Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003083

Physical Location & Seq

Genomic Coordinates Forward (+)

64923934 .. 64935784

Gene Structure 11851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG380400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3111 bp

ATGTTCAGCAGAGAGCACCTCTTTCTCTCTCTTAGGGTTCTTCTCCATGTGCTCGCTCTCAGCCTTGTTTGGCCCCCGGCGCCGCGTGTTTTCAGCCAGGACGTCGGCGGCGGCGATGGCGGTGGCGGTGGCGGAGGCGATGGCGATGGCGGAGGTGGAGGTGATGTCGATGTCGGTGGTGGTGGAGGAGGAGACGGAGTCTCTGCCGGGTATAAGGGCTTCACCACCGAACTCATCTTGAGTCGTTTCTCCAATGTCACCCCCATTCTCAAAGATGAACTCAAGGATTCGTTCAGCTACTGCGTCATTGACGTAGACGAGGATTGGAATGGGGCTTTCAATTTCTCAGACGATGCAACATTCATTGCCAACTGCGCCAAAAAAATGAAAGGTGGAGGTTTGGGAAAGATTACGCAGCGGTTGTGCACTTTTAAAGAATTATCGATGTATGGTGAAAGTTTAGTACAAGTCAAGAAAAGCAGTAAATTGAAACCGAATAAGAACTGTAACCTGTCTACATGGAATCCCGGATGTGAACCTGGGTGGGCTTGTGGAACTACTGAGGAAGTTGACGTGAAAAATAAAACATATGTGCCTGCCAGAACTGAAGACTGTGCACCTTGTTGTGAGGGTTTTTTCTGCCCTCATGGTCTTACTTGCATGATCCCTTGCCCAAAAGGTGCTTACTGCCCACTTGGAAAGCTCAATAGCACTACTGGTATATGCGTGCCATACCGTTATCACCTACCTCCAGGGAAGTCAAACCACACTTGTGGAGGAGCAGATAGGTGGGCTGATGTCTTGAGTAGTAAAGAGGTATTCTGTTCGGGTGGATCATACTGTCCGTCTAGCATCCAAAAAAATCCTTGCAGTAGTGGACATTATTGCAGGCTGGGCTCCACATCTCAGGAAGGATGTTTCAAAATGGCAAGTTGTAATGCGAAATCAGAAAATCAAAATATTACTGCATATGGTATCATGCTTTTTGCTGCAATAATAGTTATACTTATTATTATATATAACTGTACTGATCAAGTGCTTGCCACCCGAGAGAAAAGACAAGCAAAATCCAGGGAAAAGGCTGTTCAAAGTGTAAGGGAAACAGCACAAGCACGTGAAAAATGGAAATCTGCAAAAGACATTGCTAAGAAGCATGCTGTTGGACTCTCAACACAGTTTTCACGTACATTTTCTCGCAGAAAATCCACCAGGCATTCGGACCAGCTGAAAGGAACAGGACAAGCTAAACCTGGAACAGATGGTGCCTTGCCACCTATGCCACTGACTGCGATAGGTGCATCTGAAGCAGCAACATCTAAAGGAAAGAAAAAGGAAAAAAGCAACCTCACACAAATGTTACATGCTATTGAGGATGACCCAGATAGTAATGAAGGCTTTAATCTAGAGATAGGTGATAAAAATATTAAAAAGCACGCACCAAAAGGTAAGCAGTTGCATACCCAAAGCCAGATTTTCAAGTATGCATATGGTCAAATTGAGAAGGAAAAGGCTTTACAGGAGCAGACAGCAAACTTAACCTTCTCTGGGGTTATACAAATGGCTGGTGGAATTGAAATCCAAAAGAGGCCTCCAATTGAGGTTGCTTTTAAAGATCTAACCCTCACATTGAAAGGGAAGAATTTACATCTTATGAGATGTGTGACTGGGAAAATATCACCAGGCCGGGTTTCAGCTGTCATGGGTCCATCTGGAGCAGGAAAAACAACTTTTCTTAATGCTTTGTTAGGAAAAGTTAGAGGGTGCACCATGAGTGGTATGGTTCTTGTAAATGGAAAGATGGAATCTATCAACTCATATAAGAAAATCATAGGCTTTGTTCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAAGAAAATCTCTGGTTCAGCGCAAGATGCAGACTCTCTTCCAATCTGCCTCAACCGGAAAAGGTCCTGGTTGTTGAAAGAGTTATTGAATCCTTGGGCTTGCAGGCGGTGCGGGATTCCCTGGTTGGAACTGTAGAGAAGCGAGGAATCTCTGGAGGTCAAAGAAAAAGAGTAAATGTTGGGCTGGAAATGGTCATGGAACCATCACTTCTAATTTTAGATGAACCCACATCTGGTTTGGATAGTTCATCTTCTAATCTGCTACTTAGAGCTCTTAGACGTGAGGCTCTTGAAGGAGTTAACATTTGCATGGTTGTCCACCAGCCCAGCTACACCTTGTTCAGGATGTTTGATGATTTGATACTTCTCGCTAAAGGTGGGCTTACAGTGTATCATGGATCAGTGAAGAAAGTTGAAGAGTACTTCAAGAGCCTTGGGATTATTGTTCCTGATCGTGTCAATCCTCCAGACTATTTCATTGACATTTTGGAAGGCTTAGTAAAACCAAGCACAAGCTCAGGGGTGGACTATAAACAACTACCCGTTAGGTGGATGCTTCATAATGGGTATCCAGTTCCTATGGATATGCTTCAGACTTCTGAGGGAATGGCTGCATCAACAAGTGACAGTTCAGCCCATGATTCTGGATCGGAGGGTTTTTGGCAGGATGTCAAGTGTAATGTTGAGGTGAAAAAGGACAATATACAGCATAATCTCTTAAAGTCAAGTGACTTATCGGAGCGGATTACCCCTGGCATGTTCCTGCAATATAGATACTTCCTTGGCAGGGTTGGTAAGCAGCGATTACGAGAATCGAGGACACAAGCAATAGATTTTCTTATTTTATTGCTTGCTGGATCATGCTTAGGAGTTCTTGCTAAAGTAAGCGAGGAGACCTTCGGTTATCATGGTTATATGTACACCGTCATAGCAGTTTCTCTCCTTGGCAAGATTGCAGCTTTGAGAACGTTTGGACTGGATAAGTTGCACTACTGGAGAGAGAGCTCTGCTGGCATGAGTAGCTTGGCTTACTTTCTTTCAAAAGATACAGTGGACCATTTTAATACGGTCATCAAGCCTCTCGTTTACCTCTCCATGTTCTATTTCTTCAACAATCCAAGATCATCTGTCACAGATAATTATGTCGTTTTGTTATGTTTGGTTTACTGCGTAACTGGTATAGCTTATGCCTTGTCCATATACCTGGCTCCCGGTCCAGCTCAACTGGTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

1036

Amino Acids

112.94

Weight (kDa)

8.83

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	554 - 703	1.1e-23	ABC transporter
ABC2_membrane_7	PF19055	732 - 1035	3.1e-167	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60740
fragaria_vesca	FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510
malus_domestica	MD03G1123900.v1.1 MD11G1140900.v1.1
prunus_persica	Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1
pyrus_communis	pycom11g11690
rosa_chinensis	RchiOBHm_Chr5g0058181
rosa_laevigata	RLG00000035201
rosa_multiflora	Rmu_co8117600.1_g000001 Rmu_sc0000367.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022350 Rroxscaffold_1G00072570
rosa_rugosa	Rorug04G0431300 Rorug05G0312500 Rorug05G0312600
rosa_samantha	Rh5AG033200 Rh5AG380400 Rh5BG391600 Rh5CG035900 Rh5CG415600 Rh5DG028700
rosa_wichuraiana	Rw5G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
AccB1I	GGYRCC	2 cut(s)	79, 1262
AccBSI	CCGCTC	1 cut(s)	2617
AccI	GTMKAC	2 cut(s)	315, 515
