Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003083

Physical Location & Seq

Genomic Coordinates Reverse (-)

27585894 .. 27597351

Gene Structure 11458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3270 bp

ATGTTCAGCCGAGAGCACCTCTTTCTCTCTCTTAGGGTTCTTCTCCATGTGCTCGCTCTCAGCCTTGTTTGGCCCCCGGCGCCGCGTGTTTTCAGCCAGGACGTCGGCGGCGGCGATGGCGGCGGAGGTGGTGGAGGCGATGGCGATGTCGATGTCGGTGGTGGTGGTGGAGGAGGAGACGGAGTCTCTGCCGGGTATAAGGGCTTCACCACCGAACTCATCTTGAGTCGTTTCTCCAATGTCACCCCCATTCTCAAAGATGAACTCAAGGATTCGTTCAGCTACTGCGAACAAAGGTTTGAATTAGAGGTTGTAGCAGTTCAAACCCCCCAATCTGAACATTCTCATTCTCTATCTTTTTGTGGAGGTTTGGGAAAGATCACACAGCGGTTGTGCACTTTTAAAGAATTATCGATGTATGGTGAAAGTTTAGTACAAGTCAAGAAAAGCAGTAAATTGAAACCGAATAAGAACTGTAACCTGTCTACATGGAATCCTGGATGTGAACCTGGGTGGGCTTGTGGAACTGCTGAGGAAGTTGATGTGAAAAATAAAACATATGTCCCTGCCAGAACTGAAGACTGTGCACCTTGTTGTGAGGGTTTTTTCTGCCCTCATGGTCTTACTTGCATGATCCCTTGCCCAAAAGGTGCTTACTGCCCACTTGGAAAGCTCAATAGCACTACTGATACCGTTATCACCTACCTCCAGGGGAAGTCAAACCACACGTGTGGAGGAGCAGATAGGTGGGCTGATGTCTTGAGTAGTAAAGAGACATTATTGCAGGCTGGGCTCCACATCTCAGGAAGTTTTCAAGTGCTATTGCAAATGTTAACAAAAGTTTCCCATGTGACAAAAGATGGTTTTGTAGGATGTTTTAAAATGGCAAGTTGTAAGGCGAAATCAGAAAATCAAAATATTACTGCATATGGTATCATGCTTTTTGCTGCAATAATAGTTATACTTATTATTATATATAACTGTACTGATCAAGTGCTTGCCACCCGAGAGAAAAGACAAGCAAAATCCAGGGAAAAGGCTGTTCAAAGTGTAAGAGAAACAGCACAAGCACGTGAAAAATGGAAATCTGCAAAAGACATTGCTAAGAAGCATGCTGTTGGATTCTCAACACAGTTTTCACGTACATTTTCTCGCAGAAAATCCACCAGGCATTCGGACCAGCTGAAAGGAACAGGACAAGCTAAACCTGGAACAGATGGTGCCTTGCCACCTATGCCACTGACTGCGATAGGTGCATCTGAAGCAGCAACATCTAAAGGAAAGAAAAAGGAAAAAAGCAACCTCACACAAATGTTACATGCTATTGAGAATGACCCAGATAGTAATGAAGGCTTTAATCTAGAGATAGGTGATAAAAATATTAAAAAGCACGCACCAAAAGGTAAGCAGTTGCATACCCAAAGCCAGATTTTCAAGTATGCATATGGTCAAATTGAGAAGGAAAAGGCTTTACAGGAGCAGACAGCAAACTTAACCTTCTCTGGGGTTATACAAATGGCTGGTGGAATTGAAATCCAAAAGAGGCCTCCAATTGAGGTTGCTTTTAAAGATCTAACCCTCACATTGAAAGGGAAAAATATACATCTTATGAGATGTGTGACTGGGAAAATATCACCAGGCCGGGTTTCAGCTGTCATGGGTCCATCTGGAGCAGGAAAAACAACTTTTCTTAATGCTTTGTTAGGAAAAGTGAGAGGGTGCACCATGAGTGGTATGGTTCTTGTAAATGGAAAGATGGAATCTATCAACTCATATAAGAAAATCATAGGCTTTGTTCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAAGAAAATCTCTGGTTCAGCGCAAGATGCAGTGCGGGATTCCCTGGTTGGAACGGTAGAGAAGCGAGGAATCTCTGGAGGTCAAAGAAAAGAGTAAATGTTGGGCTGGAAATGGTCATGGAACCATCACTTCTAATTTTAGATGAACCCACATCTGGTTTGGATAGTTCATCTTCTAATCTGCTACTTAGAGCTCTTAGACGTGAGGCTCTTGAAGGAGTTAACATTTGCATGGTTGTCCACCAGCCCAGCTACACCTTGTTCAGGATGTTTGATGATTTGATACTTCTCGCTAAAGGTGGGCTTACAGTGTATCATGGATCAGTGAAGAAAGTTGAAGAGTACTTCAAGAGCCTTGGGATTATTGTTCCTGATCGTGTCAATCCTCCAGACTATTTCATTGACATTTTGGAAGGCTTAGTAAAACCAAGCACAAGCTCAGCGGTGGACTATAAACAACTACCCGTTAGGTGGATGCTTCATAATGGGTACCCAGTTCCTATGGATATGCTTCAGACTTCTGAGGGAATGGCTGCATCAACAAGTGACAGTTCAGCTCATGATTCTGGATCGGAGGGTTTTTGGCAGGATGTCAAGTGTAATGTTGAGGTGAAAAAGGACAATATACAGCATAATCTCTTAAAGTCGAGTGACTTATCGGAGCGGATTACCCCTGGCATGTTCCTGCAATATAGATACTTCCTTGGCAGGGTTGGTAAGCAGCGATTACGAGAATCGAGGACGCAAGCAATAGATTTTCTTATTTTATTGCTTGCTGGATCATGCTTAGGAGTTCTTGCTAAAGTAAGCGAGGAGACCTTCGGTTATCATGGTTATATGTACACCGTCATAGCAGTTTCTCTCCTTGGCAAGATTGCAGCTTTGAGAACGTTTGGACTGGATAAGTTGCACTACTGGAGAGAGAGCTCTGCTGGCATGAGTAGCTTGGCTTACTTTCTTTCAAAAGATACAGTTGACCATTTTAATACGGTCATCAAGCCTCTCGTTTACCTCTCCATGTTCTATTTCTTCAACAATCCAAGATCATCTGTCACAGATAATTATGTCGTTTTGTTATGTTTGGTTTACTGCGTAACTGGTATAGCTTATGCCTTGTCCATATACCTGGCTCCCGGTCCAGCTCAACTGTGGTCCGTGCTTCTCCCAGTCGTTTTGACTCTAGTAGGAAACAATACTATTGAAAGCCATATTGTGGAAAAAATATCCAACTTCTGCTATACTAAGTGGGCTTTGGAATCTTTTCTCATAGCAAATGCTCAAAAGTACTCTGGGGTGTGGATAATAACGAGATGTGCTACACTTCAGAAGAGTCACTATGACCTCAAGAATTGGTACCCTAATTTAGCCATGCTCATTGCTCTGGGTGTATTAACAAGAGTCATTGCATACATTATTTTGGTCTTCAAAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

1089

Amino Acids

119.78

Weight (kDa)

9.05

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	540 - 663	5.2e-14	ABC transporter
ABC2_membrane_7	PF19055	692 - 1089	1.3e-210	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60740
fragaria_vesca	FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510
malus_domestica	MD03G1123900.v1.1 MD11G1140900.v1.1
prunus_persica	Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1
pyrus_communis	pycom11g11690
rosa_chinensis	RchiOBHm_Chr5g0058181
rosa_laevigata	RLG00000035201
rosa_multiflora	Rmu_co8117600.1_g000001 Rmu_sc0000367.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022350 Rroxscaffold_1G00072570
rosa_rugosa	Rorug04G0431300 Rorug05G0312500 Rorug05G0312600
rosa_samantha	Rh5AG033200 Rh5AG380400 Rh5BG391600 Rh5CG035900 Rh5CG415600 Rh5DG028700
rosa_wichuraiana	Rw5G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
Acc65I	GGTACC	2 cut(s)	2322, 3186
AccB1I	GGYRCC	4 cut(s)	79, 1220, 2322, 3186
AccB7I	CCANNNNNTGG	1 cut(s)	3046
AccBSI	CCGCTC	1 cut(s)	2497
