Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003083

Physical Location & Seq

Genomic Coordinates Forward (+)

62621798 .. 62633541

Gene Structure 11744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG391600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3396 bp

ATGTTCAGCAGAGAGCACCTCTTTCTCTCTCTTAGGGTTCTTCTCCATGTGCTCGCTCTCAGCCTTGTTTGGCCTCCGGCGCCGCGTGTTTTCAGCCAGGACGTCGGCGGCGGCGATGGCGGTGGCGGTGGAGGAGGCGATGGCGATGGCGGAGGCGGAGGTGATGTCGATGTCGGTGGTGGTGGTGGTGGAGGAGGAGACGGAGTCTCTGCCGGGTACAAGGGCTTCACCACCGAACTCATCTTGAGTCGTTTCTCCAATGTCACCCCCATTCTCAAAGATGAACTCAAGGATTCGTTCAGCTACTGCGTCATTGACGTAGACGAGGATTGGAATGGGGCTTTCAATTTCTCAGACGATGCAACATTCATTACCAACTGCGCCAAAAAAATGAAAGGTGGAGGTTTGGGAATGATTACGCAGCGGTTGTGCACTTTTAAAGAATTATCGATGTATGGTGAAAGTTTAGTACAAGTCAAGAAAAGCAGTAAATTGAAACCGAATAAGAACTGTAACCTGTCTACATGGAATCCTGGATGTGAACCTGGGTGGGCTTGTGGAACTACTGAGGAAGTTGACGTGAAAAATAAAACATATGTGCCTGCCAGAACTGAAGACTGTGCACCTTGTTGTGAGGGTTTTTTCTGCCCTCATGGTCTTACTTGCATGATCCCTTGCCCAAAAGGTGCTTACTGCCCACTTGGAAAGCTCAATAGCACTACTGGTATATGCGTGCCATACCGTTATCACCTACCTCCAGGGAAGTCAAACCACACTTGTGGAGGAGCAGATAGGTGGGCTGATGTCTTGAGTAGTAAAGAGGTATTCTGTTCAGGTGGATCATACTGTCCGTCTAGCATCCAAAAAAATCCTTGCAGTAGTGGACATTATTGCAGGCTGGGCTCCACATCTCAGGAAGGATGTTTCAAAATGGCAAGTTGTAATGCGAAATCAGAAAATCAAAATATTACTGCATATGGTATCATGCTTTTTGCTGCAATAATAGTTATACTTATTATTATATATAACTGTACTGATCAAGTGCTTGCCACCCGAGAGAAAAGACAAGCAAAATCCAGGGAAAAGGCTGTTCAAAGTGTAAGAGAAACAGCACAAGCACGTGAAAAATGGAAATCTGCAAAAGACATTGCTAAGAAGCATGCTGTTGGACTCTCAACACAGTTTTCACGTACATTTTCTCGCAGAAAATCCACCAGGCATTCGGACCAGCTGAAAGGAACAGGACAAGCTAAACCTGGAACAGATGGTGCGTTGCCACCTATGCCACTGACTGCGATAGGTGCATCTGAAGCAGCAACATCTAAAGGAAAGAAAAAGGAAAAAAGCAACCTCACACAAATGTTACATGCTATTGAGGATGACCCAGATAGTAATGAAGGCTTTAATCTAGAGATAGGTGATAAAAATATTAAAAAGCACGCACCAAAAGGTAAGCAGTTGCATACCCAAAGCCAGATTTTCAAGTATGCATATGGTCAAATTGAGAAGGAAAAGGCTTTACAGGAGCAGACAGCAAACTTAACCTTCTCTGGGGTTATACAAATGGCTGGTGGAATTGAAATCCAAAAGAGGCCTCCAATTGAGGTTGCTTTTAAAGATCTAACCCTCACATTGAAAGGGAAAAATTTACATCTTATGAGATGTGTGACTGGGAAAATATCACCAGGCCGGGTTTCAGCTGTCATGGGTCCATCTGGAGCAGGAAAAACAACTTTTCTTAATGCTTTGTTAGGAAAAGTGAGAGGGTGCACCATGAGTGGTATGGTTCTTGTAAATGGAAAGATGGAATCTATCAACTCATATAAGAAAATCATAGGCTTTGTTCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAAGAAAATCTCTGGTTCAGCGCAAGATGCAGACTCTCTTCCAATCTGCCTCAACCAGAAAAGGTCCTGGTTGTTGAAAGAGTTATTGAATCCTTGGGCTTGCAGGCGGTGCGGGATTCCCTGGTTGGAACGGTAGAGATGCGAGGAATCTCTGGAGGTCAAAGAAAAAGAGTAAATGTTGGGCTGGAAATGGTCATGGAACCATCACTTCTAATTTTAGATGAACCCACATCTGGTTTGGATAGTTCATCTTCTAATCTGCTACTTAGAGCTCTTAGACGTGAGGCTCTTGAAGGAGTTAACATTTGCATGGTTGTCCACCAGCCCAGCTACACCTTGTTCAGGATGTTTGATGATTTGATACTTCTCGCTAAAGGTGGGCTTACAGTGTATCATGGATCAGTGAAGAAAGTTGAAGAGTACTTCAAGAGCCTTGGGATTATTGTTCCTGATCGTGTCAATCCTCCAGACTATTTCATTGACATTTTGGAAGGCTTAGTAAAACCAAGCACAAGCTCAGGGGTGGACTATAAACAACTACCCGTTAGGTGGATGCTTCATAATGGGTACCCAGTTCCTATGGATATGCTTCAGACTTCTGAGGGAATGGCTGCATCAACAAGTGACAGTTCAGCCCATGATTCTGGATCGGAGGGTTTTTGGCAGGATGTCAAGTGTAATGTTGAGGTGAAAAAGGACAATATACAGCATAATCTCTTAAAGTCAAGTGACTTATCGGAGCGGATTACCCCTGGCATGTTCCTGCAATATAGATACTTCCTTGGCAGGGTTGGTAAGCAGCGATTACGAGAATCGAGGACACAAGCAATAGATTTTCTTATTTTATTGCTTGCTGGATCATGCTTAGGAGTTCTTGCTAAAGTAAGCGAGGAGACCTTCGGTTATCATGGTTATATGTACACCGTCATAGCAGTTTCTCTCCTTGGCAAGATTGCAGCTTTGAGAACGTTTGGACTGGATAAATTGCACTACTGGAGAGAGAGCTCTGCTGGCATGAGTAGCTTGGCTTACTTTCTTTCAAAAGATACAGTGGACCATTTTAATACGGTCATCAAGCCTCTTGTTTACCTCTCCATGTTCTATTTCTTCAACAATCCAAGATCATCTGTCACAGATAATTATGTCGTTTTGTTATGTTTGGTTTACTGCGTAACTGGTATAGCTTATGCCTTGTCCATATACCTGGCTCCCGGTCCAGCTCAACTGTGGTCCGTGCTTCTCCCAGTCGTTTTGACTCTAGTAGGAAACAATACTATTGAAAGCCATATTGTGGAAAAAATATCTAACTTCTGCTATACTAAGTGGGCTTTGGAATCTTTTCTCGTAGCAAATGCTCAAAAGTACTCTGGGGTGTGGATAATAACAAGATGTGCTACACTTCAGAAGAGTCACTATGACCTCAAGAATTGGTACCCTAATTTAGCCATGCTCATTACTCTGGGTGTATTAACAAGAGTCATTGCATACATTATTTTGGTCTTCAAAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

1131

Amino Acids

123.74

Weight (kDa)

8.87

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	556 - 705	1.1e-23	ABC transporter
ABC2_membrane_7	PF19055	734 - 1131	1.2e-210	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60740
fragaria_vesca	FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510
malus_domestica	MD03G1123900.v1.1 MD11G1140900.v1.1
prunus_persica	Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1
pyrus_communis	pycom11g11690
rosa_chinensis	RchiOBHm_Chr5g0058181
rosa_laevigata	RLG00000035201
rosa_multiflora	Rmu_co8117600.1_g000001 Rmu_sc0000367.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022350 Rroxscaffold_1G00072570
rosa_rugosa	Rorug04G0431300 Rorug05G0312500 Rorug05G0312600
rosa_samantha	Rh5AG033200 Rh5AG380400 Rh5BG391600 Rh5CG035900 Rh5CG415600 Rh5DG028700
rosa_wichuraiana	Rw5G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