AccII	CGCG	1 cut(s)	85
AclI	AACGTT	1 cut(s)	2843
AclWI	GGATC	5 cut(s)	658, 841, 2281, 2530, 2740
AcsI	RAATTY	1 cut(s)	1639
AcuI	CTGAAG	3 cut(s)	627, 1323, 2450
AcvI	CACGTG	1 cut(s)	1115
AcyI	GRCGYC	2 cut(s)	80, 102
AfaI	GTAC	5 cut(s)	465, 1027, 1186, 2297, 2795
AfiI	CCNNNNNNNGG	5 cut(s)	1545, 2108, 2217, 2424, 2662
AjiI	CACGTC	2 cut(s)	574, 2156
AleI	CACNNNNGTG	1 cut(s)	771
Alw21I	GWGCWC	7 cut(s)	18, 54, 428, 619, 1766, 2149, 2882
Alw26I	GTCTC	3 cut(s)	186, 205, 2762
Alw44I	GTGCAC	3 cut(s)	424, 615, 1762
AlwI	GGATC	5 cut(s)	658, 841, 2281, 2530, 2740
AlwNI	CAGNNNCTG	1 cut(s)	300
Ama87I	CYCGRG	1 cut(s)	1047
AoxI	GGCC	3 cut(s)	71, 1586, 1681
ApaLI	GTGCAC	3 cut(s)	424, 615, 1762
ApeKI	GCWGC	6 cut(s)	415, 989, 1307, 2486, 2674, 2831
ApoI	RAATTY	1 cut(s)	1639
AspLEI	GCGC	3 cut(s)	82, 377, 1898
AspS9I	GGNCC	6 cut(s)	72, 1219, 1703, 1939, 2929, 3089
AsuC2I	CCSGG	5 cut(s)	77, 208, 528, 1685, 3087
AsuHPI	GGTGA	8 cut(s)	173, 214, 250, 464, 734, 1424, 1668, 2575
AvaI	CYCGRG	1 cut(s)	1047
AvaII	GGWCC	5 cut(s)	1219, 1703, 1939, 2929, 3089
BaeGI	GKGCMC	3 cut(s)	428, 619, 1766
BanI	GGYRCC	2 cut(s)	79, 1262
BanII	GRGCYC	3 cut(s)	899, 2149, 2882
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BbrPI	CACGTG	1 cut(s)	1115
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	7 cut(s)	18, 54, 428, 619, 1766, 2149, 2882
BbvI	GCAGC	6 cut(s)	427, 976, 1319, 2473, 2686, 2843
BccI	CCATC	7 cut(s)	110, 134, 140, 1253, 1714, 1792, 2086
BciVI	GTATCC	1 cut(s)	2454
BclI	TGATCA	1 cut(s)	1030
BcnI	CCSGG	5 cut(s)	77, 208, 528, 1685, 3087
BcoDI	GTCTC	3 cut(s)	186, 205, 2762
BfaI	CTAG	2 cut(s)	849, 1403
BfmI	CTRYAG	1 cut(s)	2007
BfoI	RGCGCY	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	2454
BglII	AGATCT	1 cut(s)	1612
BisI	GCNGC	9 cut(s)	83, 109, 112, 416, 990, 1308, 2487, 2675, 2832
BlsI	GCNGC	9 cut(s)	84, 110, 113, 417, 991, 1309, 2488, 2676, 2833
BmcAI	AGTACT	1 cut(s)	2297
Bme18I	GGWCC	5 cut(s)	1219, 1703, 1939, 2929, 3089
BmeT110I	CYCGRG	1 cut(s)	1047
BmgBI	CACGTC	2 cut(s)	574, 2156
BmgT120I	GGNCC	6 cut(s)	72, 1219, 1703, 1939, 2929, 3089
BmiI	GGNNCC	7 cut(s)	74, 81, 898, 1264, 1704, 2076, 3084
BmrI	ACTGGG	1 cut(s)	1674
BmsI	GCATC	6 cut(s)	343, 861, 1307, 1892, 2418, 2498
BmuI	ACTGGG	1 cut(s)	1674