AccI	GTMKAC	1 cut(s)	485
AccII	CGCG	1 cut(s)	85
AciI	CCGC	9 cut(s)	83, 108, 111, 120, 123, 388, 1868, 2276, 2497
AclI	AACGTT	1 cut(s)	2723
AclWI	GGATC	4 cut(s)	628, 2161, 2410, 2620
AcuI	CTGAAG	4 cut(s)	597, 1281, 2330, 3140
AcvI	CACGTG	2 cut(s)	729, 1073
AcyI	GRCGYC	2 cut(s)	80, 102
AfaI	GTAC	8 cut(s)	435, 985, 1144, 2177, 2324, 2675, 3119, 3188
AfiI	CCNNNNNNNGG	6 cut(s)	1503, 1988, 2097, 2304, 2542, 3046
AflIII	ACRYGT	2 cut(s)	726, 728
AjiI	CACGTC	1 cut(s)	2036
AleI	CACNNNNGTG	1 cut(s)	729
Alw21I	GWGCWC	7 cut(s)	18, 54, 398, 589, 1724, 2029, 2762
Alw26I	GTCTC	4 cut(s)	171, 190, 767, 2642
Alw44I	GTGCAC	3 cut(s)	394, 585, 1720
AlwI	GGATC	4 cut(s)	628, 2161, 2410, 2620
AlwNI	CAGNNNCTG	1 cut(s)	285
Ama87I	CYCGRG	1 cut(s)	1005
AoxI	GGCC	3 cut(s)	71, 1544, 1639
ApaLI	GTGCAC	3 cut(s)	394, 585, 1720
ApeKI	GCWGC	5 cut(s)	947, 1265, 2366, 2554, 2711
Asp700I	GAANNNNTTC	1 cut(s)	3093
Asp718I	GGTACC	2 cut(s)	2322, 3186
AspLEI	GCGC	2 cut(s)	82, 1856
AspS9I	GGNCC	5 cut(s)	72, 1177, 1661, 2969, 2985
AsuC2I	CCSGG	4 cut(s)	77, 193, 1643, 2967
AsuHPI	GGTGA	7 cut(s)	199, 235, 434, 691, 1382, 1626, 2455
AvaI	CYCGRG	1 cut(s)	1005
AvaII	GGWCC	4 cut(s)	1177, 1661, 2969, 2985
BaeGI	GKGCMC	3 cut(s)	398, 589, 1724
BanI	GGYRCC	4 cut(s)	79, 1220, 2322, 3186
BanII	GRGCYC	3 cut(s)	795, 2029, 2762
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
BbrPI	CACGTG	2 cut(s)	729, 1073
BbsI	GAAGAC	2 cut(s)	585, 3247
Bbv12I	GWGCWC	7 cut(s)	18, 54, 398, 589, 1724, 2029, 2762
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	5 cut(s)	934, 1277, 2353, 2566, 2723
BccI	CCATC	7 cut(s)	110, 134, 854, 1211, 1672, 1750, 1966
BclI	TGATCA	1 cut(s)	988
BcnI	CCSGG	4 cut(s)	77, 193, 1643, 2967
BcoDI	GTCTC	4 cut(s)	171, 190, 767, 2642
BfaI	CTAG	2 cut(s)	1361, 3014
BfoI	RGCGCY	1 cut(s)	83
BglII	AGATCT	1 cut(s)	1570
BisI	GCNGC	9 cut(s)	83, 109, 112, 121, 948, 1266, 2367, 2555, 2712
BlpI	GCTNAGC	1 cut(s)	2272
BlsI	GCNGC	9 cut(s)	84, 110, 113, 122, 949, 1267, 2368, 2556, 2713
BmcAI	AGTACT	2 cut(s)	2177, 3119
Bme18I	GGWCC	4 cut(s)	1177, 1661, 2969, 2985
BmeT110I	CYCGRG	1 cut(s)	1005
BmgBI	CACGTC	1 cut(s)	2036
BmgT120I	GGNCC	5 cut(s)	72, 1177, 1661, 2969, 2985
BmiI	GGNNCC	9 cut(s)	74, 81, 794, 1222, 1662, 1956, 2324, 2964, 3188
BmrI	ACTGGG	3 cut(s)	1632, 2321, 2993
BmsI	GCATC	4 cut(s)	1265, 1850, 2298, 2378
