Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003083

Physical Location & Seq

Genomic Coordinates Reverse (-)

13146985 .. 13159960

Gene Structure 12976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1140900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3342 bp

ATGAGCAGAGAGCATCTCCAAATTCTCTCTGTTAGGGTTTTCTCTTTGCTCGTTTTCTCCAGCGGCTTCTTCAGCTCGCCTCTGCCCCGAGCGGCGGGGCAGGATTCCGAAGGCCGCGATGGTGGCAGCAGAGTGTATGACCTCGCCACCGAGCTCGTCTTGAGCCGCTACTCCAATCTCACCCATGTCTTCCGTGATGAACTCCTCAAAAAGTTTGGCTTCTGCATCATCGACGTAGACGAGGATTTGAATGGGGCTTTCAATTTCTCACAAGATTCAAGCTTCATTACCAACTGTGCTAAAAAAATGGCAGGTGGAACGATTGGGGAGATTTTGGGTCGATTGTGCACAGCCGCAGAAATGCAGATCTACGCTGGTGGTATATTGCAAACCAAGAAGACCACATACTTAAAACCGAACAAGAACTGTAATCTGTCAGCATGGATTTCTGGATGTGAGCCTGGGTGGGCTTGTGCTTCTGCTGAGCAAGTTGAACTGAAAAATCGAACGTATGTGCCTGCCAGAACCGTCGAGTGTCAACCTTGTTGTGAGGGTTTCTTCTGCCCTCGAGGTCTTACTTGCATGCTCCCTTGCCCAAAGGGTGCTTACTGCCCACTTGCAAAACTCAATAATGGATCTGGGATATGTGAGCCCTATCATCTACCTCCTGGGAAGCAAAACCATACTTGTGGAGGAGCAGCTCAGTGGGCTGATGTCGTTAGTAGTAGAGAGGTATTCTGTACCGGTGGATCATATTGTCCGTCAACCATCCGAAAAATCCCTTGCAGTAGTGGACACTTTTGCAGGCAAGGTTCGACAACTGAGGAAGATTGTTTCCGGATGGCGACTTGTAAGTCGCATTCAGAAAATCAAAATATAACTGCATATGGTATCATGATTTTTGCAGGATTAATTTTCATCTTTCTCGTTCTATATAATTTTTCTGACCAAGTTCTCGCCACCCGAGAAAAAAGACAAGCAAAATCCAGGGAAAGAGCAGTTGAAAGTGTAAGAGAAAATGCACAAGCGCGTGAAAAATGGAAATCTGCGAAAGACATTGCTAAGAAGCATGCAGTTGGACTGTCAACACAGTTTTCACGTACATTTTCTCGCAGAAAATCCACCAAGTCAGACCCGCTGAAAGGATTCGGACAGGCTAAACCTGGATCAGATGCTGCCTTGCCATCTATGCCAACCGGGATAGGTGAGCAATCAGCTGGAACATCTAAAGGAAAGGAAAAGGAAAAAAGAAACCTCACACAAATGATAAATGCAATCGAGGAAGACCCAAATAGTCATGAAGGCTTCAATCTAGAAATAGGAGATAAAAACATTAAAAAGGAAGCACCAAAAGCACCGAAAGGTAAGCAGTTGCATACTCAGAGTCAAATTTTCAAGTATGCATATGGTCAAATTGAGAAGGAAAAGGCATTACAGGAGCAGAATGCGAACTTAACCTTCTCCGGGGTCATACAAATGGCTGGTGTTCTTGAAAACAGGAAGAGACCTCCAATTGAGGTTGTTTTTAAAGATCTAACTCTCACGTTGAAAGGGAAAAACAAACATCTATTGAGGTGTGTGACTGGGAAAATATCGCCTGGCCGGGTTTCAGCTGTCATGGGTCCATCTGGGGCTGGAAAAACAACATTTCTTTCTGCCTTGGTTGGAAAAGTGAGGGGGTGCACAGTGAGTGGTATGATACTTGTAAATGGAAAGATGGAAGCTATCCACTGTTACAAGAAAATCATTGGCTTTGTGCCACAAGATGATATTGTGCATGGAAATTTGACAGTTGAAGAGAATCTCTGGTTTAGTGCAAGATGCAGACTTTCTGCTGAACTGCCTAAACCAGAGAAGGTCTTAGTCGTTGAAAGGGTTATTGAATCTTTGGGTCTGCAGGCTGTGCGGGATTCCCTGGTTGGAACGGTGGAGAAGCGAGGAATCTCTGGAGGTCAAAGAAAGCGAGTAAATGTTGGGCTGGAAATGGTCATGGAACCATCACTTCTAATTTTAGATGAACCCACATCTGGTTTGGATAGTTCGTCTTCTATTTTATTACTGAAAGCTCTTCGACGTGAGGCTCTTGAAGGAGTTAACATTTGCATGGTTGTCCACCAACCTAGCTATACCTTGTTCAAGATGTTTGATGATTTGATCCTTCTGGCTAAAGGGGGACTTACAGTGTATCATGGACCAGTGAAGAAAATTGAAGAGTACTTTGGTAGTCTTGGGATTACTGTCCCTGAGCGTGTCAACCCTCCAGACTATTTCATTGATATTTTGGAAGGCATAGTAAAACCAAATACAACCACAGGGGTGACCTATAAGCAACTACCTGTTAGATGGATGCTTCATAATGGGTACCCAGTTCCTATGGATATGCTTCAGAGTGTTGATGGGATGGTTGCATCTGCAGGTGACAATTCAGCTCATGGAGGAAGTACTCCAAATGCTGTATCTGAGGGACAGTCCTTTGCTAGAGACTTTTGGAAGGATGTCAAGTGTCATGTTGAGGTGAAGAAGGACGCTTTAAAACATAATTTTATAACATTAAACGACTTATCTGAGCGGACTAACCCTGGCGTGTTCCAGCAATATAAATATTTCCTCGGAAGGGCCTGTAAGCAGTGGTTACGAGAAGCTAGAACACAAGCTGTAGATTTTCTGATTTTATTGCTAGCTGGAATCTGCTTAGGAACAATTGCCAAAGTGCGCGATGAAACCTTTGGTGCACTTGGTTATACATACACAGTCATATCAGTGTCTCTCCTGTGCAAGATTGCTGCTTTAAGAACATTTGGACTGGATAAATTGCATTACTGGAGGGAGAGCTCTTCTGGCATGAGTAGTTTGGCGTACTTTCTTTCAAAGGACACAGTTGATCATTTCAATACAATCATGAAGCCTCTAGTGTATCTTTCTATGTTCTATTTCTTCAACAATCCAAGATCATCCATCATAGATAATTACATTGTTTTGATTTGTCTGGTTTACTGCGTAACCGGTATAGCTTATGCACTGTCCATATACCTGGAACCTGGGCCAGCCCAACTGTGGTCAGTACTTCTTCCAGTCATTTTGACTCTAGTAGCAAACTACAACGAGAACAAACTCGTTTCAAGAATAGCTAATTTGTGCTACACTAAGTGGGCTTTGGAAGCTTTTGTCATATCAAATGCCAAAAGGTACTCTGGAGTGTGGCTAATCACACGATGTGGTTCACTAATGAAAAATGGATATGATCTCAATCATTGGAACCGCAGTTTAATCTTCCTCATCATCACTGGTATTGTTACTCGAGGGATTGCATTCTTTTTAATGGTACTCTTGCAAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

1114

Amino Acids

123.12

Weight (kDa)

9.09

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	527 - 676	7.3e-23	ABC transporter
ABC2_membrane_7	PF19055	705 - 1113	6.3e-222	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60740
fragaria_vesca	FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510
malus_domestica	MD03G1123900.v1.1 MD11G1140900.v1.1
prunus_persica	Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1
pyrus_communis	pycom11g11690
rosa_chinensis	RchiOBHm_Chr5g0058181
rosa_laevigata	RLG00000035201
rosa_multiflora	Rmu_co8117600.1_g000001 Rmu_sc0000367.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022350 Rroxscaffold_1G00072570
rosa_rugosa	Rorug04G0431300 Rorug05G0312500 Rorug05G0312600
rosa_samantha	Rh5AG033200 Rh5AG380400 Rh5BG391600 Rh5CG035900 Rh5CG415600 Rh5DG028700
rosa_wichuraiana	Rw5G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2546
AarI	CACCTGC	2 cut(s)	302, 2405
AasI	GACNNNNNNGTC	1 cut(s)	853
AbsI	CCTCGAGG	1 cut(s)	567
Acc36I	ACCTGC	2 cut(s)	302, 2405
Acc65I	GGTACC	1 cut(s)	2361
AccB1I	GGYRCC	1 cut(s)	2361
AccBSI	CCGCTC	2 cut(s)	92, 2569
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	3 cut(s)	117, 1030, 2715