BpiI	GAAGAC	1 cut(s)	615
BplI	GAGNNNNNCTC	1 cut(s)	35
BpmI	CTGGAG	5 cut(s)	735, 1731, 2049, 2325, 2890
Bpu10I	CCTNAGC	2 cut(s)	2392, 2740
BpuEI	CTTGAG	3 cut(s)	259, 266, 823
BpuMI	CCSGG	5 cut(s)	77, 208, 528, 1685, 3087
Bsa29I	ATCGAT	1 cut(s)	443
BsaAI	YACGTR	2 cut(s)	1115, 1184
BsaHI	GRCGYC	2 cut(s)	80, 102
BsaI	GGTCTC	1 cut(s)	2762
BsaWI	WCCGGW	1 cut(s)	1930
BsaXI	ACNNNNNCTCC	4 cut(s)	150, 180, 183, 213
Bsc4I	CCNNNNNNNGG	5 cut(s)	1545, 2108, 2217, 2424, 2662
Bse1I	ACTGG	7 cut(s)	721, 1669, 2447, 2856, 2873, 3055, 3105
Bse3DI	GCAATG	2 cut(s)	363, 1140
BseCI	ATCGAT	1 cut(s)	443
BseGI	GGATG	7 cut(s)	536, 852, 920, 1378, 2226, 2433, 2548
BseLI	CCNNNNNNNGG	5 cut(s)	1545, 2108, 2217, 2424, 2662
BseMI	GCAATG	2 cut(s)	363, 1140
BseMII	CTCAG	6 cut(s)	73, 360, 552, 920, 2406, 2466
BseNI	ACTGG	7 cut(s)	721, 1669, 2447, 2856, 2873, 3055, 3105
BseRI	GAGGAG	4 cut(s)	201, 204, 792, 2780
BseSI	GKGCMC	3 cut(s)	428, 619, 1766
BseXI	GCAGC	6 cut(s)	427, 976, 1319, 2473, 2686, 2843
BseYI	CCCAGC	2 cut(s)	892, 2201
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	73, 1588, 1683
BshNI	GGYRCC	2 cut(s)	79, 1262
BshVI	ATCGAT	1 cut(s)	443
BsiHKAI	GWGCWC	7 cut(s)	18, 54, 428, 619, 1766, 2149, 2882
BsiHKCI	CYCGRG	1 cut(s)	1047
BsiSI	CCGG	6 cut(s)	77, 207, 528, 1684, 1931, 3087
BslI	CCNNNNNNNGG	5 cut(s)	1545, 2108, 2217, 2424, 2662
BsmAI	GTCTC	3 cut(s)	186, 205, 2762
BsmBI	CGTCTC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	1213
BsnI	GGCC	3 cut(s)	73, 1588, 1683
Bso31I	GGTCTC	1 cut(s)	2762
BsoBI	CYCGRG	1 cut(s)	1047
Bsp1286I	GDGCHC	8 cut(s)	18, 54, 428, 619, 899, 1766, 2149, 2882
Bsp1407I	TGTACA	1 cut(s)	2793
Bsp143I	GATC	9 cut(s)	663, 833, 1030, 1612, 2273, 2326, 2522, 2732, 2996
BspANI	GGCC	3 cut(s)	73, 1588, 1683
BspCNI	CTCAG	6 cut(s)	72, 359, 553, 919, 2405, 2467
BspDI	ATCGAT	1 cut(s)	443
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	7 cut(s)	74, 81, 898, 1264, 1704, 2076, 3084
BspPI	GGATC	5 cut(s)	658, 841, 2281, 2530, 2740
BspT107I	GGYRCC	2 cut(s)	79, 1262
BspTNI	GGTCTC	1 cut(s)	2762
BsrBI	CCGCTC	1 cut(s)	2617
BsrDI	GCAATG	2 cut(s)	363, 1140
BsrGI	TGTACA	1 cut(s)	2793
BsrI	ACTGG	7 cut(s)	721, 1669, 2447, 2856, 2873, 3055, 3105
BssMI	GATC	9 cut(s)	663, 833, 1030, 1612, 2273, 2326, 2522, 2732, 2996