BmuI	ACTGGG	3 cut(s)	1632, 2321, 2993
BpiI	GAAGAC	2 cut(s)	585, 3247
BplI	GAGNNNNNCTC	1 cut(s)	35
BpmI	CTGGAG	5 cut(s)	692, 1689, 1930, 2205, 2770
Bpu10I	CCTNAGC	2 cut(s)	531, 2620
Bpu1102I	GCTNAGC	1 cut(s)	2272
BpuEI	CTTGAG	4 cut(s)	244, 251, 781, 3161
BpuMI	CCSGG	4 cut(s)	77, 193, 1643, 2967
Bsa29I	ATCGAT	1 cut(s)	413
BsaAI	YACGTR	3 cut(s)	729, 1073, 1142
BsaHI	GRCGYC	2 cut(s)	80, 102
BsaI	GGTCTC	1 cut(s)	2642
BsaJI	CCNNGG	9 cut(s)	75, 509, 709, 1029, 1876, 2188, 2506, 2536, 2698
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	6 cut(s)	1503, 1988, 2097, 2304, 2542, 3046
Bse1I	ACTGG	6 cut(s)	1627, 2327, 2736, 2753, 2935, 2999
Bse3DI	GCAATG	3 cut(s)	1098, 3207, 3234
BseCI	ATCGAT	1 cut(s)	413
BseDI	CCNNGG	9 cut(s)	75, 509, 709, 1029, 1876, 2188, 2506, 2536, 2698
BseGI	GGATG	5 cut(s)	506, 878, 2106, 2313, 2428
BseLI	CCNNNNNNNGG	6 cut(s)	1503, 1988, 2097, 2304, 2542, 3046
BseMI	GCAATG	3 cut(s)	1098, 3207, 3234
BseMII	CTCAG	5 cut(s)	73, 522, 816, 2286, 2346
BseNI	ACTGG	6 cut(s)	1627, 2327, 2736, 2753, 2935, 2999
BseRI	GAGGAG	4 cut(s)	186, 189, 750, 2660
BseSI	GKGCMC	3 cut(s)	398, 589, 1724
BseXI	GCAGC	5 cut(s)	934, 1277, 2353, 2566, 2723
BseYI	CCCAGC	2 cut(s)	788, 2081
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	73, 1546, 1641
BshNI	GGYRCC	4 cut(s)	79, 1220, 2322, 3186
BshVI	ATCGAT	1 cut(s)	413
BsiHKAI	GWGCWC	7 cut(s)	18, 54, 398, 589, 1724, 2029, 2762
BsiHKCI	CYCGRG	1 cut(s)	1005
BsiSI	CCGG	4 cut(s)	77, 192, 1642, 2967
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	6 cut(s)	1503, 1988, 2097, 2304, 2542, 3046
BsmAI	GTCTC	4 cut(s)	171, 190, 767, 2642
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	548
BsmI	GAATGC	1 cut(s)	1171
BsnI	GGCC	3 cut(s)	73, 1546, 1641
Bso31I	GGTCTC	1 cut(s)	2642
BsoBI	CYCGRG	1 cut(s)	1005
Bsp1286I	GDGCHC	8 cut(s)	18, 54, 398, 589, 795, 1724, 2029, 2762
Bsp1407I	TGTACA	1 cut(s)	2673
Bsp143I	GATC	9 cut(s)	378, 633, 988, 1570, 2153, 2206, 2402, 2612, 2876
Bsp1720I	GCTNAGC	1 cut(s)	2272
BspACI	CCGC	9 cut(s)	83, 108, 111, 120, 123, 388, 1868, 2276, 2497
BspANI	GGCC	3 cut(s)	73, 1546, 1641
BspCNI	CTCAG	5 cut(s)	72, 523, 815, 2285, 2347
BspDI	ATCGAT	1 cut(s)	413
BspFNI	CGCG	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	2392
BspLI	GGNNCC	9 cut(s)	74, 81, 794, 1222, 1662, 1956, 2324, 2964, 3188
