Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003083

Physical Location & Seq

Genomic Coordinates Reverse (-)

36939385 .. 36940716

Gene Structure 1332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0312500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAATTCAAATTCCACGGCAAAGATGTCAGATCCTCTTGTTGTTGGAAGAGTCATTGGAGATGTTATTGATCATTTCTCCCCCAGTGTTAAAATGACAGTGACTTACAACTCCAGCAAGAAGGTGTATAATGGGCATGAGCTATTTCCTTCCTCAGTAACCACGAAGCCTAAGGTTGAAGTTCAGGGAGGCGATCTGAGATCTTTCTTTACACTGGTCATGACTGACCCAGATGTTCCAGGTCCTAGTGATCCATATCTGAAGGAGCACTTGCACTGGATAGTCACGGATATCCCAGGAACAACTGACAACACATTTGGAAGGGAGGTGGTGAAATATGAAATGCCGAGGCCAAACATAGGGATCCACAGGTTTGTGTTCCTTCTGTTCAAGCAGAAAGGTAGGCAAACAGTGATTCCTCCTCCTTCCAAGGACCACTTCGACAGTCGAAAGTTTGCAGAAGCAAACGAGTTCGGGCTTCCGGTGGCTGCTGTTTTCTTCAATGCCCAGAGGGAAACTGCTGCAAGAAGACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

178

Amino Acids

20.02

Weight (kDa)