BssNI	GRCGYC	2 cut(s)	80, 102
BssT1I	CCWWGG	4 cut(s)	1968, 2308, 2656, 2818
Bst6I	CTCTTC	2 cut(s)	1918, 2286
BstACI	GRCGYC	2 cut(s)	80, 102
BstAPI	GCANNNNNTGC	1 cut(s)	1984
BstAUI	TGTACA	1 cut(s)	2793
BstBAI	YACGTR	2 cut(s)	1115, 1184
BstENI	CCTNNNNNAGG	1 cut(s)	2215
BstF5I	GGATG	7 cut(s)	536, 852, 920, 1378, 2226, 2433, 2548
BstFNI	CGCG	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	3 cut(s)	82, 377, 1898
BstKTI	GATC	9 cut(s)	666, 836, 1033, 1615, 2276, 2329, 2525, 2735, 2999
BstMAI	GTCTC	3 cut(s)	186, 205, 2762
BstMBI	GATC	9 cut(s)	663, 833, 1030, 1612, 2273, 2326, 2522, 2732, 2996
BstNSI	RCATGY	3 cut(s)	1157, 1364, 2635
BstSFI	CTRYAG	1 cut(s)	2007
BstSLI	GKGCMC	3 cut(s)	428, 619, 1766
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	6 cut(s)	427, 976, 1319, 2473, 2686, 2843
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	1612
BstXI	CCANNNNNNTGG	3 cut(s)	773, 2519, 3079
BstYI	RGATCY	1 cut(s)	1612
Bsu15I	ATCGAT	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	2454
BsuRI	GGCC	3 cut(s)	73, 1588, 1683
BsuTUI	ATCGAT	1 cut(s)	443
BtgZI	GCGATG	3 cut(s)	129, 153, 159
BtrI	CACGTC	2 cut(s)	574, 2156
BtsCI	GGATG	7 cut(s)	536, 852, 920, 1378, 2226, 2433, 2548
BtsIMutI	CAGTG	5 cut(s)	1280, 1878, 2268, 2283, 2931
CaiI	CAGNNNCTG	1 cut(s)	300
CfoI	GCGC	3 cut(s)	82, 377, 1898
Cfr13I	GGNCC	6 cut(s)	72, 1219, 1703, 1939, 2929, 3089
ClaI	ATCGAT	1 cut(s)	443
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	5 cut(s)	464, 1026, 1185, 2296, 2794
CviQI	GTAC	5 cut(s)	464, 1026, 1185, 2296, 2794
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	9 cut(s)	665, 835, 1032, 1614, 2275, 2328, 2524, 2734, 2998
DpnII	GATC	9 cut(s)	663, 833, 1030, 1612, 2273, 2326, 2522, 2732, 2996
DraI	TTTAAA	2 cut(s)	433, 1609
Eam1104I	CTCTTC	2 cut(s)	1918, 2286
EarI	CTCTTC	2 cut(s)	1918, 2286
EciI	GGCGGA	2 cut(s)	147, 165
Ecl136II	GAGCTC	2 cut(s)	2147, 2880
Eco130I	CCWWGG	4 cut(s)	1968, 2308, 2656, 2818
Eco147I	AGGCCT	1 cut(s)	1588
Eco24I	GRGCYC	3 cut(s)	899, 2149, 2882
Eco31I	GGTCTC	1 cut(s)	2762
Eco47I	GGWCC	5 cut(s)	1219, 1703, 1939, 2929, 3089
Eco53kI	GAGCTC	2 cut(s)	2147, 2880
Eco57I	CTGAAG	3 cut(s)	627, 1323, 2450
Eco72I	CACGTG	1 cut(s)	1115
Eco88I	CYCGRG	1 cut(s)	1047