BspPI	GGATC	4 cut(s)	628, 2161, 2410, 2620
BspT107I	GGYRCC	4 cut(s)	79, 1220, 2322, 3186
BspTNI	GGTCTC	1 cut(s)	2642
BsrBI	CCGCTC	1 cut(s)	2497
BsrDI	GCAATG	3 cut(s)	1098, 3207, 3234
BsrGI	TGTACA	1 cut(s)	2673
BsrI	ACTGG	6 cut(s)	1627, 2327, 2736, 2753, 2935, 2999
BssECI	CCNNGG	9 cut(s)	75, 509, 709, 1029, 1876, 2188, 2506, 2536, 2698
BssMI	GATC	9 cut(s)	378, 633, 988, 1570, 2153, 2206, 2402, 2612, 2876
BssNI	GRCGYC	2 cut(s)	80, 102
BssT1I	CCWWGG	3 cut(s)	2188, 2536, 2698
Bst6I	CTCTTC	2 cut(s)	2166, 3155
BstACI	GRCGYC	2 cut(s)	80, 102
BstAUI	TGTACA	1 cut(s)	2673
BstBAI	YACGTR	3 cut(s)	729, 1073, 1142
BstC8I	GCNNGC	8 cut(s)	54, 786, 999, 1113, 1392, 2580, 2607, 2767
BstENI	CCTNNNNNAGG	1 cut(s)	2095
BstF5I	GGATG	5 cut(s)	506, 878, 2106, 2313, 2428
BstFNI	CGCG	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	2 cut(s)	82, 1856
BstKTI	GATC	9 cut(s)	381, 636, 991, 1573, 2156, 2209, 2405, 2615, 2879
BstMAI	GTCTC	4 cut(s)	171, 190, 767, 2642
BstMBI	GATC	9 cut(s)	378, 633, 988, 1570, 2153, 2206, 2402, 2612, 2876
BstNSI	RCATGY	3 cut(s)	1115, 1322, 2515
BstSLI	GKGCMC	3 cut(s)	398, 589, 1724
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	5 cut(s)	934, 1277, 2353, 2566, 2723
BstV2I	GAAGAC	2 cut(s)	585, 3247
BstX2I	RGATCY	1 cut(s)	1570
BstXI	CCANNNNNNTGG	2 cut(s)	731, 2959
BstYI	RGATCY	1 cut(s)	1570
Bsu15I	ATCGAT	1 cut(s)	413
BsuRI	GGCC	3 cut(s)	73, 1546, 1641
BsuTUI	ATCGAT	1 cut(s)	413
BtgZI	GCGATG	3 cut(s)	129, 153, 159
BtrI	CACGTC	1 cut(s)	2036
BtsCI	GGATG	5 cut(s)	506, 878, 2106, 2313, 2428
BtsI	GCAGTG	1 cut(s)	1870
BtsIMutI	CAGTG	5 cut(s)	1238, 1836, 1870, 2148, 2163
Cac8I	GCNNGC	8 cut(s)	54, 786, 999, 1113, 1392, 2580, 2607, 2767
CaiI	CAGNNNCTG	1 cut(s)	285
CciI	TCATGA	1 cut(s)	2392
CfoI	GCGC	2 cut(s)	82, 1856
Cfr13I	GGNCC	5 cut(s)	72, 1177, 1661, 2969, 2985
ClaI	ATCGAT	1 cut(s)	413
CseI	GACGC	1 cut(s)	2584
Csp6I	GTAC	8 cut(s)	434, 984, 1143, 2176, 2323, 2674, 3118, 3187
CviQI	GTAC	8 cut(s)	434, 984, 1143, 2176, 2323, 2674, 3118, 3187
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	9 cut(s)	380, 635, 990, 1572, 2155, 2208, 2404, 2614, 2878
DpnII	GATC	9 cut(s)	378, 633, 988, 1570, 2153, 2206, 2402, 2612, 2876
DraI	TTTAAA	3 cut(s)	403, 880, 1567
Eam1104I	CTCTTC	2 cut(s)	2166, 3155
EarI	CTCTTC	2 cut(s)	2166, 3155
EciI	GGCGGA	1 cut(s)	138
