Rroxscaffold_1G00072570

Ubiquitin associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003083
Physical Location & Seq
Reverse (-)
93574324 .. 93576413
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00072570.1

Sequence Viewer

Length: 288 bp
ATGACGAAGTGGATGGCATATTACCACTTCCTAGACAATGTACAGGACATGATCCGGGTGATGATAGCAAAGAGTATGGCCAAAGTGGAGAGAAGGTTTATTACAAAAGAGCTTGCTCAGATTGCTGATCTGGAAGCAAGGTTTACGAGTTCAACACTTGAGGTTGAAAGAGCTATTGTAGCCTGTGAGGGTGATATTCAGAAGGCTGCTCAAAGCTTAAGAGCATCAAAGCAAGACCCAACTAAATTCCGATTTCACCTAAGCCAGAAGAAACTGTCGACCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.0

Weight (kDa)

9.61

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 278
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 1 cut(s) 42
AflII CTTAAG 1 cut(s) 217
AgsI TTSAA 2 cut(s) 153, 167
AluBI AGCT 3 cut(s) 112, 173, 216
AluI AGCT 3 cut(s) 112, 173, 216
AlwI GGATC 1 cut(s) 46
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 245
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 3 cut(s) 70, 203, 248
BalI TGGCCA 1 cut(s) 80
BarI GAAGNNNNNNTAC 2 cut(s) 85, 117
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 7
BcnI CCSGG 1 cut(s) 56
BfaI CTAG 2 cut(s) 32, 286
BfrI CTTAAG 1 cut(s) 217
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
BseGI GGATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 1 cut(s) 80
BsiSI CCGG 1 cut(s) 55
BsnI GGCC 1 cut(s) 80
Bsp1407I TGTACA 1 cut(s) 40
Bsp143I GATC 2 cut(s) 51, 127
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 130
BspPI GGATC 1 cut(s) 46
BspTI CTTAAG 1 cut(s) 217
BsrGI TGTACA 1 cut(s) 40
BssMI GATC 2 cut(s) 51, 127
Bst4CI ACNGT 1 cut(s) 276
BstAFI CTTAAG 1 cut(s) 217
BstAUI TGTACA 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 117, 260
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 2 cut(s) 54, 130
BstMBI GATC 2 cut(s) 51, 127
BstMWI GCNNNNNNNGC 2 cut(s) 122, 179
BstSCI CCNGG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 41
CviAII CATG 1 cut(s) 49
CviJI RGCY 7 cut(s) 80, 112, 173, 182, 206, 216, 264
CviKI_1 RGCY 7 cut(s) 80, 112, 173, 182, 206, 216, 264
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 2 cut(s) 117, 260
DpnI GATC 2 cut(s) 53, 129
DpnII GATC 2 cut(s) 51, 127
EaeI YGGCCR 1 cut(s) 78
FaeI CATG 1 cut(s) 52
FaiI YATR 3 cut(s) 19, 50, 77
FatI CATG 1 cut(s) 48
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 2 cut(s) 32, 286
GluI GCNGC 1 cut(s) 207
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 55
Hin1II CATG 1 cut(s) 52
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 214
HpaII CCGG 1 cut(s) 55
HphI GGTGA 3 cut(s) 70, 203, 248
Hpy166II GTNNAC 2 cut(s) 144, 279
Hpy188I TCNGA 3 cut(s) 120, 201, 251
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 2 cut(s) 144, 279
HpyAV CCTTC 2 cut(s) 87, 196
HpyCH4III ACNGT 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 179
HpyF3I CTNAG 2 cut(s) 117, 260
Hsp92II CATG 1 cut(s) 52
Kzo9I GATC 2 cut(s) 51, 127
LpnPI CCDG 5 cut(s) 29, 68, 116, 196, 278
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 233
MaeI CTAG 2 cut(s) 32, 286
MalI GATC 2 cut(s) 53, 129
MboI GATC 2 cut(s) 51, 127
MboII GAAGA 1 cut(s) 280
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 1 cut(s) 245
MluNI TGGCCA 1 cut(s) 80
MnlI CCTC 2 cut(s) 154, 181
Mox20I TGGCCA 1 cut(s) 80
MscI TGGCCA 1 cut(s) 80
MseI TTAA 1 cut(s) 218
Msp20I TGGCCA 1 cut(s) 80
MspCI CTTAAG 1 cut(s) 217
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 122, 179
NciI CCSGG 1 cut(s) 56
NdeII GATC 2 cut(s) 51, 127
NlaIII CATG 1 cut(s) 52
PkrI GCNGC 1 cut(s) 208
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SalI GTCGAC 1 cut(s) 277
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 2 cut(s) 51, 127
ScrFI CCNGG 1 cut(s) 56
SetI ASST 7 cut(s) 98, 114, 143, 165, 175, 218, 261
SfaNI GCATC 1 cut(s) 233
SmlI CTYRAG 2 cut(s) 158, 217
SmoI CTYRAG 2 cut(s) 158, 217
Sse9I AATT 1 cut(s) 245
SspMI CTAG 2 cut(s) 32, 286
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 278
TasI AATT 1 cut(s) 245
TatI WGTACW 1 cut(s) 40
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TseI GCWGC 1 cut(s) 206
Vha464I CTTAAG 1 cut(s) 217
XapI RAATTY 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 278
XspI CTAG 2 cut(s) 32, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.