EcoICRI	GAGCTC	2 cut(s)	2147, 2880
EcoNI	CCTNNNNNAGG	1 cut(s)	2215
EcoO109I	RGGNCCY	1 cut(s)	1939
EcoT14I	CCWWGG	4 cut(s)	1968, 2308, 2656, 2818
EcoT22I	ATGCAT	1 cut(s)	1486
EcoT38I	GRGCYC	3 cut(s)	899, 2149, 2882
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
ErhI	CCWWGG	4 cut(s)	1968, 2308, 2656, 2818
Esp3I	CGTCTC	1 cut(s)	186
FalI	AAGNNNNNCTT	2 cut(s)	2241, 2273
FauI	CCCGC	1 cut(s)	1980
FauNDI	CATATG	3 cut(s)	589, 970, 1486
FbaI	TGATCA	1 cut(s)	1030
FblI	GTMKAC	2 cut(s)	315, 515
Fnu4HI	GCNGC	9 cut(s)	83, 109, 112, 416, 990, 1308, 2487, 2675, 2832
FokI	GGATG	7 cut(s)	543, 839, 927, 1385, 2233, 2440, 2555
FriOI	GRGCYC	3 cut(s)	899, 2149, 2882
Fsp4HI	GCNGC	9 cut(s)	83, 109, 112, 416, 990, 1308, 2487, 2675, 2832
FspBI	CTAG	2 cut(s)	849, 1403
GlaI	GCGC	3 cut(s)	81, 376, 1897
GluI	GCNGC	9 cut(s)	83, 109, 112, 416, 990, 1308, 2487, 2675, 2832
GsaI	CCCAGC	2 cut(s)	896, 2205
GsuI	CTGGAG	5 cut(s)	735, 1731, 2049, 2325, 2890
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	73, 1588, 1683
HapII	CCGG	6 cut(s)	77, 207, 528, 1684, 1931, 3087
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	3 cut(s)	82, 377, 1898
Hin1I	GRCGYC	2 cut(s)	80, 102
Hin6I	GCGC	3 cut(s)	80, 375, 1896
HinP1I	GCGC	3 cut(s)	80, 375, 1896
HincII	GTYRAC	2 cut(s)	571, 2176
HindII	GTYRAC	2 cut(s)	571, 2176
HpaI	GTTAAC	1 cut(s)	2176
HpaII	CCGG	6 cut(s)	77, 207, 528, 1684, 1931, 3087
HphI	GGTGA	8 cut(s)	173, 214, 250, 464, 734, 1424, 1668, 2575
Hpy188I	TCNGA	8 cut(s)	349, 949, 1219, 1303, 2469, 2476, 2527, 2614
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	7 cut(s)	905, 1385, 1495, 1549, 2162, 2360, 2782
HpyCH4IV	ACGT	7 cut(s)	102, 312, 573, 1114, 1183, 2155, 2843
HpySE526I	ACGT	7 cut(s)	102, 312, 573, 1114, 1183, 2155, 2843
Hsp92I	GRCGYC	2 cut(s)	80, 102
HspAI	GCGC	3 cut(s)	80, 375, 1896
KasI	GGCGCC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	1030
KspAI	GTTAAC	1 cut(s)	2176
Kzo9I	GATC	9 cut(s)	663, 833, 1030, 1612, 2273, 2326, 2522, 2732, 2996
LmnI	GCTCC	6 cut(s)	779, 902, 1519, 1712, 2614, 3088
Lsp1109I	GCAGC	6 cut(s)	427, 976, 1319, 2473, 2686, 2843
LweI	GCATC	6 cut(s)	343, 861, 1307, 1892, 2418, 2498
MaeI	CTAG	2 cut(s)	849, 1403
MaeII	ACGT	7 cut(s)	102, 312, 573, 1114, 1183, 2155, 2843