Ecl136II	GAGCTC	2 cut(s)	2027, 2760
Eco130I	CCWWGG	3 cut(s)	2188, 2536, 2698
Eco147I	AGGCCT	1 cut(s)	1546
Eco24I	GRGCYC	3 cut(s)	795, 2029, 2762
Eco31I	GGTCTC	1 cut(s)	2642
Eco47I	GGWCC	4 cut(s)	1177, 1661, 2969, 2985
Eco53kI	GAGCTC	2 cut(s)	2027, 2760
Eco57I	CTGAAG	4 cut(s)	597, 1281, 2330, 3140
Eco72I	CACGTG	2 cut(s)	729, 1073
Eco88I	CYCGRG	1 cut(s)	1005
EcoICRI	GAGCTC	2 cut(s)	2027, 2760
EcoNI	CCTNNNNNAGG	1 cut(s)	2095
EcoT14I	CCWWGG	3 cut(s)	2188, 2536, 2698
EcoT22I	ATGCAT	1 cut(s)	1444
EcoT38I	GRGCYC	3 cut(s)	795, 2029, 2762
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
ErhI	CCWWGG	3 cut(s)	2188, 2536, 2698
Esp3I	CGTCTC	1 cut(s)	171
FalI	AAGNNNNNCTT	2 cut(s)	2121, 2153
FaqI	GGGAC	1 cut(s)	548
FauI	CCCGC	1 cut(s)	1861
FauNDI	CATATG	3 cut(s)	559, 928, 1444
FbaI	TGATCA	1 cut(s)	988
FblI	GTMKAC	1 cut(s)	485
Fnu4HI	GCNGC	9 cut(s)	83, 109, 112, 121, 948, 1266, 2367, 2555, 2712
FokI	GGATG	5 cut(s)	513, 885, 2113, 2320, 2435
FriOI	GRGCYC	3 cut(s)	795, 2029, 2762
Fsp4HI	GCNGC	9 cut(s)	83, 109, 112, 121, 948, 1266, 2367, 2555, 2712
FspBI	CTAG	2 cut(s)	1361, 3014
GlaI	GCGC	2 cut(s)	81, 1855
GluI	GCNGC	9 cut(s)	83, 109, 112, 121, 948, 1266, 2367, 2555, 2712
GsaI	CCCAGC	2 cut(s)	792, 2085
GsuI	CTGGAG	5 cut(s)	692, 1689, 1930, 2205, 2770
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	73, 1546, 1641
HapII	CCGG	4 cut(s)	77, 192, 1642, 2967
HgaI	GACGC	1 cut(s)	2584
HhaI	GCGC	2 cut(s)	82, 1856
Hin1I	GRCGYC	2 cut(s)	80, 102
Hin6I	GCGC	2 cut(s)	80, 1854
HinP1I	GCGC	2 cut(s)	80, 1854
HincII	GTYRAC	3 cut(s)	834, 2056, 2809
HindII	GTYRAC	3 cut(s)	834, 2056, 2809
HpaI	GTTAAC	2 cut(s)	834, 2056
HpaII	CCGG	4 cut(s)	77, 192, 1642, 2967
HphI	GGTGA	7 cut(s)	199, 235, 434, 691, 1382, 1626, 2455
Hpy188I	TCNGA	9 cut(s)	337, 907, 1177, 1261, 2349, 2356, 2407, 2494, 3159
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	6 cut(s)	1343, 1453, 1507, 2042, 2240, 2662
HpyCH4IV	ACGT	6 cut(s)	102, 728, 1072, 1141, 2035, 2723
HpySE526I	ACGT	6 cut(s)	102, 728, 1072, 1141, 2035, 2723
Hsp92I	GRCGYC	2 cut(s)	80, 102
HspAI	GCGC	2 cut(s)	80, 1854
KasI	GGCGCC	1 cut(s)	79
KpnI	GGTACC	2 cut(s)	2326, 3190
Ksp22I	TGATCA	1 cut(s)	988
KspAI	GTTAAC	2 cut(s)	834, 2056
Kzo9I	GATC	9 cut(s)	378, 633, 988, 1570, 2153, 2206, 2402, 2612, 2876
LmnI	GCTCC	6 cut(s)	737, 798, 1477, 1670, 2494, 2968