AccIII	TCCGGA	1 cut(s)	837
AclWI	GGATC	4 cut(s)	643, 757, 1174, 2149
AcoI	YGGCCR	1 cut(s)	1600
AcsI	RAATTY	3 cut(s)	21, 1389, 1783
AcuI	CTGAAG	2 cut(s)	55, 2369
AdeI	CACNNNGTG	2 cut(s)	3147, 3215
AfaI	GTAC	9 cut(s)	742, 1102, 2216, 2363, 2443, 2858, 3063, 3188, 3324
AfiI	CCNNNNNNNGG	6 cut(s)	94, 1142, 1464, 2027, 2614, 3054
AgeI	ACCGGT	2 cut(s)	743, 3002
AjiI	CACGTC	1 cut(s)	2075
AjnI	CCWGG	9 cut(s)	460, 667, 986, 1162, 1597, 1914, 2578, 3030, 3037
AjuI	GAANNNNNNNTTGG	2 cut(s)	2202, 2234
AleI	CACNNNNGTG	1 cut(s)	2315
Alw21I	GWGCWC	5 cut(s)	156, 350, 1685, 2734, 2834
Alw26I	GTCTC	3 cut(s)	1498, 2475, 2769
Alw44I	GTGCAC	3 cut(s)	346, 1681, 2730
AlwI	GGATC	4 cut(s)	643, 757, 1174, 2149
AlwNI	CAGNNNCTG	1 cut(s)	1175
Ama87I	CYCGRG	4 cut(s)	87, 567, 963, 3297
Aor13HI	TCCGGA	1 cut(s)	837
AoxI	GGCC	4 cut(s)	112, 1600, 2616, 3041
ApaLI	GTGCAC	3 cut(s)	346, 1681, 2730
ApeKI	GCWGC	4 cut(s)	126, 698, 1175, 2783
ApoI	RAATTY	3 cut(s)	21, 1389, 1783
AseI	ATTAAT	1 cut(s)	911
AsiGI	ACCGGT	2 cut(s)	743, 3002
Asp700I	GAANNNNTTC	1 cut(s)	1145
Asp718I	GGTACC	1 cut(s)	2361
AspLEI	GCGC	2 cut(s)	1030, 2715
AspS9I	GGNCC	4 cut(s)	1622, 2192, 2616, 3041
AsuC2I	CCSGG	3 cut(s)	1198, 1465, 1604
AsuHPI	GGTGA	5 cut(s)	172, 1217, 2329, 2429, 2527
AsuNHI	GCTAGC	1 cut(s)	2677
AvaI	CYCGRG	4 cut(s)	87, 567, 963, 3297
AvaII	GGWCC	2 cut(s)	1622, 2192
BaeGI	GKGCMC	3 cut(s)	350, 1685, 2734
BanI	GGYRCC	1 cut(s)	2361
BanII	GRGCYC	3 cut(s)	156, 654, 2834
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BbsI	GAAGAC	4 cut(s)	181, 404, 1290, 2037
Bbv12I	GWGCWC	5 cut(s)	156, 350, 1685, 2734, 2834
BbvI	GCAGC	4 cut(s)	138, 710, 1162, 2770
BciT130I	CCWGG	9 cut(s)	462, 669, 988, 1164, 1599, 1916, 2580, 3032, 3039
BclI	TGATCA	1 cut(s)	2881
BcnI	CCSGG	3 cut(s)	1198, 1465, 1604
BcoDI	GTCTC	3 cut(s)	1498, 2475, 2769
BfaI	CTAG	7 cut(s)	1313, 2121, 2478, 2643, 2678, 2909, 3086
BfmI	CTRYAG	3 cut(s)	1895, 2412, 2655
BfuAI	ACCTGC	2 cut(s)	302, 2405
BglII	AGATCT	2 cut(s)	366, 1531
BisI	GCNGC	9 cut(s)	64, 93, 115, 127, 166, 354, 699, 1176, 2784
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	9 cut(s)	65, 94, 116, 128, 167, 355, 700, 1177, 2785
BmcAI	AGTACT	3 cut(s)	2216, 2443, 3063
Bme18I	GGWCC	2 cut(s)	1622, 2192
BmeT110I	CYCGRG	4 cut(s)	87, 567, 963, 3297
BmgBI	CACGTC	1 cut(s)	2075
BmgT120I	GGNCC	4 cut(s)	1622, 2192, 2616, 3041
BmiI	GGNNCC	5 cut(s)	1623, 1995, 2363, 3036, 3257
BmrI	ACTGGG	2 cut(s)	1593, 2360