Acc65I	GGTACC	2 cut(s)	2448, 3312
AccB1I	GGYRCC	3 cut(s)	79, 2448, 3312
AccB7I	CCANNNNNTGG	1 cut(s)	3172
AccBSI	CCGCTC	1 cut(s)	2623
AccI	GTMKAC	2 cut(s)	321, 521
AccII	CGCG	1 cut(s)	85
AclI	AACGTT	1 cut(s)	2849
AclWI	GGATC	5 cut(s)	664, 847, 2287, 2536, 2746
AcsI	RAATTY	1 cut(s)	1645
AcuI	CTGAAG	4 cut(s)	633, 1329, 2456, 3266
AcvI	CACGTG	1 cut(s)	1121
AcyI	GRCGYC	2 cut(s)	80, 102
AfaI	GTAC	9 cut(s)	218, 471, 1033, 1192, 2303, 2450, 2801, 3245, 3314
AfiI	CCNNNNNNNGG	6 cut(s)	1551, 2114, 2223, 2430, 2668, 3172
AjiI	CACGTC	2 cut(s)	580, 2162
AleI	CACNNNNGTG	1 cut(s)	777
Alw21I	GWGCWC	7 cut(s)	18, 54, 434, 625, 1772, 2155, 2888
Alw26I	GTCTC	3 cut(s)	192, 211, 2768
Alw44I	GTGCAC	3 cut(s)	430, 621, 1768
AlwI	GGATC	5 cut(s)	664, 847, 2287, 2536, 2746
AlwNI	CAGNNNCTG	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	1053
AoxI	GGCC	3 cut(s)	71, 1592, 1687
ApaLI	GTGCAC	3 cut(s)	430, 621, 1768
ApeKI	GCWGC	6 cut(s)	421, 995, 1313, 2492, 2680, 2837
ApoI	RAATTY	1 cut(s)	1645
Asp700I	GAANNNNTTC	1 cut(s)	3219
Asp718I	GGTACC	2 cut(s)	2448, 3312
AspLEI	GCGC	3 cut(s)	82, 383, 1904
AspS9I	GGNCC	6 cut(s)	1225, 1709, 1945, 2935, 3095, 3111
AsuC2I	CCSGG	3 cut(s)	214, 1691, 3093
AsuHPI	GGTGA	8 cut(s)	173, 220, 256, 470, 740, 1430, 1674, 2581
AvaI	CYCGRG	1 cut(s)	1053
AvaII	GGWCC	6 cut(s)	1225, 1709, 1945, 2935, 3095, 3111
BaeGI	GKGCMC	3 cut(s)	434, 625, 1772
BanI	GGYRCC	3 cut(s)	79, 2448, 3312
BanII	GRGCYC	3 cut(s)	905, 2155, 2888
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
BbrPI	CACGTG	1 cut(s)	1121
BbsI	GAAGAC	2 cut(s)	621, 3373
Bbv12I	GWGCWC	7 cut(s)	18, 54, 434, 625, 1772, 2155, 2888
BbvI	GCAGC	6 cut(s)	433, 982, 1325, 2479, 2692, 2849
BccI	CCATC	7 cut(s)	110, 134, 140, 1259, 1720, 1798, 2092
BclI	TGATCA	1 cut(s)	1036
BcnI	CCSGG	3 cut(s)	214, 1691, 3093
BcoDI	GTCTC	3 cut(s)	192, 211, 2768
BfaI	CTAG	3 cut(s)	855, 1409, 3140
BfoI	RGCGCY	1 cut(s)	83
BglII	AGATCT	1 cut(s)	1618
BisI	GCNGC	9 cut(s)	83, 109, 112, 422, 996, 1314, 2493, 2681, 2838
BlsI	GCNGC	9 cut(s)	84, 110, 113, 423, 997, 1315, 2494, 2682, 2839
BmcAI	AGTACT	2 cut(s)	2303, 3245
Bme18I	GGWCC	6 cut(s)	1225, 1709, 1945, 2935, 3095, 3111
BmeT110I	CYCGRG	1 cut(s)	1053
BmgBI	CACGTC	2 cut(s)	580, 2162
BmgT120I	GGNCC	6 cut(s)	1225, 1709, 1945, 2935, 3095, 3111
BmiI	GGNNCC	7 cut(s)	81, 904, 1710, 2082, 2450, 3090, 3314
