Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003083

Physical Location & Seq

Genomic Coordinates Reverse (-)

10459393 .. 10460557

Gene Structure 1165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGATTTTTGCAGGATTAATTTTCATCTTTCTCGTTATATATAATTTTTCTGACCAAGTTCTTGCCACCCGAGAAAAAAGACAAGCAAAATCCAGGGAAAGAGCAGTTGAAAGTGTAAGAGAAAATGCACAAGTGCGTGAAAAATGGAAATCTGCAAAAGACATTGCTAAGAAGCATGCAGTTGGACTGTCAACACAGTTTTCACGTACATTTTCTCACAGAAAATCCACCAAGTCAGACCCGCTGAGAGGATTTGGACAGGCTAAACCTGGATCAGATGCTGCCTTGCCATCTATGCCAACCGGGATAGGTGAGCAATCAGCTGGAACATCTAAAGGAAAGGAAAAGGAAAAAAGAAACCTCACACAAATGATAAAAGCAATCGAGGAAGACCCAAATAGTCATGAAGGCTTCAATCTAGAAATAGGAGATAAAAACATTAAAAAGCAAGCACCAAAAGCACCGAAAGGTAAGCAGTTGCATACTCAGAGTCAAATATTCAAGTATGCATATGGTCAAATTGAGAAGGAAAAGGCATTACAGGAGCAGAATGCGAACTTAACCTTCTCCGGGGTCATACAAATGGCTGGTGATCTTGAAATCAGGAAGAGACCTCCCATTGAGGTTGTTTTTAAAGATCTAACTCTCACGTTGAAAGGGAAAAACAAACATCTTTTGAGGTGTGTGAGTGGGAAAATATCGCCTGGCCGGGTTTCAGCTGTCATGGGTCCATCTGGGGCTGGAAAAACAACATTTCTTTCTGCCTTGGTTGGAAAATTGAGGGGGTGCACAGTGAGTGGTATGATACTTGTAAATGGAAAGATGGAAGCTATCCACTGTTACAAGAAAATCATTGGCTTTGTGCCACAAGATGATATTGTGCATGGAAATTTGACAGTTGAAGAGAATCTCTGGTTTAGCGCAAGATGCAGGTATGCAACCACTTTGTATAGTTGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

321

Amino Acids

35.47

Weight (kDa)