Lsp1109I	GCAGC	5 cut(s)	934, 1277, 2353, 2566, 2723
LweI	GCATC	4 cut(s)	1265, 1850, 2298, 2378
MaeI	CTAG	2 cut(s)	1361, 3014
MaeII	ACGT	6 cut(s)	102, 728, 1072, 1141, 2035, 2723
MalI	GATC	9 cut(s)	380, 635, 990, 1572, 2155, 2208, 2404, 2614, 2878
MbiI	CCGCTC	1 cut(s)	2497
MboI	GATC	9 cut(s)	378, 633, 988, 1570, 2153, 2206, 2402, 2612, 2876
MboII	GAAGA	9 cut(s)	32, 590, 1847, 1998, 2173, 2183, 2854, 3172, 3247
MfeI	CAATTG	1 cut(s)	1551
MflI	RGATCY	1 cut(s)	1570
MhlI	GDGCHC	8 cut(s)	18, 54, 398, 589, 795, 1724, 2029, 2762
Mly113I	GGCGCC	1 cut(s)	80
MlyI	GAGTC	5 cut(s)	192, 235, 3004, 3172, 3240
MmeI	TCCRAC	3 cut(s)	1099, 1862, 3084
Mph1103I	ATGCAT	1 cut(s)	1444
MroXI	GAANNNNTTC	1 cut(s)	3093
MslI	CAYNNNNRTG	3 cut(s)	729, 1310, 2063
MspA1I	CMGCKG	4 cut(s)	388, 1183, 1652, 2276
MspI	CCGG	4 cut(s)	77, 192, 1642, 2967
MunI	CAATTG	1 cut(s)	1551
Mva1269I	GAATGC	1 cut(s)	1171
MvnI	CGCG	1 cut(s)	85
NarI	GGCGCC	1 cut(s)	80
NciI	CCSGG	4 cut(s)	77, 193, 1643, 2967
NdeI	CATATG	3 cut(s)	559, 928, 1444
NdeII	GATC	9 cut(s)	378, 633, 988, 1570, 2153, 2206, 2402, 2612, 2876
NlaIV	GGNNCC	9 cut(s)	74, 81, 794, 1222, 1662, 1956, 2324, 2964, 3188
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	7 cut(s)	241, 850, 1618, 2378, 2483, 2884, 3164
NsiI	ATGCAT	1 cut(s)	1444
NspI	RCATGY	3 cut(s)	1115, 1322, 2515
OliI	CACNNNNGTG	1 cut(s)	729
PaeI	GCATGC	1 cut(s)	1115
PagI	TCATGA	1 cut(s)	2392
PceI	AGGCCT	1 cut(s)	1546
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	1171
PdmI	GAANNNNTTC	1 cut(s)	3093
PfeI	GAWTC	9 cut(s)	272, 493, 1122, 1760, 1872, 1903, 2396, 2567, 3089
PflFI	GACNNNGTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	3046
PfoI	TCCNGGA	1 cut(s)	496
PkrI	GCNGC	9 cut(s)	84, 110, 113, 122, 949, 1267, 2368, 2556, 2713
PleI	GAGTC	5 cut(s)	191, 234, 3004, 3171, 3239
PluTI	GGCGCC	1 cut(s)	83
PmaCI	CACGTG	2 cut(s)	729, 1073
PmlI	CACGTG	2 cut(s)	729, 1073
PpsI	GAGTC	5 cut(s)	191, 234, 3004, 3171, 3239
Ppu21I	YACGTR	3 cut(s)	729, 1073, 1142
Psp124BI	GAGCTC	2 cut(s)	2029, 2762
Psp1406I	AACGTT	1 cut(s)	2723
PspCI	CACGTG	2 cut(s)	729, 1073
PspFI	CCCAGC	2 cut(s)	788, 2081
PspN4I	GGNNCC	9 cut(s)	74, 81, 794, 1222, 1662, 1956, 2324, 2964, 3188
PspPI	GGNCC	5 cut(s)	72, 1177, 1661, 2969, 2985
PstNI	CAGNNNCTG	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	1570
