Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003083

Physical Location & Seq

Genomic Coordinates Forward (+)

2262217 .. 2262732

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG033200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTCTCCAGCGTCTCCGAATGGTAGCTGGTCTGGTGAGTCGGAAGAACATCAACACAAAACATCTAGTCCTCCCGTTAAGCCAGAGACAGTACCGGGAACTGACAATGACAACAGCCAGCAAACTCAAGAGTTGCATGAGCGATGTCGTGGTTTTCTTATGTCGACAAAATTGAGGGCACTTGCTCAACAGATGACGGCGATTGGTTTTACGCTAGAACTGGCAACAGAGGCTCTCATTTGCAATGAAGGCAGTGAAATTAATTCGAAACTTGACATAACAGAAGAGCTTGCTCAGATTGCTGATCTAGAATCAAGGTTTAAGTGCTCAAAACAGGAGGTTGAAAGAGCTATTATCGCCTGTGAGGGTGATATTCAAAAGGCTGCTGAAAGCTTAAGAGCATCAAAGCAAGACCCACCTTCGATTTCACCTAAGCCAGAAGAAACTGGTGACCCTCTAGTTAGTTTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.09

Weight (kDa)

4.7

Isoelectric Point (pI)

64.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60740
fragaria_vesca	FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510
malus_domestica	MD03G1123900.v1.1 MD11G1140900.v1.1
prunus_persica	Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1
pyrus_communis	pycom11g11690
rosa_chinensis	RchiOBHm_Chr5g0058181
rosa_laevigata	RLG00000035201
rosa_multiflora	Rmu_co8117600.1_g000001 Rmu_sc0000367.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022350 Rroxscaffold_1G00072570
rosa_rugosa	Rorug04G0431300 Rorug05G0312500 Rorug05G0312600
rosa_samantha	Rh5AG033200 Rh5AG380400 Rh5BG391600 Rh5CG035900 Rh5CG415600 Rh5DG028700
rosa_wichuraiana	Rw5G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	164
AfaI	GTAC	1 cut(s)	93
AflII	CTTAAG	1 cut(s)	394
AgsI	TTSAA	2 cut(s)	344, 377
AluBI	AGCT	4 cut(s)	27, 289, 350, 393
AluI	AGCT	4 cut(s)	27, 289, 350, 393
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	3 cut(s)	9, 18, 80
ApeKI	GCWGC	1 cut(s)	383
AseI	ATTAAT	1 cut(s)	261
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	4 cut(s)	47, 380, 420, 461
AsuII	TTCGAA	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	370
BceAI	ACGGC	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	3 cut(s)	9, 18, 80
BfaI	CTAG	4 cut(s)	66, 215, 308, 458
BfrI	CTTAAG	1 cut(s)	394
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	410
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	96
Bse1I	ACTGG	2 cut(s)	225, 451
Bse3DI	GCAATG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	2 cut(s)	225, 451
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	95
BsmAI	GTCTC	3 cut(s)	9, 18, 80
BsmBI	CGTCTC	1 cut(s)	18
Bsp119I	TTCGAA	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	181, 329
Bsp143I	GATC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	279
BspT104I	TTCGAA	1 cut(s)	266
BspTI	CTTAAG	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	225, 451
BssMI	GATC	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	394
BstBI	TTCGAA	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	119, 291
BstDEI	CTNAG	2 cut(s)	294, 432
BstEII	GGTNACC	1 cut(s)	449
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	3 cut(s)	9, 18, 80
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 249, 299, 356
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	94
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	370
BtgZI	GCGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	119, 291
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	9 cut(s)	27, 82, 117, 233, 289, 350, 383, 393, 436
CviKI_1	RGCY	9 cut(s)	27, 82, 117, 233, 289, 350, 383, 393, 436
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	2 cut(s)	294, 432
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco91I	GGTNACC	1 cut(s)	449
EcoO65I	GGTNACC	1 cut(s)	449
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	1 cut(s)	140
FaiI	YATR	3 cut(s)	138, 161, 278
FatI	CATG	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	164
Fnu4HI	GCNGC	1 cut(s)	384
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	4 cut(s)	66, 215, 308, 458
GluI	GCNGC	1 cut(s)	384
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	2 cut(s)	38, 311
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	4 cut(s)	47, 380, 420, 461
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	3 cut(s)	18, 43, 297
Hpy188III	TCNNGA	2 cut(s)	128, 308
Hpy8I	GTNNAC	1 cut(s)	165
HpyAV	CCTTC	2 cut(s)	242, 429
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	136, 243
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 249, 299, 356
HpyF3I	CTNAG	2 cut(s)	294, 432
Hsp92II	CATG	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	304
LguI	GCTCTTC	1 cut(s)	279
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	4 cut(s)	66, 215, 308, 458
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	3 cut(s)	56, 296, 452
MhlI	GDGCHC	2 cut(s)	181, 329
MluCI	AATT	3 cut(s)	170, 258, 262
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	6 cut(s)	81, 168, 223, 331, 358, 465
MseI	TTAA	4 cut(s)	78, 261, 321, 395
MspCI	CTTAAG	1 cut(s)	394
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	230, 249, 299, 356
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	449
NspV	TTCGAA	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	261
PspEI	GGTNACC	1 cut(s)	449
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SalI	GTCGAC	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	78, 261, 321, 395
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	181, 329
SetI	ASST	8 cut(s)	29, 291, 320, 342, 352, 395, 421, 433
SfaNI	GCATC	1 cut(s)	410
SfuI	TTCGAA	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	126, 394
SmoI	CTYRAG	2 cut(s)	126, 394
Sse9I	AATT	3 cut(s)	170, 258, 262
SspMI	CTAG	4 cut(s)	66, 215, 308, 458
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	3 cut(s)	164, 266, 422
TasI	AATT	3 cut(s)	170, 258, 262
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	4 cut(s)	78, 261, 321, 395
Tru9I	TTAA	4 cut(s)	78, 261, 321, 395
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	259
Vha464I	CTTAAG	1 cut(s)	394
VspI	ATTAAT	1 cut(s)	261
XbaI	TCTAGA	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	164
XspI	CTAG	4 cut(s)	66, 215, 308, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.