Ubiquitin associated domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G60740 |
| fragaria_vesca | FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 |
| malus_domestica | MD03G1123900.v1.1 MD11G1140900.v1.1 |
| prunus_persica | Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 |
| pyrus_communis | pycom11g11690 |
| rosa_chinensis | RchiOBHm_Chr5g0058181 |
| rosa_laevigata | RLG00000035201 |
| rosa_multiflora | Rmu_co8117600.1_g000001 Rmu_sc0000367.1_g000039 |
| rosa_roxburghii | Rroxscaffold_1G00022350 Rroxscaffold_1G00072570 |
| rosa_rugosa | Rorug04G0431300 Rorug05G0312500 Rorug05G0312600 |
| rosa_samantha | Rh5AG033200 Rh5AG380400 Rh5BG391600 Rh5CG035900 Rh5CG415600 Rh5DG028700 |
| rosa_wichuraiana | Rw5G035820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 164 |
| AfaI | GTAC | 1 cut(s) | 93 |
| AluBI | AGCT | 1 cut(s) | 27 |
| AluI | AGCT | 1 cut(s) | 27 |
| Alw26I | GTCTC | 3 cut(s) | 9, 18, 80 |
| AsuC2I | CCSGG | 1 cut(s) | 96 |
| AsuHPI | GGTGA | 1 cut(s) | 47 |
| BaeGI | GKGCMC | 1 cut(s) | 181 |
| BceAI | ACGGC | 1 cut(s) | 213 |
| BcnI | CCSGG | 1 cut(s) | 96 |
| BcoDI | GTCTC | 3 cut(s) | 9, 18, 80 |
| BfaI | CTAG | 2 cut(s) | 66, 215 |
| Bme1390I | CCNGG | 1 cut(s) | 96 |
| BmrFI | CCNGG | 1 cut(s) | 96 |
| BpuEI | CTTGAG | 1 cut(s) | 111 |
| BpuMI | CCSGG | 1 cut(s) | 96 |
| Bse1I | ACTGG | 1 cut(s) | 225 |
| Bse3DI | GCAATG | 1 cut(s) | 250 |
| BseMI | GCAATG | 1 cut(s) | 250 |
| BseNI | ACTGG | 1 cut(s) | 225 |
| BseSI | GKGCMC | 1 cut(s) | 181 |
| BsiSI | CCGG | 1 cut(s) | 95 |
| BsmAI | GTCTC | 3 cut(s) | 9, 18, 80 |
| BsmBI | CGTCTC | 1 cut(s) | 18 |
| Bsp1286I | GDGCHC | 1 cut(s) | 181 |
| BsrDI | GCAATG | 1 cut(s) | 250 |
| BsrI | ACTGG | 1 cut(s) | 225 |
| Bst4CI | ACNGT | 1 cut(s) | 91 |
| BstC8I | GCNNGC | 1 cut(s) | 119 |
| BstMAI | GTCTC | 3 cut(s) | 9, 18, 80 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 230, 249 |
| BstSCI | CCNGG | 1 cut(s) | 94 |
| BstSLI | GKGCMC | 1 cut(s) | 181 |
| BtgZI | GCGATG | 1 cut(s) | 157 |
| BtsI | GCAGTG | 1 cut(s) | 259 |
| BtsIMutI | CAGTG | 1 cut(s) | 259 |
| Cac8I | GCNNGC | 1 cut(s) | 119 |
| Csp6I | GTAC | 1 cut(s) | 92 |
| CviAII | CATG | 2 cut(s) | 137, 273 |
| CviJI | RGCY | 4 cut(s) | 27, 82, 117, 233 |
| CviKI_1 | RGCY | 4 cut(s) | 27, 82, 117, 233 |