BmsI	GCATC	6 cut(s)	22, 234, 1162, 1811, 2337, 2417
BmtI	GCTAGC	1 cut(s)	2681
BmuI	ACTGGG	2 cut(s)	1593, 2360
BpiI	GAAGAC	4 cut(s)	181, 404, 1290, 2037
BplI	GAGNNNNNCTC	1 cut(s)	32
BpmI	CTGGAG	5 cut(s)	43, 1968, 2244, 2842, 3213
Bpu10I	CCTNAGC	2 cut(s)	2244, 2692
Bpu1102I	GCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	181
BpuMI	CCSGG	3 cut(s)	1198, 1465, 1604
BsaAI	YACGTR	1 cut(s)	1100
BsaBI	GATNNNNATC	1 cut(s)	3246
BsaI	GGTCTC	1 cut(s)	1498
BsaJI	CCNNGG	9 cut(s)	461, 668, 987, 1464, 1659, 1914, 2578, 2608, 3038
BsaWI	WCCGGW	3 cut(s)	743, 837, 3002
Bsc4I	CCNNNNNNNGG	6 cut(s)	94, 1142, 1464, 2027, 2614, 3054
Bse118I	RCCGGY	2 cut(s)	743, 3002
Bse1I	ACTGG	7 cut(s)	1588, 2195, 2366, 2808, 2825, 3071, 3289
Bse3DI	GCAATG	1 cut(s)	1056
Bse8I	GATNNNNATC	1 cut(s)	3246
BseAI	TCCGGA	1 cut(s)	837
BseBI	CCWGG	9 cut(s)	462, 669, 988, 1164, 1599, 1916, 2580, 3032, 3039
BseDI	CCNNGG	9 cut(s)	461, 668, 987, 1464, 1659, 1914, 2578, 2608, 3038
BseGI	GGATG	7 cut(s)	458, 768, 846, 2352, 2406, 2500, 2951
BseJI	GATNNNNATC	1 cut(s)	3246
BseLI	CCNNNNNNNGG	6 cut(s)	94, 1142, 1464, 2027, 2614, 3054
BseMI	GCAATG	1 cut(s)	1056
BseMII	CTCAG	7 cut(s)	474, 716, 813, 1394, 2235, 2451, 2556
BseNI	ACTGG	7 cut(s)	1588, 2195, 2366, 2808, 2825, 3071, 3289
BseRI	GAGGAG	2 cut(s)	194, 708
BseSI	GKGCMC	3 cut(s)	350, 1685, 2734
BseXI	GCAGC	4 cut(s)	138, 710, 1162, 2770
Bsh1236I	CGCG	3 cut(s)	117, 1030, 2715
BshFI	GGCC	4 cut(s)	114, 1602, 2618, 3043
BshNI	GGYRCC	1 cut(s)	2361
BshTI	ACCGGT	2 cut(s)	743, 3002
BsiHKAI	GWGCWC	5 cut(s)	156, 350, 1685, 2734, 2834
BsiHKCI	CYCGRG	4 cut(s)	87, 567, 963, 3297
BsiSI	CCGG	6 cut(s)	744, 838, 1197, 1464, 1603, 3003
BslFI	GGGAC	3 cut(s)	2187, 2225, 2478
BslI	CCNNNNNNNGG	6 cut(s)	94, 1142, 1464, 2027, 2614, 3054
BsmAI	GTCTC	3 cut(s)	1498, 2475, 2769
BsmFI	GGGAC	3 cut(s)	2187, 2225, 2478
BsmI	GAATGC	3 cut(s)	859, 1450, 3308
BsnI	GGCC	4 cut(s)	114, 1602, 2618, 3043
Bso31I	GGTCTC	1 cut(s)	1498
BsoBI	CYCGRG	4 cut(s)	87, 567, 963, 3297
Bsp1286I	GDGCHC	6 cut(s)	156, 350, 654, 1685, 2734, 2834
Bsp13I	TCCGGA	1 cut(s)	837
Bsp143I	GATC	9 cut(s)	366, 635, 749, 1166, 1531, 2154, 2881, 2948, 3241
Bsp1720I	GCTNAGC	1 cut(s)	483
BspANI	GGCC	4 cut(s)	114, 1602, 2618, 3043
BspCNI	CTCAG	7 cut(s)	475, 715, 814, 1393, 2236, 2452, 2557
BspEI	TCCGGA	1 cut(s)	837
BspFNI	CGCG	3 cut(s)	117, 1030, 2715
BspHI	TCATGA	3 cut(s)	894, 1297, 2898
BspLI	GGNNCC	5 cut(s)	1623, 1995, 2363, 3036, 3257