MaeIII	GTNAC	8 cut(s)	256, 506, 1356, 1660, 2498, 2603, 3004, 3046
MalI	GATC	9 cut(s)	665, 835, 1032, 1614, 2275, 2328, 2524, 2734, 2998
MbiI	CCGCTC	1 cut(s)	2617
MboI	GATC	9 cut(s)	663, 833, 1030, 1612, 2273, 2326, 2522, 2732, 2996
MboII	GAAGA	9 cut(s)	32, 620, 1648, 1889, 1905, 2118, 2293, 2303, 2974
MfeI	CAATTG	1 cut(s)	1593
MflI	RGATCY	1 cut(s)	1612
MhlI	GDGCHC	8 cut(s)	18, 54, 428, 619, 899, 1766, 2149, 2882
Mly113I	GGCGCC	1 cut(s)	80
MlyI	GAGTC	4 cut(s)	207, 250, 1158, 1902
MmeI	TCCRAC	2 cut(s)	1141, 1981
Mph1103I	ATGCAT	1 cut(s)	1486
MseI	TTAA	9 cut(s)	432, 1398, 1425, 1535, 1608, 1734, 2175, 2594, 2937
MslI	CAYNNNNRTG	3 cut(s)	771, 1352, 2183
MspA1I	CMGCKG	3 cut(s)	418, 1225, 1694
MspI	CCGG	6 cut(s)	77, 207, 528, 1684, 1931, 3087
MunI	CAATTG	1 cut(s)	1593
Mva1269I	GAATGC	1 cut(s)	1213
MvnI	CGCG	1 cut(s)	85
NarI	GGCGCC	1 cut(s)	80
NciI	CCSGG	5 cut(s)	77, 208, 528, 1685, 3087
NdeI	CATATG	3 cut(s)	589, 970, 1486
NdeII	GATC	9 cut(s)	663, 833, 1030, 1612, 2273, 2326, 2522, 2732, 2996
NlaIV	GGNNCC	7 cut(s)	74, 81, 898, 1264, 1704, 2076, 3084
NmuCI	GTSAC	5 cut(s)	256, 1660, 2498, 2603, 3004
NsiI	ATGCAT	1 cut(s)	1486
NspI	RCATGY	3 cut(s)	1157, 1364, 2635
OliI	CACNNNNGTG	1 cut(s)	771
PaeI	GCATGC	1 cut(s)	1157
PceI	AGGCCT	1 cut(s)	1588
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	1213
PfeI	GAWTC	8 cut(s)	287, 523, 1802, 1964, 1991, 2022, 2516, 2687
PflFI	GACNNNGTC	1 cut(s)	197
PfoI	TCCNGGA	1 cut(s)	526
PkrI	GCNGC	9 cut(s)	84, 110, 113, 417, 991, 1309, 2488, 2676, 2833
PleI	GAGTC	4 cut(s)	206, 249, 1158, 1902
PluTI	GGCGCC	1 cut(s)	83
PmaCI	CACGTG	1 cut(s)	1115
PmlI	CACGTG	1 cut(s)	1115
PpsI	GAGTC	4 cut(s)	206, 249, 1158, 1902
Ppu21I	YACGTR	2 cut(s)	1115, 1184
PpuMI	RGGWCCY	1 cut(s)	1939
Psp124BI	GAGCTC	2 cut(s)	2149, 2882
Psp1406I	AACGTT	1 cut(s)	2843
Psp5II	RGGWCCY	1 cut(s)	1939
PspCI	CACGTG	1 cut(s)	1115
PspFI	CCCAGC	2 cut(s)	892, 2201
PspN4I	GGNNCC	7 cut(s)	74, 81, 898, 1264, 1704, 2076, 3084
PspPI	GGNCC	6 cut(s)	72, 1219, 1703, 1939, 2929, 3089
PspPPI	RGGWCCY	1 cut(s)	1939
PstNI	CAGNNNCTG	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	1612
PsyI	GACNNNGTC	1 cut(s)	197
PvuII	CAGCTG	2 cut(s)	1225, 1694
RsaI	GTAC	5 cut(s)	465, 1027, 1186, 2297, 2795