| CviQI | GTAC | 1 cut(s) | 92 |
| Esp3I | CGTCTC | 1 cut(s) | 18 |
| FaeI | CATG | 2 cut(s) | 140, 276 |
| FaiI | YATR | 3 cut(s) | 138, 161, 274 |
| FatI | CATG | 2 cut(s) | 136, 272 |
| FblI | GTMKAC | 1 cut(s) | 164 |
| FspBI | CTAG | 2 cut(s) | 66, 215 |
| HapII | CCGG | 1 cut(s) | 95 |
| Hin1II | CATG | 2 cut(s) | 140, 276 |
| HincII | GTYRAC | 1 cut(s) | 165 |
| HindII | GTYRAC | 1 cut(s) | 165 |
| HinfI | GANTC | 1 cut(s) | 38 |
| HpaII | CCGG | 1 cut(s) | 95 |
| HphI | GGTGA | 1 cut(s) | 47 |
| Hpy166II | GTNNAC | 1 cut(s) | 165 |
| Hpy188I | TCNGA | 2 cut(s) | 18, 43 |
| Hpy188III | TCNNGA | 1 cut(s) | 128 |
| Hpy8I | GTNNAC | 1 cut(s) | 165 |
| HpyAV | CCTTC | 1 cut(s) | 242 |
| HpyCH4III | ACNGT | 1 cut(s) | 91 |
| HpyCH4V | TGCA | 2 cut(s) | 136, 243 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 230, 249 |
| Hsp92II | CATG | 2 cut(s) | 140, 276 |
| LpnPI | CCDG | 7 cut(s) | 13, 18, 21, 96, 108, 131, 206 |
| MaeI | CTAG | 2 cut(s) | 66, 215 |
| MboII | GAAGA | 1 cut(s) | 56 |
| MhlI | GDGCHC | 1 cut(s) | 181 |
| MluCI | AATT | 1 cut(s) | 170 |
| MlyI | GAGTC | 1 cut(s) | 47 |
| MmeI | TCCRAC | 1 cut(s) | 21 |
| MnlI | CCTC | 3 cut(s) | 81, 168, 223 |
| MseI | TTAA | 1 cut(s) | 78 |
| MspI | CCGG | 1 cut(s) | 95 |
| MspR9I | CCNGG | 1 cut(s) | 96 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 230, 249 |
| NciI | CCSGG | 1 cut(s) | 96 |
| NlaIII | CATG | 2 cut(s) | 140, 276 |
| PleI | GAGTC | 1 cut(s) | 46 |
| PpsI | GAGTC | 1 cut(s) | 46 |
| RsaI | GTAC | 1 cut(s) | 93 |
| RsaNI | GTAC | 1 cut(s) | 92 |
| SalI | GTCGAC | 1 cut(s) | 163 |
| SaqAI | TTAA | 1 cut(s) | 78 |
| SchI | GAGTC | 1 cut(s) | 47 |
| ScrFI | CCNGG | 1 cut(s) | 96 |
| SduI | GDGCHC | 1 cut(s) | 181 |
| SetI | ASST | 1 cut(s) | 29 |
| SmlI | CTYRAG | 1 cut(s) | 126 |
| SmoI | CTYRAG | 1 cut(s) | 126 |
| Sse9I | AATT | 1 cut(s) | 170 |
| SspMI | CTAG | 2 cut(s) | 66, 215 |
| StyD4I | CCNGG | 1 cut(s) | 94 |
| TaaI | ACNGT | 1 cut(s) | 91 |
| TaqI | TCGA | 1 cut(s) | 164 |
| TasI | AATT | 1 cut(s) | 170 |
| Tru1I | TTAA | 1 cut(s) | 78 |
| Tru9I | TTAA | 1 cut(s) | 78 |
| TscAI | CASTG | 1 cut(s) | 259 |
| TspDTI | ATGAA | 1 cut(s) | 261 |
| TspRI | CASTG | 1 cut(s) | 259 |
| XmiI | GTMKAC | 1 cut(s) | 164 |
| XspI | CTAG | 2 cut(s) | 66, 215 |