BspMAI	CTGCAG	2 cut(s)	1899, 2416
BspMI	ACCTGC	2 cut(s)	302, 2405
BspOI	GCTAGC	1 cut(s)	2681
BspPI	GGATC	4 cut(s)	643, 757, 1174, 2149
BspQI	GCTCTTC	2 cut(s)	2073, 2839
BspT107I	GGYRCC	1 cut(s)	2361
BspTNI	GGTCTC	1 cut(s)	1498
BsrBI	CCGCTC	2 cut(s)	92, 2569
BsrDI	GCAATG	1 cut(s)	1056
BsrFI	RCCGGY	2 cut(s)	743, 3002
BsrI	ACTGG	7 cut(s)	1588, 2195, 2366, 2808, 2825, 3071, 3289
BssAI	RCCGGY	2 cut(s)	743, 3002
BssECI	CCNNGG	9 cut(s)	461, 668, 987, 1464, 1659, 1914, 2578, 2608, 3038
BssMI	GATC	9 cut(s)	366, 635, 749, 1166, 1531, 2154, 2881, 2948, 3241
BssT1I	CCWWGG	1 cut(s)	1659
Bst2UI	CCWGG	9 cut(s)	462, 669, 988, 1164, 1599, 1916, 2580, 3032, 3039
Bst6I	CTCTTC	5 cut(s)	1496, 1791, 2073, 2205, 2839
BstAPI	GCANNNNNTGC	1 cut(s)	1903
BstBAI	YACGTR	1 cut(s)	1100
BstC8I	GCNNGC	8 cut(s)	77, 519, 584, 806, 1071, 1899, 2679, 3045
BstEII	GGTNACC	1 cut(s)	2317
BstF5I	GGATG	7 cut(s)	458, 768, 846, 2352, 2406, 2500, 2951
BstFNI	CGCG	3 cut(s)	117, 1030, 2715
BstHHI	GCGC	2 cut(s)	1030, 2715
BstKTI	GATC	9 cut(s)	369, 638, 752, 1169, 1534, 2157, 2884, 2951, 3244
BstMAI	GTCTC	3 cut(s)	1498, 2475, 2769
BstMBI	GATC	9 cut(s)	366, 635, 749, 1166, 1531, 2154, 2881, 2948, 3241
BstMWI	GCNNNNNNNGC	8 cut(s)	72, 123, 707, 1189, 1352, 1903, 2838, 3158
BstNI	CCWGG	9 cut(s)	462, 669, 988, 1164, 1599, 1916, 2580, 3032, 3039
BstNSI	RCATGY	2 cut(s)	586, 1073
BstPI	GGTNACC	1 cut(s)	2317
BstSFI	CTRYAG	3 cut(s)	1895, 2412, 2655
BstSLI	GKGCMC	3 cut(s)	350, 1685, 2734
BstUI	CGCG	3 cut(s)	117, 1030, 2715
BstV1I	GCAGC	4 cut(s)	138, 710, 1162, 2770
BstV2I	GAAGAC	4 cut(s)	181, 404, 1290, 2037
BstX2I	RGATCY	3 cut(s)	366, 635, 1531
BstXI	CCANNNNNNTGG	2 cut(s)	689, 3031
BstYI	RGATCY	3 cut(s)	366, 635, 1531
BsuRI	GGCC	4 cut(s)	114, 1602, 2618, 3043
BtgZI	GCGATG	2 cut(s)	132, 2730
BtrI	CACGTC	1 cut(s)	2075
BtsCI	GGATG	7 cut(s)	458, 768, 846, 2352, 2406, 2500, 2951
BtsI	GCAGTG	1 cut(s)	2633
BtsIMutI	CAGTG	9 cut(s)	710, 1692, 1729, 2187, 2202, 2633, 2766, 3017, 3282
BveI	ACCTGC	2 cut(s)	302, 2405
Cac8I	GCNNGC	8 cut(s)	77, 519, 584, 806, 1071, 1899, 2679, 3045
CaiI	CAGNNNCTG	1 cut(s)	1175
CciI	TCATGA	3 cut(s)	894, 1297, 2898
CfoI	GCGC	2 cut(s)	1030, 2715
Cfr10I	RCCGGY	2 cut(s)	743, 3002
Cfr13I	GGNCC	4 cut(s)	1622, 2192, 2616, 3041
CseI	GACGC	1 cut(s)	2534
Csp6I	GTAC	9 cut(s)	741, 1101, 2215, 2362, 2442, 2857, 3062, 3187, 3323
CspAI	ACCGGT	2 cut(s)	743, 3002
CviQI	GTAC	9 cut(s)	741, 1101, 2215, 2362, 2442, 2857, 3062, 3187, 3323