BmrI	ACTGGG	3 cut(s)	1680, 2447, 3119
BmsI	GCATC	7 cut(s)	349, 867, 1313, 1898, 2010, 2424, 2504
BmuI	ACTGGG	3 cut(s)	1680, 2447, 3119
BpiI	GAAGAC	2 cut(s)	621, 3373
BplI	GAGNNNNNCTC	1 cut(s)	35
BpmI	CTGGAG	5 cut(s)	741, 1737, 2055, 2331, 2896
Bpu10I	CCTNAGC	2 cut(s)	2398, 2746
BpuEI	CTTGAG	4 cut(s)	265, 272, 829, 3287
BpuMI	CCSGG	3 cut(s)	214, 1691, 3093
Bsa29I	ATCGAT	1 cut(s)	449
BsaAI	YACGTR	2 cut(s)	1121, 1190
BsaHI	GRCGYC	2 cut(s)	80, 102
BsaI	GGTCTC	1 cut(s)	2768
BsaJI	CCNNGG	9 cut(s)	545, 758, 1077, 1974, 2001, 2314, 2632, 2662, 2824
BsaXI	ACNNNNNCTCC	4 cut(s)	150, 180, 189, 219
Bsc4I	CCNNNNNNNGG	6 cut(s)	1551, 2114, 2223, 2430, 2668, 3172
Bse1I	ACTGG	7 cut(s)	727, 1675, 2453, 2862, 2879, 3061, 3125
Bse3DI	GCAATG	2 cut(s)	1146, 3360
BseCI	ATCGAT	1 cut(s)	449
BseDI	CCNNGG	9 cut(s)	545, 758, 1077, 1974, 2001, 2314, 2632, 2662, 2824
BseGI	GGATG	7 cut(s)	542, 858, 926, 1384, 2232, 2439, 2554
BseLI	CCNNNNNNNGG	6 cut(s)	1551, 2114, 2223, 2430, 2668, 3172
BseMI	GCAATG	2 cut(s)	1146, 3360
BseMII	CTCAG	6 cut(s)	73, 366, 558, 926, 2412, 2472
BseNI	ACTGG	7 cut(s)	727, 1675, 2453, 2862, 2879, 3061, 3125
BseRI	GAGGAG	5 cut(s)	147, 207, 210, 798, 2786
BseSI	GKGCMC	3 cut(s)	434, 625, 1772
BseXI	GCAGC	6 cut(s)	433, 982, 1325, 2479, 2692, 2849
BseYI	CCCAGC	2 cut(s)	898, 2207
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	73, 1594, 1689
BshNI	GGYRCC	3 cut(s)	79, 2448, 3312
BshVI	ATCGAT	1 cut(s)	449
BsiHKAI	GWGCWC	7 cut(s)	18, 54, 434, 625, 1772, 2155, 2888
BsiHKCI	CYCGRG	1 cut(s)	1053
BsiSI	CCGG	4 cut(s)	77, 213, 1690, 3093
BslI	CCNNNNNNNGG	6 cut(s)	1551, 2114, 2223, 2430, 2668, 3172
BsmAI	GTCTC	3 cut(s)	192, 211, 2768
BsmBI	CGTCTC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	1219
BsnI	GGCC	3 cut(s)	73, 1594, 1689
Bso31I	GGTCTC	1 cut(s)	2768
BsoBI	CYCGRG	1 cut(s)	1053
Bsp1286I	GDGCHC	8 cut(s)	18, 54, 434, 625, 905, 1772, 2155, 2888
Bsp1407I	TGTACA	1 cut(s)	2799
Bsp143I	GATC	9 cut(s)	669, 839, 1036, 1618, 2279, 2332, 2528, 2738, 3002
BspANI	GGCC	3 cut(s)	73, 1594, 1689
BspCNI	CTCAG	6 cut(s)	72, 365, 559, 925, 2411, 2473
BspDI	ATCGAT	1 cut(s)	449
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	7 cut(s)	81, 904, 1710, 2082, 2450, 3090, 3314
BspPI	GGATC	5 cut(s)	664, 847, 2287, 2536, 2746
BspT107I	GGYRCC	3 cut(s)	79, 2448, 3312
BspTNI	GGTCTC	1 cut(s)	2768