9.36

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	54 - 153	1e-11	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60740
fragaria_vesca	FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510 FvH4_3g31510
malus_domestica	MD03G1123900.v1.1 MD11G1140900.v1.1
prunus_persica	Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1 Prupe.6G106500_v2.0.a1
pyrus_communis	pycom11g11690
rosa_chinensis	RchiOBHm_Chr5g0058181
rosa_laevigata	RLG00000035201
rosa_multiflora	Rmu_co8117600.1_g000001 Rmu_sc0000367.1_g000039
rosa_roxburghii	Rroxscaffold_1G00022350 Rroxscaffold_1G00072570
rosa_rugosa	Rorug04G0431300 Rorug05G0312500 Rorug05G0312600
rosa_samantha	Rh5AG033200 Rh5AG380400 Rh5BG391600 Rh5CG035900 Rh5CG415600 Rh5DG028700
rosa_wichuraiana	Rw5G035820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	26, 245, 358, 371
AcsI	RAATTY	2 cut(s)	4, 10
AcuI	CTGAAG	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	359
AgsI	TTSAA	4 cut(s)	9, 179, 391, 502
AjnI	CCWGG	2 cut(s)	238, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	1 cut(s)	270
AlwI	GGATC	4 cut(s)	26, 245, 358, 371
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	2 cut(s)	488, 521
ApoI	RAATTY	2 cut(s)	4, 10
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AspS9I	GGNCC	2 cut(s)	242, 433
AsuHPI	GGTGA	1 cut(s)	343
AvaII	GGWCC	2 cut(s)	242, 433
AxyI	CCTNAGG	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	475, 508
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	240, 297
BclI	TGATCA	1 cut(s)	70
BfaI	CTAG	1 cut(s)	246
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	2 cut(s)	489, 522
BlsI	GCNGC	2 cut(s)	490, 523
Bme1390I	CCNGG	2 cut(s)	240, 297
Bme18I	GGWCC	2 cut(s)	242, 433
BmgT120I	GGNCC	2 cut(s)	242, 433
BmiI	GGNNCC	1 cut(s)	365
BmrFI	CCNGG	2 cut(s)	240, 297
BmrI	ACTGGG	1 cut(s)	78
BmuI	ACTGGG	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	97
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	4 cut(s)	15, 295, 347, 429
BsaWI	WCCGGW	1 cut(s)	481
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	3 cut(s)	84, 219, 281
Bse21I	CCTNAGG	1 cut(s)	171
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	240, 297
BseDI	CCNNGG	4 cut(s)	15, 295, 347, 429
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMII	CTCAG	2 cut(s)	168, 188
BseNI	ACTGG	3 cut(s)	84, 219, 281
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	2 cut(s)	475, 508
BshFI	GGCC	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	359
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	6 cut(s)	31, 70, 193, 200, 250, 363
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	2 cut(s)	167, 189
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	365
BspPI	GGATC	4 cut(s)	26, 245, 358, 371
BsrI	ACTGG	3 cut(s)	84, 219, 281
BssECI	CCNNGG	4 cut(s)	15, 295, 347, 429
BssMI	GATC	6 cut(s)	31, 70, 193, 200, 250, 363
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	240, 297
Bst4CI	ACNGT	3 cut(s)	100, 412, 446
Bst6I	CTCTTC	1 cut(s)	43
BstDEI	CTNAG	3 cut(s)	154, 171, 197
BstDSI	CCRYGG	1 cut(s)	15
BstKTI	GATC	6 cut(s)	34, 73, 196, 203, 253, 366
BstMBI	GATC	6 cut(s)	31, 70, 193, 200, 250, 363
BstNI	CCWGG	2 cut(s)	240, 297
BstSCI	CCNGG	2 cut(s)	238, 295
BstV1I	GCAGC	2 cut(s)	475, 508
BstX2I	RGATCY	3 cut(s)	31, 200, 363
BstYI	RGATCY	3 cut(s)	31, 200, 363
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	15
BtsIMutI	CAGTG	5 cut(s)	91, 105, 212, 274, 417
CciI	TCATGA	1 cut(s)	219
Cfr13I	GGNCC	2 cut(s)	242, 433
CviAII	CATG	2 cut(s)	137, 220
CviJI	RGCY	5 cut(s)	142, 169, 352, 478, 488
CviKI_1	RGCY	5 cut(s)	142, 169, 352, 478, 488
DdeI	CTNAG	3 cut(s)	154, 171, 197
DpnI	GATC	6 cut(s)	33, 72, 195, 202, 252, 365
DpnII	GATC	6 cut(s)	31, 70, 193, 200, 250, 363
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	2 cut(s)	242, 433
Eco57I	CTGAAG	1 cut(s)	281
Eco81I	CCTNAGG	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	238, 295
EcoRV	GATATC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	2 cut(s)	140, 223
FaiI	YATR	6 cut(s)	129, 138, 221, 256, 339, 359
FalI	AAGNNNNNCTT	4 cut(s)	254, 286, 422, 454
FatI	CATG	2 cut(s)	136, 219
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	489, 522
Fsp4HI	GCNGC	2 cut(s)	489, 522
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	2 cut(s)	489, 522
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	1 cut(s)	482
Hin1II	CATG	2 cut(s)	140, 223
HinfI	GANTC	2 cut(s)	51, 415
HpaII	CCGG	1 cut(s)	482
HphI	GGTGA	1 cut(s)	343
Hpy188I	TCNGA	3 cut(s)	31, 198, 261
Hpy188III	TCNNGA	1 cut(s)	220
HpyAV	CCTTC	6 cut(s)	115, 159, 256, 315, 392, 435
HpyCH4III	ACNGT	3 cut(s)	100, 412, 446
HpyCH4V	TGCA	3 cut(s)	274, 458, 524
HpyF3I	CTNAG	3 cut(s)	154, 171, 197
Hsp92II	CATG	2 cut(s)	140, 223
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	6 cut(s)	31, 70, 193, 200, 250, 363
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	2 cut(s)	475, 508
MaeI	CTAG	1 cut(s)	246
MaeIII	GTNAC	3 cut(s)	100, 157, 283
MalI	GATC	6 cut(s)	33, 72, 195, 202, 252, 365
MboI	GATC	6 cut(s)	31, 70, 193, 200, 250, 363
MboII	GAAGA	2 cut(s)	60, 490
MflI	RGATCY	3 cut(s)	31, 200, 363
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	2 cut(s)	4, 10
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	8 cut(s)	45, 163, 182, 319, 342, 429, 432, 504
MseI	TTAA	1 cut(s)	90
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	2 cut(s)	240, 297
MvaI	CCWGG	2 cut(s)	240, 297
NdeII	GATC	6 cut(s)	31, 70, 193, 200, 250, 363
NlaIII	CATG	2 cut(s)	140, 223
NlaIV	GGNNCC	1 cut(s)	365
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	2 cut(s)	100, 283
PagI	TCATGA	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	415
PkrI	GCNGC	2 cut(s)	490, 523
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	238, 295
PspGI	CCWGG	2 cut(s)	238, 295
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	2 cut(s)	242, 433
PspPPI	RGGWCCY	1 cut(s)	242
PsuI	RGATCY	3 cut(s)	31, 200, 363
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	489, 522
Sau3AI	GATC	6 cut(s)	31, 70, 193, 200, 250, 363
Sau96I	GGNCC	2 cut(s)	242, 433
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	240, 297
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	7 cut(s)	126, 144, 177, 244, 330, 374, 403
SinI	GGWCC	2 cut(s)	242, 433
Sse9I	AATT	2 cut(s)	4, 10
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	238, 295
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	3 cut(s)	100, 412, 446
TaqI	TCGA	2 cut(s)	441, 448
TasI	AATT	2 cut(s)	4, 10
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	5 cut(s)	91, 105, 219, 281, 417
TseFI	GTSAC	2 cut(s)	100, 283
TseI	GCWGC	2 cut(s)	488, 521
Tsp45I	GTSAC	2 cut(s)	100, 283
TspDTI	ATGAA	2 cut(s)	17, 354
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	5 cut(s)	91, 105, 219, 281, 417
VpaK11BI	GGWCC	2 cut(s)	242, 433
XapI	RAATTY	2 cut(s)	4, 10
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.