RsaNI	GTAC	5 cut(s)	464, 1026, 1185, 2296, 2794
RseI	CAYNNNNRTG	3 cut(s)	771, 1352, 2183
SacI	GAGCTC	2 cut(s)	2149, 2882
SaqAI	TTAA	9 cut(s)	432, 1398, 1425, 1535, 1608, 1734, 2175, 2594, 2937
SatI	GCNGC	9 cut(s)	83, 109, 112, 416, 990, 1308, 2487, 2675, 2832
Sau3AI	GATC	9 cut(s)	663, 833, 1030, 1612, 2273, 2326, 2522, 2732, 2996
Sau96I	GGNCC	6 cut(s)	72, 1219, 1703, 1939, 2929, 3089
ScaI	AGTACT	1 cut(s)	2297
SchI	GAGTC	4 cut(s)	207, 250, 1158, 1902
SduI	GDGCHC	8 cut(s)	18, 54, 428, 619, 899, 1766, 2149, 2882
SfaNI	GCATC	6 cut(s)	343, 861, 1307, 1892, 2418, 2498
SfcI	CTRYAG	1 cut(s)	2007
SfoI	GGCGCC	1 cut(s)	81
SinI	GGWCC	5 cut(s)	1219, 1703, 1939, 2929, 3089
SmiMI	CAYNNNNRTG	3 cut(s)	771, 1352, 2183
SmlI	CTYRAG	3 cut(s)	238, 281, 802
SmoI	CTYRAG	3 cut(s)	238, 281, 802
SphI	GCATGC	1 cut(s)	1157
SseBI	AGGCCT	1 cut(s)	1588
SspDI	GGCGCC	1 cut(s)	79
SspI	AATATT	2 cut(s)	961, 1423
SspMI	CTAG	2 cut(s)	849, 1403
SstI	GAGCTC	2 cut(s)	2149, 2882
StuI	AGGCCT	1 cut(s)	1588
StyI	CCWWGG	4 cut(s)	1968, 2308, 2656, 2818
TaiI	ACGT	7 cut(s)	105, 315, 576, 1117, 1186, 2158, 2846
TaqI	TCGA	3 cut(s)	168, 443, 2690
TatI	WGTACW	4 cut(s)	463, 1025, 2295, 2793
TauI	GCSGC	3 cut(s)	85, 111, 114
TfiI	GAWTC	8 cut(s)	287, 523, 1802, 1964, 1991, 2022, 2516, 2687
Tru1I	TTAA	9 cut(s)	432, 1398, 1425, 1535, 1608, 1734, 2175, 2594, 2937
Tru9I	TTAA	9 cut(s)	432, 1398, 1425, 1535, 1608, 1734, 2175, 2594, 2937
TscAI	CASTG	5 cut(s)	1287, 1878, 2268, 2283, 2931
TseFI	GTSAC	5 cut(s)	256, 1660, 2498, 2603, 3004
TseI	GCWGC	6 cut(s)	415, 989, 1307, 2486, 2674, 2831
Tsp45I	GTSAC	5 cut(s)	256, 1660, 2498, 2603, 3004
TspDTI	ATGAA	8 cut(s)	291, 352, 401, 1404, 2112, 2112, 2341, 2423
TspGWI	ACGGA	2 cut(s)	210, 834
TspRI	CASTG	5 cut(s)	1287, 1878, 2268, 2283, 2931
Tth111I	GACNNNGTC	1 cut(s)	197
VneI	GTGCAC	3 cut(s)	424, 615, 1762
VpaK11BI	GGWCC	5 cut(s)	1219, 1703, 1939, 2929, 3089
XagI	CCTNNNNNAGG	1 cut(s)	2215
XapI	RAATTY	1 cut(s)	1639
XbaI	TCTAGA	1 cut(s)	1402
XceI	RCATGY	3 cut(s)	1157, 1364, 2635
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1774, 2110
XmiI	GTMKAC	2 cut(s)	315, 515
XspI	CTAG	2 cut(s)	849, 1403
ZraI	GACGTC	1 cut(s)	103
ZrmI	AGTACT	1 cut(s)	2297
Zsp2I	ATGCAT	1 cut(s)	1486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.