9.83

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60740
fragaria_vesca	FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510
malus_domestica	MD03G1123900.v1.1 MD11G1140900.v1.1
prunus_persica	Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1
pyrus_communis	pycom11g11690
rosa_chinensis	RchiOBHm_Chr5g0058181
rosa_laevigata	RLG00000035201
rosa_multiflora	Rmu_co8117600.1_g000001 Rmu_sc0000367.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022350 Rroxscaffold_1G00072570
rosa_rugosa	Rorug04G0431300 Rorug05G0312500 Rorug05G0312600
rosa_samantha	Rh5AG033200 Rh5AG380400 Rh5BG391600 Rh5CG035900 Rh5CG415600 Rh5DG028700
rosa_wichuraiana	Rw5G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	921
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	1 cut(s)	706
AcsI	RAATTY	1 cut(s)	889
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	248, 570
AgsI	TTSAA	6 cut(s)	110, 415, 502, 599, 655, 902
AjnI	CCWGG	3 cut(s)	92, 268, 703
AluBI	AGCT	3 cut(s)	323, 719, 830
AluI	AGCT	3 cut(s)	323, 719, 830
Alw21I	GWGCWC	1 cut(s)	791
Alw26I	GTCTC	1 cut(s)	604
Alw44I	GTGCAC	1 cut(s)	787
AlwI	GGATC	1 cut(s)	280
AlwNI	CAGNNNCTG	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	69
AoxI	GGCC	1 cut(s)	706
ApaLI	GTGCAC	1 cut(s)	787
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	889
AseI	ATTAAT	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	923
AspS9I	GGNCC	1 cut(s)	728
AsuC2I	CCSGG	3 cut(s)	304, 571, 710
AsuHPI	GGTGA	2 cut(s)	323, 602
AvaI	CYCGRG	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	728
BaeGI	GKGCMC	1 cut(s)	791
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	791
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	298, 739, 817
BciT130I	CCWGG	3 cut(s)	94, 270, 705
BcnI	CCSGG	3 cut(s)	304, 571, 710
BcoDI	GTCTC	1 cut(s)	604
BfaI	CTAG	1 cut(s)	419
BfuAI	ACCTGC	1 cut(s)	921
BglII	AGATCT	1 cut(s)	637
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	6 cut(s)	94, 270, 304, 571, 705, 710
Bme18I	GGWCC	1 cut(s)	728
BmeT110I	CYCGRG	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	1 cut(s)	729
BmrFI	CCNGG	6 cut(s)	94, 270, 304, 571, 705, 710
BmsI	GCATC	2 cut(s)	268, 917
BpiI	GAAGAC	1 cut(s)	396
BpuMI	CCSGG	3 cut(s)	304, 571, 710
BsaAI	YACGTR	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	604
BsaJI	CCNNGG	3 cut(s)	93, 570, 765
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 570
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	3 cut(s)	94, 270, 705
BseDI	CCNNGG	3 cut(s)	93, 570, 765
BseLI	CCNNNNNNNGG	2 cut(s)	248, 570
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	236, 500
BseSI	GKGCMC	1 cut(s)	791
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	708
BsiHKAI	GWGCWC	1 cut(s)	791
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	3 cut(s)	303, 570, 709
BslI	CCNNNNNNNGG	2 cut(s)	248, 570
BsmAI	GTCTC	1 cut(s)	604
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	1 cut(s)	708
Bso31I	GGTCTC	1 cut(s)	604
BsoBI	CYCGRG	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	791
Bsp143I	GATC	3 cut(s)	272, 592, 637
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	708
BspCNI	CTCAG	2 cut(s)	237, 499
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	729
BspMI	ACCTGC	1 cut(s)	921
BspPI	GGATC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	604
BsrDI	GCAATG	1 cut(s)	162
BssECI	CCNNGG	3 cut(s)	93, 570, 765
BssMI	GATC	3 cut(s)	272, 592, 637
BssT1I	CCWWGG	1 cut(s)	765
Bst2UI	CCWGG	3 cut(s)	94, 270, 705
Bst4CI	ACNGT	5 cut(s)	189, 198, 793, 839, 898
Bst6I	CTCTTC	2 cut(s)	602, 897
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	177, 450
BstDEI	CTNAG	3 cut(s)	168, 245, 486
BstHHI	GCGC	1 cut(s)	923
BstKTI	GATC	3 cut(s)	275, 595, 640
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	3 cut(s)	272, 592, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	295, 458, 927
BstNI	CCWGG	3 cut(s)	94, 270, 705
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	6 cut(s)	92, 268, 302, 569, 703, 708
BstSLI	GKGCMC	1 cut(s)	791
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	1 cut(s)	708
BtsIMutI	CAGTG	2 cut(s)	798, 835
BveI	ACCTGC	1 cut(s)	921
Cac8I	GCNNGC	2 cut(s)	177, 450
CaiI	CAGNNNCTG	1 cut(s)	281
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	1 cut(s)	923
Cfr13I	GGNCC	1 cut(s)	728
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	4 cut(s)	176, 404, 724, 884
CviJI	RGCY	9 cut(s)	263, 323, 411, 587, 708, 719, 740, 830, 858
