, 448
TasI	AATT	5 cut(s)	41, 141, 214, 394, 487
TatI	WGTACW	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseFI	GTSAC	2 cut(s)	301, 386
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	2 cut(s)	301, 386
TspDTI	ATGAA	3 cut(s)	56, 147, 429
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	2 cut(s)	41, 487
XmnI	GAANNNNTTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.