Rh5DG028700

Ubiquitin associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003083
Physical Location & Seq
Reverse (-)
2075943 .. 2077681
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG028700.1

Sequence Viewer

Length: 531 bp
ATGTCTCCAACGTCTTCGAATGGTAGCTGGTCTGGTGAGTCGGGAGAACATAAACACAAAACATCTAGTCCTCCTGTTAAGCCCAAAACAGTACCGGGAACTGACAATGACAATAGCCAGCAAGCGCAAGAGTTGAATGAACGATGTAGTGGTTTTCTTATGTCGAGAAAATTGGGGGGGGGGGGACTTGCTCAACAGCTGACGGCGATTGGTTTTACGCTACATATGGCAACAGAGGCTCTCATTTGCAATGAAGGCAGTATAGAGAAATCAGTATTATGGCTTATTGATGGTGGTGTAGATTATTCAGGTGAAATTAGTTTGAAACTTGACATAACAGAAGAGCTTGCTCAGATTGCTGATCTGGAAGCAAGGTTTAAGTGCTCAACACAGGAGGTTGAAAGAGCTATTGTAGCCTGTGAGGGTGATATTCAGAAGGCTACTGAAAGCTTAAGAGCATCAAAGCAAGACCCAGCTTCGATTTCACCTAAGCCAGAAGAAACTGATGGCCCTCTAGTTAGTTTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

18.76

Weight (kDa)

4.75

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 93
AflII CTTAAG 1 cut(s) 451
AgsI TTSAA 3 cut(s) 136, 325, 401
AluBI AGCT 6 cut(s) 27, 199, 346, 407, 450, 476
AluI AGCT 6 cut(s) 27, 199, 346, 407, 450, 476
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 508
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 509
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 4 cut(s) 47, 323, 437, 477
AsuII TTCGAA 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 386
BccI CCATC 2 cut(s) 284, 500
BceAI ACGGC 1 cut(s) 219
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 66, 515
BfrI CTTAAG 1 cut(s) 451
Bme1390I CCNGG 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 509
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 467
BpiI GAAGAC 1 cut(s) 6
Bpu10I CCTNAGC 1 cut(s) 489
Bpu14I TTCGAA 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 365
BseYI CCCAGC 1 cut(s) 472
BshFI GGCC 1 cut(s) 510
BsiHKAI GWGCWC 1 cut(s) 386
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 1 cut(s) 510
Bsp119I TTCGAA 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 1 cut(s) 361
BspANI GGCC 1 cut(s) 510
BspCNI CTCAG 1 cut(s) 364
BspQI GCTCTTC 1 cut(s) 336
BspT104I TTCGAA 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 451
BsrDI GCAATG 1 cut(s) 256
BssMI GATC 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 336
BstAFI CTTAAG 1 cut(s) 451
BstBI TTCGAA 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 119, 123, 348
BstDEI CTNAG 2 cut(s) 351, 489
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 4 cut(s) 236, 255, 356, 413
BstSCI CCNGG 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 510
Cac8I GCNNGC 3 cut(s) 119, 123, 348
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 509
Csp6I GTAC 1 cut(s) 92
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 2 cut(s) 351, 489
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
FaiI YATR 7 cut(s) 51, 161, 225, 227, 263, 280, 335
FaqI GGGAC 1 cut(s) 198
FauNDI CATATG 1 cut(s) 225
FspBI CTAG 2 cut(s) 66, 515
GlaI GCGC 1 cut(s) 126
GsaI CCCAGC 1 cut(s) 476
HaeIII GGCC 1 cut(s) 510
HapII CCGG 1 cut(s) 95
HhaI GCGC 1 cut(s) 127
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 448
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 95
HphI GGTGA 4 cut(s) 47, 323, 437, 477
Hpy188I TCNGA 2 cut(s) 354, 435
Hpy188III TCNNGA 3 cut(s) 42, 165, 365
HpyAV CCTTC 2 cut(s) 248, 430
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 255, 356, 413
HpyF3I CTNAG 2 cut(s) 351, 489
HpySE526I ACGT 1 cut(s) 11
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 1 cut(s) 361
LguI GCTCTTC 1 cut(s) 336
LweI GCATC 1 cut(s) 467
MaeI CTAG 2 cut(s) 66, 515
MaeII ACGT 1 cut(s) 11
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 3 cut(s) 6, 353, 509
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 2 cut(s) 170, 315
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 5 cut(s) 81, 229, 388, 415, 522
MseI TTAA 3 cut(s) 78, 378, 452
MspA1I CMGCKG 1 cut(s) 199
MspCI CTTAAG 1 cut(s) 451
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 236, 255, 356, 413
NciI CCSGG 1 cut(s) 96
NdeI CATATG 1 cut(s) 225
NdeII GATC 1 cut(s) 361
NspV TTCGAA 1 cut(s) 17
PciSI GCTCTTC 1 cut(s) 336
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 472
PspPI GGNCC 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 3 cut(s) 78, 378, 452
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 1 cut(s) 509
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 1 cut(s) 386
SfaNI GCATC 1 cut(s) 467
SfuI TTCGAA 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
Sse9I AATT 2 cut(s) 170, 315
SspMI CTAG 2 cut(s) 66, 515
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 14
TaqI TCGA 3 cut(s) 17, 164, 479
TasI AATT 2 cut(s) 170, 315
Tru1I TTAA 3 cut(s) 78, 378, 452
Tru9I TTAA 3 cut(s) 78, 378, 452
TspDTI ATGAA 2 cut(s) 153, 267
Vha464I CTTAAG 1 cut(s) 451
XspI CTAG 2 cut(s) 66, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.