CviKI_1	RGCY	9 cut(s)	263, 323, 411, 587, 708, 719, 740, 830, 858
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	3 cut(s)	168, 245, 486
DpnI	GATC	3 cut(s)	274, 594, 639
DpnII	GATC	3 cut(s)	272, 592, 637
DraI	TTTAAA	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	706
Eam1104I	CTCTTC	2 cut(s)	602, 897
EarI	CTCTTC	2 cut(s)	602, 897
Eco130I	CCWWGG	1 cut(s)	765
Eco31I	GGTCTC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	728
Eco88I	CYCGRG	1 cut(s)	69
EcoRII	CCWGG	3 cut(s)	92, 268, 703
EcoT14I	CCWWGG	1 cut(s)	765
EcoT22I	ATGCAT	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	765
FaeI	CATG	4 cut(s)	179, 407, 727, 887
FatI	CATG	4 cut(s)	175, 403, 723, 883
FauI	CCCGC	1 cut(s)	249
FauNDI	CATATG	1 cut(s)	511
Fnu4HI	GCNGC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	419
GlaI	GCGC	1 cut(s)	922
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	708
HapII	CCGG	3 cut(s)	303, 570, 709
HhaI	GCGC	1 cut(s)	923
Hin1II	CATG	4 cut(s)	179, 407, 727, 887
Hin6I	GCGC	1 cut(s)	921
HinP1I	GCGC	1 cut(s)	921
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	2 cut(s)	490, 907
HpaII	CCGG	3 cut(s)	303, 570, 709
HphI	GGTGA	2 cut(s)	323, 602
Hpy166II	GTNNAC	2 cut(s)	192, 789
Hpy188I	TCNGA	4 cut(s)	52, 238, 277, 489
Hpy188III	TCNNGA	4 cut(s)	404, 419, 596, 604
Hpy8I	GTNNAC	2 cut(s)	192, 789
HpyAV	CCTTC	3 cut(s)	401, 520, 574
HpyCH4III	ACNGT	5 cut(s)	189, 198, 793, 839, 898
HpyCH4IV	ACGT	2 cut(s)	205, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	295, 458, 927
HpyF3I	CTNAG	3 cut(s)	168, 245, 486
HpySE526I	ACGT	2 cut(s)	205, 650
Hsp92II	CATG	4 cut(s)	179, 407, 727, 887
HspAI	GCGC	1 cut(s)	921
Kzo9I	GATC	3 cut(s)	272, 592, 637
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	2 cut(s)	268, 917
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	2 cut(s)	205, 650
MaeIII	GTNAC	1 cut(s)	839
MalI	GATC	3 cut(s)	274, 594, 639
MboI	GATC	3 cut(s)	272, 592, 637
MboII	GAAGA	3 cut(s)	401, 619, 914
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	1 cut(s)	791
MluCI	AATT	5 cut(s)	18, 43, 519, 776, 889
MlyI	GAGTC	1 cut(s)	499
MmeI	TCCRAC	2 cut(s)	163, 751
MnlI	CCTC	7 cut(s)	242, 371, 379, 616, 624, 672, 774
Mph1103I	ATGCAT	1 cut(s)	511
MseI	TTAA	4 cut(s)	17, 441, 560, 633
MslI	CAYNNNNRTG	2 cut(s)	368, 581
MspA1I	CMGCKG	3 cut(s)	244, 323, 719
MspI	CCGG	3 cut(s)	303, 570, 709
MspR9I	CCNGG	6 cut(s)	94, 270, 304, 571, 705, 710
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	3 cut(s)	94, 270, 705
MwoI	GCNNNNNNNGC	3 cut(s)	295, 458, 927
NciI	CCSGG	3 cut(s)	304, 571, 710
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	3 cut(s)	272, 592, 637
NlaIII	CATG	4 cut(s)	179, 407, 727, 887
NlaIV	GGNNCC	1 cut(s)	729
NsiI	ATGCAT	1 cut(s)	511
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PagI	TCATGA	1 cut(s)	403
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	907
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
Ppu21I	YACGTR	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	17
Psp6I	CCWGG	3 cut(s)	92, 268, 703
PspGI	CCWGG	3 cut(s)	92, 268, 703
PspN4I	GGNNCC	1 cut(s)	729
PspPI	GGNCC	1 cut(s)	728
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	2 cut(s)	323, 719
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
RseI	CAYNNNNRTG	2 cut(s)	368, 581
SaqAI	TTAA	4 cut(s)	17, 441, 560, 633
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	3 cut(s)	272, 592, 637
Sau96I	GGNCC	1 cut(s)	728
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	6 cut(s)	94, 270, 304, 571, 705, 710
SduI	GDGCHC	1 cut(s)	791
SfaNI	GCATC	2 cut(s)	268, 917
SinI	GGWCC	1 cut(s)	728
SmiMI	CAYNNNNRTG	2 cut(s)	368, 581
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	5 cut(s)	18, 43, 519, 776, 889
SsiI	CCGC	1 cut(s)	242
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	6 cut(s)	92, 268, 302, 569, 703, 708
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	5 cut(s)	189, 198, 793, 839, 898
TaiI	ACGT	2 cut(s)	208, 653
TaqI	TCGA	1 cut(s)	384
TasI	AATT	5 cut(s)	18, 43, 519, 776, 889
TfiI	GAWTC	1 cut(s)	907
Tru1I	TTAA	4 cut(s)	17, 441, 560, 633
Tru9I	TTAA	4 cut(s)	17, 441, 560, 633
TscAI	CASTG	2 cut(s)	798, 842
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	13, 420
TspRI	CASTG	2 cut(s)	798, 842
VneI	GTGCAC	1 cut(s)	787
VpaK11BI	GGWCC	1 cut(s)	728
VspI	ATTAAT	1 cut(s)	17
XapI	RAATTY	1 cut(s)	889
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	1 cut(s)	419
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.