PsyI	GACNNNGTC	1 cut(s)	182
PvuII	CAGCTG	2 cut(s)	1183, 1652
RsaI	GTAC	8 cut(s)	435, 985, 1144, 2177, 2324, 2675, 3119, 3188
RsaNI	GTAC	8 cut(s)	434, 984, 1143, 2176, 2323, 2674, 3118, 3187
RseI	CAYNNNNRTG	3 cut(s)	729, 1310, 2063
SacI	GAGCTC	2 cut(s)	2029, 2762
SatI	GCNGC	9 cut(s)	83, 109, 112, 121, 948, 1266, 2367, 2555, 2712
Sau3AI	GATC	9 cut(s)	378, 633, 988, 1570, 2153, 2206, 2402, 2612, 2876
Sau96I	GGNCC	5 cut(s)	72, 1177, 1661, 2969, 2985
ScaI	AGTACT	2 cut(s)	2177, 3119
SchI	GAGTC	5 cut(s)	192, 235, 3004, 3172, 3240
SduI	GDGCHC	8 cut(s)	18, 54, 398, 589, 795, 1724, 2029, 2762
SfaNI	GCATC	4 cut(s)	1265, 1850, 2298, 2378
SfoI	GGCGCC	1 cut(s)	81
SinI	GGWCC	4 cut(s)	1177, 1661, 2969, 2985
SmiMI	CAYNNNNRTG	3 cut(s)	729, 1310, 2063
SmlI	CTYRAG	4 cut(s)	223, 266, 760, 3176
SmoI	CTYRAG	4 cut(s)	223, 266, 760, 3176
SphI	GCATGC	1 cut(s)	1115
SseBI	AGGCCT	1 cut(s)	1546
SsiI	CCGC	9 cut(s)	83, 108, 111, 120, 123, 388, 1868, 2276, 2497
SspDI	GGCGCC	1 cut(s)	79
SspI	AATATT	2 cut(s)	919, 1381
SspMI	CTAG	2 cut(s)	1361, 3014
SstI	GAGCTC	2 cut(s)	2029, 2762
StuI	AGGCCT	1 cut(s)	1546
StyI	CCWWGG	3 cut(s)	2188, 2536, 2698
TaiI	ACGT	6 cut(s)	105, 731, 1075, 1144, 2038, 2726
TaqI	TCGA	4 cut(s)	150, 413, 2480, 2570
TatI	WGTACW	5 cut(s)	433, 983, 2175, 2673, 3117
TauI	GCSGC	4 cut(s)	85, 111, 114, 123
TfiI	GAWTC	9 cut(s)	272, 493, 1122, 1760, 1872, 1903, 2396, 2567, 3089
TscAI	CASTG	5 cut(s)	1245, 1836, 1870, 2148, 2163
TseFI	GTSAC	7 cut(s)	241, 850, 1618, 2378, 2483, 2884, 3164
TseI	GCWGC	5 cut(s)	947, 1265, 2366, 2554, 2711
Tsp45I	GTSAC	7 cut(s)	241, 850, 1618, 2378, 2483, 2884, 3164
TspDTI	ATGAA	6 cut(s)	276, 1362, 1992, 1992, 2221, 2303
TspGWI	ACGGA	2 cut(s)	195, 2977
TspRI	CASTG	5 cut(s)	1245, 1836, 1870, 2148, 2163
Tth111I	GACNNNGTC	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	3046
VneI	GTGCAC	3 cut(s)	394, 585, 1720
VpaK11BI	GGWCC	4 cut(s)	1177, 1661, 2969, 2985
XagI	CCTNNNNNAGG	1 cut(s)	2095
XbaI	TCTAGA	1 cut(s)	1360
XceI	RCATGY	3 cut(s)	1115, 1322, 2515
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1732, 1990, 2979
XmiI	GTMKAC	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	3093
XspI	CTAG	2 cut(s)	1361, 3014
ZraI	GACGTC	1 cut(s)	103
ZrmI	AGTACT	2 cut(s)	2177, 3119
Zsp2I	ATGCAT	1 cut(s)	1444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.