DpnI	GATC	9 cut(s)	368, 637, 751, 1168, 1533, 2156, 2883, 2950, 3243
DpnII	GATC	9 cut(s)	366, 635, 749, 1166, 1531, 2154, 2881, 2948, 3241
DraI	TTTAAA	2 cut(s)	1528, 2532
DraIII	CACNNNGTG	2 cut(s)	3147, 3215
DrdI	GACNNNNNNGTC	1 cut(s)	853
DseDI	GACNNNNNNGTC	1 cut(s)	853
EaeI	YGGCCR	1 cut(s)	1600
Eam1104I	CTCTTC	5 cut(s)	1496, 1791, 2073, 2205, 2839
EarI	CTCTTC	5 cut(s)	1496, 1791, 2073, 2205, 2839
Ecl136II	GAGCTC	2 cut(s)	154, 2832
Eco130I	CCWWGG	1 cut(s)	1659
Eco24I	GRGCYC	3 cut(s)	156, 654, 2834
Eco31I	GGTCTC	1 cut(s)	1498
Eco47I	GGWCC	2 cut(s)	1622, 2192
Eco53kI	GAGCTC	2 cut(s)	154, 2832
Eco57I	CTGAAG	2 cut(s)	55, 2369
Eco88I	CYCGRG	4 cut(s)	87, 567, 963, 3297
Eco91I	GGTNACC	1 cut(s)	2317
EcoICRI	GAGCTC	2 cut(s)	154, 2832
EcoO109I	RGGNCCY	1 cut(s)	2616
EcoO65I	GGTNACC	1 cut(s)	2317
EcoRII	CCWGG	9 cut(s)	460, 667, 986, 1162, 1597, 1914, 2578, 3030, 3037
EcoT14I	CCWWGG	1 cut(s)	1659
EcoT22I	ATGCAT	1 cut(s)	1405
EcoT38I	GRGCYC	3 cut(s)	156, 654, 2834
ErhI	CCWWGG	1 cut(s)	1659
FalI	AAGNNNNNCTT	4 cut(s)	203, 235, 2160, 2192
FaqI	GGGAC	3 cut(s)	2187, 2225, 2478
FauI	CCCGC	3 cut(s)	88, 1143, 1899
FauNDI	CATATG	2 cut(s)	886, 1405
FbaI	TGATCA	1 cut(s)	2881
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	9 cut(s)	64, 93, 115, 127, 166, 354, 699, 1176, 2784
FokI	GGATG	7 cut(s)	465, 755, 853, 2359, 2413, 2507, 2938
FriOI	GRGCYC	3 cut(s)	156, 654, 2834
Fsp4HI	GCNGC	9 cut(s)	64, 93, 115, 127, 166, 354, 699, 1176, 2784
FspBI	CTAG	7 cut(s)	1313, 2121, 2478, 2643, 2678, 2909, 3086
GlaI	GCGC	2 cut(s)	1029, 2714
GluI	GCNGC	9 cut(s)	64, 93, 115, 127, 166, 354, 699, 1176, 2784
GsuI	CTGGAG	5 cut(s)	43, 1968, 2244, 2842, 3213
HaeIII	GGCC	4 cut(s)	114, 1602, 2618, 3043
HapII	CCGG	6 cut(s)	744, 838, 1197, 1464, 1603, 3003
HgaI	GACGC	1 cut(s)	2534
HhaI	GCGC	2 cut(s)	1030, 2715
Hin6I	GCGC	2 cut(s)	1028, 2713
HinP1I	GCGC	2 cut(s)	1028, 2713
HincII	GTYRAC	5 cut(s)	539, 765, 1086, 2095, 2254
HindII	GTYRAC	5 cut(s)	539, 765, 1086, 2095, 2254
HindIII	AAGCTT	2 cut(s)	280, 3159
HpaI	GTTAAC	1 cut(s)	2095
HpaII	CCGG	6 cut(s)	744, 838, 1197, 1464, 1603, 3003
HphI	GGTGA	5 cut(s)	172, 1217, 2329, 2429, 2527
Hpy99I	CGWCG	3 cut(s)	236, 533, 2076
HpyCH4IV	ACGT	5 cut(s)	234, 509, 1099, 1544, 2074
HpyF10VI	GCNNNNNNNGC	8 cut(s)	72, 123, 707, 1189, 1352, 1903, 2838, 3158
HpySE526I	ACGT	5 cut(s)	234, 509, 1099, 1544, 2074
HspAI	GCGC	2 cut(s)	1028, 2713
Kpn2I	TCCGGA	1 cut(s)	837
KpnI	GGTACC	1 cut(s)	2365
