Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8117600.1

Orthogroup ID

OG0003083

Physical Location & Seq

Genomic Coordinates Forward (+)

225 .. 500

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8117600.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgtctccagcgtctccgaatggtagctggtcttgtgagtcggaagaacatcaacacaaaacatctagtcctcccgttaagccagagacagtaccgggaactgacaatgacaacagccagcaaactcaagagttgcatgaacgatgtcgtggttttcttatgtcgacaaaattgagggcacttgctcaacagatgacggcgattggttttacgctagaactggcaacagaggctctcatttgcaatgaaggcagtgttgagaaatcagtagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

9.89

Weight (kDa)

5.03

Isoelectric Point (pI)

65.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60740
fragaria_vesca	FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510
malus_domestica	MD03G1123900.v1.1 MD11G1140900.v1.1
prunus_persica	Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1
pyrus_communis	pycom11g11690
rosa_chinensis	RchiOBHm_Chr5g0058181
rosa_laevigata	RLG00000035201
rosa_multiflora	Rmu_co8117600.1_g000001 Rmu_sc0000367.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022350 Rroxscaffold_1G00072570
rosa_rugosa	Rorug04G0431300 Rorug05G0312500 Rorug05G0312600
rosa_samantha	Rh5AG033200 Rh5AG380400 Rh5BG391600 Rh5CG035900 Rh5CG415600 Rh5DG028700
rosa_wichuraiana	Rw5G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	164
AfaI	GTAC	1 cut(s)	93
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw26I	GTCTC	3 cut(s)	9, 18, 80
AsuC2I	CCSGG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	3 cut(s)	9, 18, 80
BfaI	CTAG	2 cut(s)	66, 215
Bme1390I	CCNGG	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	95
BsmAI	GTCTC	3 cut(s)	9, 18, 80
BsmBI	CGTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	119
BstMAI	GTCTC	3 cut(s)	9, 18, 80
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 249
BstSCI	CCNGG	1 cut(s)	94
BstSLI	GKGCMC	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	2 cut(s)	137, 273
CviJI	RGCY	4 cut(s)	27, 82, 117, 233
CviKI_1	RGCY	4 cut(s)	27, 82, 117, 233
CviQI	GTAC	1 cut(s)	92
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	2 cut(s)	140, 276
FaiI	YATR	3 cut(s)	138, 161, 274
FatI	CATG	2 cut(s)	136, 272
FblI	GTMKAC	1 cut(s)	164
FspBI	CTAG	2 cut(s)	66, 215
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	2 cut(s)	140, 276
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	2 cut(s)	18, 43
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	165
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	136, 243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 249
Hsp92II	CATG	2 cut(s)	140, 276
LpnPI	CCDG	6 cut(s)	13, 21, 96, 108, 131, 206
MaeI	CTAG	2 cut(s)	66, 215
MboII	GAAGA	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	1 cut(s)	170
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	3 cut(s)	81, 168, 223
MseI	TTAA	1 cut(s)	78
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	230, 249
NciI	CCSGG	1 cut(s)	96
NlaIII	CATG	2 cut(s)	140, 276
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SalI	GTCGAC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	78
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	1 cut(s)	170
SspMI	CTAG	2 cut(s)	66, 215
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	153, 261
TspRI	CASTG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	164
XspI	CTAG	2 cut(s)	66, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.