BsrBI	CCGCTC	1 cut(s)	2623
BsrDI	GCAATG	2 cut(s)	1146, 3360
BsrGI	TGTACA	1 cut(s)	2799
BsrI	ACTGG	7 cut(s)	727, 1675, 2453, 2862, 2879, 3061, 3125
BssECI	CCNNGG	9 cut(s)	545, 758, 1077, 1974, 2001, 2314, 2632, 2662, 2824
BssMI	GATC	9 cut(s)	669, 839, 1036, 1618, 2279, 2332, 2528, 2738, 3002
BssNI	GRCGYC	2 cut(s)	80, 102
BssT1I	CCWWGG	4 cut(s)	1974, 2314, 2662, 2824
Bst6I	CTCTTC	3 cut(s)	1924, 2292, 3281
BstACI	GRCGYC	2 cut(s)	80, 102
BstAPI	GCANNNNNTGC	1 cut(s)	1990
BstAUI	TGTACA	1 cut(s)	2799
BstBAI	YACGTR	2 cut(s)	1121, 1190
BstENI	CCTNNNNNAGG	1 cut(s)	2221
BstF5I	GGATG	7 cut(s)	542, 858, 926, 1384, 2232, 2439, 2554
BstFNI	CGCG	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	3 cut(s)	82, 383, 1904
BstKTI	GATC	9 cut(s)	672, 842, 1039, 1621, 2282, 2335, 2531, 2741, 3005
BstMAI	GTCTC	3 cut(s)	192, 211, 2768
BstMBI	GATC	9 cut(s)	669, 839, 1036, 1618, 2279, 2332, 2528, 2738, 3002
BstNSI	RCATGY	3 cut(s)	1163, 1370, 2641
BstSLI	GKGCMC	3 cut(s)	434, 625, 1772
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	6 cut(s)	433, 982, 1325, 2479, 2692, 2849
BstV2I	GAAGAC	2 cut(s)	621, 3373
BstX2I	RGATCY	1 cut(s)	1618
BstXI	CCANNNNNNTGG	3 cut(s)	779, 2525, 3085
BstYI	RGATCY	1 cut(s)	1618
Bsu15I	ATCGAT	1 cut(s)	449
BsuRI	GGCC	3 cut(s)	73, 1594, 1689
BsuTUI	ATCGAT	1 cut(s)	449
BtgZI	GCGATG	3 cut(s)	129, 153, 159
BtrI	CACGTC	2 cut(s)	580, 2162
BtsCI	GGATG	7 cut(s)	542, 858, 926, 1384, 2232, 2439, 2554
BtsIMutI	CAGTG	5 cut(s)	1286, 1884, 2274, 2289, 2937
CaiI	CAGNNNCTG	1 cut(s)	306
CfoI	GCGC	3 cut(s)	82, 383, 1904
Cfr13I	GGNCC	6 cut(s)	1225, 1709, 1945, 2935, 3095, 3111
ClaI	ATCGAT	1 cut(s)	449
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	9 cut(s)	217, 470, 1032, 1191, 2302, 2449, 2800, 3244, 3313
CviQI	GTAC	9 cut(s)	217, 470, 1032, 1191, 2302, 2449, 2800, 3244, 3313
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	9 cut(s)	671, 841, 1038, 1620, 2281, 2334, 2530, 2740, 3004
DpnII	GATC	9 cut(s)	669, 839, 1036, 1618, 2279, 2332, 2528, 2738, 3002
DraI	TTTAAA	2 cut(s)	439, 1615
Eam1104I	CTCTTC	3 cut(s)	1924, 2292, 3281
EarI	CTCTTC	3 cut(s)	1924, 2292, 3281
EciI	GGCGGA	2 cut(s)	165, 171
Ecl136II	GAGCTC	2 cut(s)	2153, 2886
Eco130I	CCWWGG	4 cut(s)	1974, 2314, 2662, 2824
Eco147I	AGGCCT	1 cut(s)	1594
Eco24I	GRGCYC	3 cut(s)	905, 2155, 2888
Eco31I	GGTCTC	1 cut(s)	2768