Ksp22I	TGATCA	1 cut(s)	2881
KspAI	GTTAAC	1 cut(s)	2095
Kzo9I	GATC	9 cut(s)	366, 635, 749, 1166, 1531, 2154, 2881, 2948, 3241
LguI	GCTCTTC	2 cut(s)	2073, 2839
LmnI	GCTCC	3 cut(s)	591, 695, 1438
Lsp1109I	GCAGC	4 cut(s)	138, 710, 1162, 2770
LweI	GCATC	6 cut(s)	22, 234, 1162, 1811, 2337, 2417
MaeI	CTAG	7 cut(s)	1313, 2121, 2478, 2643, 2678, 2909, 3086
MaeII	ACGT	5 cut(s)	234, 509, 1099, 1544, 2074
MaeIII	GTNAC	7 cut(s)	1579, 1733, 2317, 2417, 2631, 2998, 3292
MalI	GATC	9 cut(s)	368, 637, 751, 1168, 1533, 2156, 2883, 2950, 3243
MbiI	CCGCTC	2 cut(s)	92, 2569
MboI	GATC	9 cut(s)	366, 635, 749, 1166, 1531, 2154, 2881, 2948, 3241
MfeI	CAATTG	2 cut(s)	1512, 2700
MflI	RGATCY	3 cut(s)	366, 635, 1531
MhlI	GDGCHC	6 cut(s)	156, 350, 654, 1685, 2734, 2834
MlyI	GAGTC	2 cut(s)	1393, 3076
MmeI	TCCRAC	3 cut(s)	1057, 1645, 1900
Mph1103I	ATGCAT	1 cut(s)	1405
MroI	TCCGGA	1 cut(s)	837
MroXI	GAANNNNTTC	1 cut(s)	1145
MslI	CAYNNNNRTG	6 cut(s)	687, 1262, 1475, 2102, 2315, 2759
MspA1I	CMGCKG	4 cut(s)	63, 1138, 1217, 1613
MspI	CCGG	6 cut(s)	744, 838, 1197, 1464, 1603, 3003
MunI	CAATTG	2 cut(s)	1512, 2700
Mva1269I	GAATGC	3 cut(s)	859, 1450, 3308
MvaI	CCWGG	9 cut(s)	462, 669, 988, 1164, 1599, 1916, 2580, 3032, 3039
MvnI	CGCG	3 cut(s)	117, 1030, 2715
MwoI	GCNNNNNNNGC	8 cut(s)	72, 123, 707, 1189, 1352, 1903, 2838, 3158
NciI	CCSGG	3 cut(s)	1198, 1465, 1604
NdeI	CATATG	2 cut(s)	886, 1405
NdeII	GATC	9 cut(s)	366, 635, 749, 1166, 1531, 2154, 2881, 2948, 3241
NheI	GCTAGC	1 cut(s)	2677
NlaIV	GGNNCC	5 cut(s)	1623, 1995, 2363, 3036, 3257
NmuCI	GTSAC	3 cut(s)	1579, 2317, 2417
NsiI	ATGCAT	1 cut(s)	1405
NspI	RCATGY	2 cut(s)	586, 1073
OliI	CACNNNNGTG	1 cut(s)	2315
PaeI	GCATGC	2 cut(s)	586, 1073
PaeR7I	CTCGAG	2 cut(s)	567, 3297
PagI	TCATGA	3 cut(s)	894, 1297, 2898
PaqCI	CACCTGC	2 cut(s)	302, 2405
PciSI	GCTCTTC	2 cut(s)	2073, 2839
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	3 cut(s)	859, 1450, 3308
PdmI	GAANNNNTTC	1 cut(s)	1145
PfeI	GAWTC	8 cut(s)	104, 275, 1146, 1801, 1883, 1910, 1941, 2685
PinAI	ACCGGT	2 cut(s)	743, 3002
PkrI	GCNGC	9 cut(s)	65, 94, 116, 128, 167, 355, 700, 1177, 2785
PleI	GAGTC	2 cut(s)	1392, 3076
PpsI	GAGTC	2 cut(s)	1392, 3076
Ppu21I	YACGTR	1 cut(s)	1100
PshBI	ATTAAT	1 cut(s)	911
PsiI	TTATAA	1 cut(s)	2546
Psp124BI	GAGCTC	2 cut(s)	156, 2834
Psp6I	CCWGG	9 cut(s)	460, 667, 986, 1162, 1597, 1914, 2578, 3030, 3037
PspEI	GGTNACC	1 cut(s)	2317
PspGI	CCWGG	9 cut(s)	460, 667, 986, 1162, 1597, 1914, 2578, 3030, 3037