Eco47I	GGWCC	6 cut(s)	1225, 1709, 1945, 2935, 3095, 3111
Eco53kI	GAGCTC	2 cut(s)	2153, 2886
Eco57I	CTGAAG	4 cut(s)	633, 1329, 2456, 3266
Eco72I	CACGTG	1 cut(s)	1121
Eco88I	CYCGRG	1 cut(s)	1053
EcoICRI	GAGCTC	2 cut(s)	2153, 2886
EcoNI	CCTNNNNNAGG	1 cut(s)	2221
EcoO109I	RGGNCCY	1 cut(s)	1945
EcoT14I	CCWWGG	4 cut(s)	1974, 2314, 2662, 2824
EcoT22I	ATGCAT	1 cut(s)	1492
EcoT38I	GRGCYC	3 cut(s)	905, 2155, 2888
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
ErhI	CCWWGG	4 cut(s)	1974, 2314, 2662, 2824
Esp3I	CGTCTC	1 cut(s)	192
FalI	AAGNNNNNCTT	2 cut(s)	2247, 2279
FauI	CCCGC	1 cut(s)	1986
FauNDI	CATATG	3 cut(s)	595, 976, 1492
FbaI	TGATCA	1 cut(s)	1036
FblI	GTMKAC	2 cut(s)	321, 521
Fnu4HI	GCNGC	9 cut(s)	83, 109, 112, 422, 996, 1314, 2493, 2681, 2838
FokI	GGATG	7 cut(s)	549, 845, 933, 1391, 2239, 2446, 2561
FriOI	GRGCYC	3 cut(s)	905, 2155, 2888
Fsp4HI	GCNGC	9 cut(s)	83, 109, 112, 422, 996, 1314, 2493, 2681, 2838
FspBI	CTAG	3 cut(s)	855, 1409, 3140
GlaI	GCGC	3 cut(s)	81, 382, 1903
GluI	GCNGC	9 cut(s)	83, 109, 112, 422, 996, 1314, 2493, 2681, 2838
GsaI	CCCAGC	2 cut(s)	902, 2211
GsuI	CTGGAG	5 cut(s)	741, 1737, 2055, 2331, 2896
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	73, 1594, 1689
HapII	CCGG	4 cut(s)	77, 213, 1690, 3093
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	3 cut(s)	82, 383, 1904
Hin1I	GRCGYC	2 cut(s)	80, 102
Hin6I	GCGC	3 cut(s)	80, 381, 1902
HinP1I	GCGC	3 cut(s)	80, 381, 1902
HincII	GTYRAC	2 cut(s)	577, 2182
HindII	GTYRAC	2 cut(s)	577, 2182
HpaI	GTTAAC	1 cut(s)	2182
HpaII	CCGG	4 cut(s)	77, 213, 1690, 3093
HphI	GGTGA	8 cut(s)	173, 220, 256, 470, 740, 1430, 1674, 2581
Hpy188I	TCNGA	9 cut(s)	355, 955, 1225, 1309, 2475, 2482, 2533, 2620, 3285
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	7 cut(s)	911, 1391, 1501, 1555, 2168, 2366, 2788
HpyCH4IV	ACGT	7 cut(s)	102, 318, 579, 1120, 1189, 2161, 2849
HpySE526I	ACGT	7 cut(s)	102, 318, 579, 1120, 1189, 2161, 2849
Hsp92I	GRCGYC	2 cut(s)	80, 102
HspAI	GCGC	3 cut(s)	80, 381, 1902
KasI	GGCGCC	1 cut(s)	79
KpnI	GGTACC	2 cut(s)	2452, 3316
Ksp22I	TGATCA	1 cut(s)	1036
KspAI	GTTAAC	1 cut(s)	2182
Kzo9I	GATC	9 cut(s)	669, 839, 1036, 1618, 2279, 2332, 2528, 2738, 3002
LmnI	GCTCC	6 cut(s)	785, 908, 1525, 1718, 2620, 3094
Lsp1109I	GCAGC	6 cut(s)	433, 982, 1325, 2479, 2692, 2849