PspN4I	GGNNCC	5 cut(s)	1623, 1995, 2363, 3036, 3257
PspPI	GGNCC	4 cut(s)	1622, 2192, 2616, 3041
PspXI	VCTCGAGB	2 cut(s)	567, 3297
PstI	CTGCAG	2 cut(s)	1899, 2416
PstNI	CAGNNNCTG	1 cut(s)	1175
PsuI	RGATCY	3 cut(s)	366, 635, 1531
PvuII	CAGCTG	2 cut(s)	1217, 1613
RsaI	GTAC	9 cut(s)	742, 1102, 2216, 2363, 2443, 2858, 3063, 3188, 3324
RsaNI	GTAC	9 cut(s)	741, 1101, 2215, 2362, 2442, 2857, 3062, 3187, 3323
RseI	CAYNNNNRTG	6 cut(s)	687, 1262, 1475, 2102, 2315, 2759
SacI	GAGCTC	2 cut(s)	156, 2834
SapI	GCTCTTC	2 cut(s)	2073, 2839
SatI	GCNGC	9 cut(s)	64, 93, 115, 127, 166, 354, 699, 1176, 2784
Sau3AI	GATC	9 cut(s)	366, 635, 749, 1166, 1531, 2154, 2881, 2948, 3241
Sau96I	GGNCC	4 cut(s)	1622, 2192, 2616, 3041
ScaI	AGTACT	3 cut(s)	2216, 2443, 3063
SchI	GAGTC	2 cut(s)	1393, 3076
SduI	GDGCHC	6 cut(s)	156, 350, 654, 1685, 2734, 2834
SfaNI	GCATC	6 cut(s)	22, 234, 1162, 1811, 2337, 2417
SfcI	CTRYAG	3 cut(s)	1895, 2412, 2655
Sfr274I	CTCGAG	2 cut(s)	567, 3297
SinI	GGWCC	2 cut(s)	1622, 2192
SlaI	CTCGAG	2 cut(s)	567, 3297
SmiMI	CAYNNNNRTG	6 cut(s)	687, 1262, 1475, 2102, 2315, 2759
SmlI	CTYRAG	3 cut(s)	160, 567, 3297
SmoI	CTYRAG	3 cut(s)	160, 567, 3297
SphI	GCATGC	2 cut(s)	586, 1073
SspI	AATATT	1 cut(s)	2603
SspMI	CTAG	7 cut(s)	1313, 2121, 2478, 2643, 2678, 2909, 3086
SstI	GAGCTC	2 cut(s)	156, 2834
StyI	CCWWGG	1 cut(s)	1659
TaiI	ACGT	5 cut(s)	237, 512, 1102, 1547, 2077
TaqI	TCGA	9 cut(s)	231, 340, 505, 531, 568, 815, 1278, 2071, 3298
TatI	WGTACW	3 cut(s)	2214, 2441, 3061
TauI	GCSGC	5 cut(s)	66, 95, 117, 168, 356
TfiI	GAWTC	8 cut(s)	104, 275, 1146, 1801, 1883, 1910, 1941, 2685
TscAI	CASTG	9 cut(s)	710, 1692, 1736, 2187, 2202, 2633, 2766, 3024, 3289
TseFI	GTSAC	3 cut(s)	1579, 2317, 2417
TseI	GCWGC	4 cut(s)	126, 698, 1175, 2783
Tsp45I	GTSAC	3 cut(s)	1579, 2317, 2417
TspGWI	ACGGA	2 cut(s)	182, 750
TspRI	CASTG	9 cut(s)	710, 1692, 1736, 2187, 2202, 2633, 2766, 3024, 3289
VneI	GTGCAC	3 cut(s)	346, 1681, 2730
VpaK11BI	GGWCC	2 cut(s)	1622, 2192
VspI	ATTAAT	1 cut(s)	911
XapI	RAATTY	3 cut(s)	21, 1389, 1783
XbaI	TCTAGA	1 cut(s)	1312
XceI	RCATGY	2 cut(s)	586, 1073
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2029, 3051
XhoI	CTCGAG	2 cut(s)	567, 3297
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	1145
XspI	CTAG	7 cut(s)	1313, 2121, 2478, 2643, 2678, 2909, 3086
ZrmI	AGTACT	3 cut(s)	2216, 2443, 3063
Zsp2I	ATGCAT	1 cut(s)	1405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.