LweI	GCATC	7 cut(s)	349, 867, 1313, 1898, 2010, 2424, 2504
MaeI	CTAG	3 cut(s)	855, 1409, 3140
MaeII	ACGT	7 cut(s)	102, 318, 579, 1120, 1189, 2161, 2849
MaeIII	GTNAC	9 cut(s)	262, 512, 1362, 1666, 2504, 2609, 3010, 3052, 3290
MalI	GATC	9 cut(s)	671, 841, 1038, 1620, 2281, 2334, 2530, 2740, 3004
MbiI	CCGCTC	1 cut(s)	2623
MboI	GATC	9 cut(s)	669, 839, 1036, 1618, 2279, 2332, 2528, 2738, 3002
MfeI	CAATTG	1 cut(s)	1599
MflI	RGATCY	1 cut(s)	1618
MhlI	GDGCHC	8 cut(s)	18, 54, 434, 625, 905, 1772, 2155, 2888
Mly113I	GGCGCC	1 cut(s)	80
MlyI	GAGTC	7 cut(s)	213, 256, 1164, 1908, 3130, 3298, 3366
MmeI	TCCRAC	2 cut(s)	1147, 1987
Mph1103I	ATGCAT	1 cut(s)	1492
MroXI	GAANNNNTTC	1 cut(s)	3219
MslI	CAYNNNNRTG	3 cut(s)	777, 1358, 2189
MspA1I	CMGCKG	3 cut(s)	424, 1231, 1700
MspI	CCGG	4 cut(s)	77, 213, 1690, 3093
MunI	CAATTG	1 cut(s)	1599
Mva1269I	GAATGC	1 cut(s)	1219
MvnI	CGCG	1 cut(s)	85
NarI	GGCGCC	1 cut(s)	80
NciI	CCSGG	3 cut(s)	214, 1691, 3093
NdeI	CATATG	3 cut(s)	595, 976, 1492
NdeII	GATC	9 cut(s)	669, 839, 1036, 1618, 2279, 2332, 2528, 2738, 3002
NlaIV	GGNNCC	7 cut(s)	81, 904, 1710, 2082, 2450, 3090, 3314
NmuCI	GTSAC	6 cut(s)	262, 1666, 2504, 2609, 3010, 3290
NsiI	ATGCAT	1 cut(s)	1492
NspI	RCATGY	3 cut(s)	1163, 1370, 2641
OliI	CACNNNNGTG	1 cut(s)	777
PaeI	GCATGC	1 cut(s)	1163
PceI	AGGCCT	1 cut(s)	1594
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	1219
PdmI	GAANNNNTTC	1 cut(s)	3219
PfeI	GAWTC	9 cut(s)	293, 529, 1808, 1970, 1997, 2028, 2522, 2693, 3215
PflFI	GACNNNGTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	3172
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	9 cut(s)	84, 110, 113, 423, 997, 1315, 2494, 2682, 2839
PleI	GAGTC	7 cut(s)	212, 255, 1164, 1908, 3130, 3297, 3365
PluTI	GGCGCC	1 cut(s)	83
PmaCI	CACGTG	1 cut(s)	1121
PmlI	CACGTG	1 cut(s)	1121
PpsI	GAGTC	7 cut(s)	212, 255, 1164, 1908, 3130, 3297, 3365
Ppu21I	YACGTR	2 cut(s)	1121, 1190
PpuMI	RGGWCCY	1 cut(s)	1945
Psp124BI	GAGCTC	2 cut(s)	2155, 2888
Psp1406I	AACGTT	1 cut(s)	2849
Psp5II	RGGWCCY	1 cut(s)	1945
PspCI	CACGTG	1 cut(s)	1121
PspFI	CCCAGC	2 cut(s)	898, 2207
PspN4I	GGNNCC	7 cut(s)	81, 904, 1710, 2082, 2450, 3090, 3314
PspPI	GGNCC	6 cut(s)	1225, 1709, 1945, 2935, 3095, 3111
PspPPI	RGGWCCY	1 cut(s)	1945
PstNI	CAGNNNCTG	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	1618
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	2 cut(s)	1231, 1700
RsaI	GTAC	9 cut(s)	218, 471, 1033, 1192, 2303, 2450, 2801, 3245, 3314
RsaNI	GTAC	9 cut(s)	217, 470, 1032, 1191, 2302, 2449, 2800, 3244, 3313
RseI	CAYNNNNRTG	3 cut(s)	777, 1358, 2189
SacI	GAGCTC	2 cut(s)	2155, 2888
SatI	GCNGC	9 cut(s)	83, 109, 112, 422, 996, 1314, 2493, 2681, 2838
Sau3AI	GATC	9 cut(s)	669, 839, 1036, 1618, 2279, 2332, 2528, 2738, 3002
Sau96I	GGNCC	6 cut(s)	1225, 1709, 1945, 2935, 3095, 3111
ScaI	AGTACT	2 cut(s)	2303, 3245
SchI	GAGTC	7 cut(s)	213, 256, 1164, 1908, 3130, 3298, 3366
SduI	GDGCHC	8 cut(s)	18, 54, 434, 625, 905, 1772, 2155, 2888
SfaNI	GCATC	7 cut(s)	349, 867, 1313, 1898, 2010, 2424, 2504
SfoI	GGCGCC	1 cut(s)	81
SinI	GGWCC	6 cut(s)	1225, 1709, 1945, 2935, 3095, 3111
SmiMI	CAYNNNNRTG	3 cut(s)	777, 1358, 2189
SmlI	CTYRAG	4 cut(s)	244, 287, 808, 3302
SmoI	CTYRAG	4 cut(s)	244, 287, 808, 3302
SphI	GCATGC	1 cut(s)	1163
SseBI	AGGCCT	1 cut(s)	1594
SspDI	GGCGCC	1 cut(s)	79
SspI	AATATT	2 cut(s)	967, 1429
SspMI	CTAG	3 cut(s)	855, 1409, 3140
SstI	GAGCTC	2 cut(s)	2155, 2888
StuI	AGGCCT	1 cut(s)	1594
StyI	CCWWGG	4 cut(s)	1974, 2314, 2662, 2824
TaiI	ACGT	7 cut(s)	105, 321, 582, 1123, 1192, 2164, 2852
TaqI	TCGA	3 cut(s)	168, 449, 2696
TatI	WGTACW	5 cut(s)	469, 1031, 2301, 2799, 3243
TauI	GCSGC	3 cut(s)	85, 111, 114
TfiI	GAWTC	9 cut(s)	293, 529, 1808, 1970, 1997, 2028, 2522, 2693, 3215
TscAI	CASTG	5 cut(s)	1293, 1884, 2274, 2289, 2937
TseFI	GTSAC	6 cut(s)	262, 1666, 2504, 2609, 3010, 3290
TseI	GCWGC	6 cut(s)	421, 995, 1313, 2492, 2680, 2837
Tsp45I	GTSAC	6 cut(s)	262, 1666, 2504, 2609, 3010, 3290
TspDTI	ATGAA	8 cut(s)	297, 358, 407, 1410, 2118, 2118, 2347, 2429
TspGWI	ACGGA	3 cut(s)	216, 840, 3103
TspRI	CASTG	5 cut(s)	1293, 1884, 2274, 2289, 2937
Tth111I	GACNNNGTC	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	3172
VneI	GTGCAC	3 cut(s)	430, 621, 1768
VpaK11BI	GGWCC	6 cut(s)	1225, 1709, 1945, 2935, 3095, 3111
XagI	CCTNNNNNAGG	1 cut(s)	2221
XapI	RAATTY	1 cut(s)	1645
XbaI	TCTAGA	1 cut(s)	1408
XceI	RCATGY	3 cut(s)	1163, 1370, 2641
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1780, 2116, 3105
XmiI	GTMKAC	2 cut(s)	321, 521
XmnI	GAANNNNTTC	1 cut(s)	3219
XspI	CTAG	3 cut(s)	855, 1409, 3140
ZraI	GACGTC	1 cut(s)	103
ZrmI	AGTACT	2 cut(s)	2303, 3245
Zsp2I	ATGCAT	1 cut(s)	1492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.