Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006958

Physical Location & Seq

Genomic Coordinates Reverse (-)

41816248 .. 41817034

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1302700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTTTCATCTTCTGTTGGTATATGCTAATTTCTCATGTAAAAATATATATGTACAGATTTCAAAAGCGTTGCAGCTTATACACGGGCGAGGAATAGCTCACTTAGATGTAAAACCTGATAATATATACGTGAAGAATGGTGTTTATAAGCTTGGTGACTTTGGATGTGCAACTCTACTTGACAACAGCCTGCCAATTGAAGAGGGTGATGCTCGATATATGCCGCAAGAAATCCTGAATGAGAAATATGATGATCTTGATAAGGCCGATATCTTCTCCTTGGGAGTTGCTGTTTATGAGCTTATTAGAGGTTCACCTTTGCCAGAATCAGGACCTCAAATTTTAAATCTCTGGGAGGGAAAGTTGCCACTCCTTCCTGGTCATTCGTTGCAATTTCAGAACTTACTCAAGTTCATGTTGGATCCAAATCCAGTCTGGAGGCCGTCAGCGAAAGATTTGGTCGAAAATCCAATTTTTGACAAGGTGCGGCGAAATGTGTTAGTGTGTAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007050 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022402 GO:0031570 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

172

Amino Acids

19.38

Weight (kDa)

6.07

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	10 - 158	1.7e-25	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	15 - 154	4.9e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006958)

Species	Orthologous Gene IDs
malus_domestica	MD11G1302700.v1.1
rosa_chinensis	RchiOBHm_Chr5g0045701 RchiOBHm_Chr5g0045731 RchiOBHm_Chr5g0045951 RchiOBHm_Chr5g0046271 RchiOBHm_Chr5g0046501 RchiOBHm_Chr5g0046521
rosa_multiflora	Rmu_sc0001035.1_g000079 Rmu_sc0003628.1_g000028
rosa_roxburghii	Rroxscaffold_1G00035460
rosa_rugosa	Rorug05G0224300
rosa_samantha	Rh5AG305900 Rh5AG306000 Rh5AG307000 Rh5AG307300 Rh5AG308200 Rh5AG308300 Rh5AG308500 Rh5AG308600 Rh5AG308700 Rh5AG308900
rosa_wichuraiana	Rw0G021490 Rw0G021570 Rw5G028580 Rw5G028770 Rw5G028870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AciI	CCGC	2 cut(s)	224, 487
AclWI	GGATC	2 cut(s)	416, 429
AcsI	RAATTY	1 cut(s)	339
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	63, 200
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	4 cut(s)	76, 98, 151, 301
AluI	AGCT	4 cut(s)	76, 98, 151, 301
AlwI	GGATC	2 cut(s)	416, 429
AoxI	GGCC	2 cut(s)	264, 440
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	3 cut(s)	167, 218, 306
AvaII	GGWCC	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	427
BciT130I	CCWGG	1 cut(s)	378
BisI	GCNGC	3 cut(s)	74, 224, 488
BlsI	GCNGC	3 cut(s)	75, 225, 489
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	457
BpuEI	CTTGAG	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	279
BsaXI	ACNNNNNCTCC	4 cut(s)	276, 306, 347, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	431
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	170
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	266, 442
BslI	CCNNNNNNNGG	1 cut(s)	329
BsnI	GGCC	2 cut(s)	266, 442
Bsp1407I	TGTACA	1 cut(s)	52
Bsp143I	GATC	2 cut(s)	253, 421
BspACI	CCGC	2 cut(s)	224, 487
BspANI	GGCC	2 cut(s)	266, 442
BspLI	GGNNCC	1 cut(s)	423
BspPI	GGATC	2 cut(s)	416, 429
BsrGI	TGTACA	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	2 cut(s)	253, 421
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	378
Bst6I	CTCTTC	1 cut(s)	195
BstAUI	TGTACA	1 cut(s)	52
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	170
BstKTI	GATC	2 cut(s)	256, 424
BstMBI	GATC	2 cut(s)	253, 421
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	266, 442
BtsCI	GGATG	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	2 cut(s)	36, 415
CviJI	RGCY	7 cut(s)	76, 98, 151, 189, 266, 301, 442
CviKI_1	RGCY	7 cut(s)	76, 98, 151, 189, 266, 301, 442
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	2 cut(s)	255, 423
DpnII	GATC	2 cut(s)	253, 421
DraI	TTTAAA	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	376
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	2 cut(s)	39, 418
FatI	CATG	2 cut(s)	35, 414
Fnu4HI	GCNGC	3 cut(s)	74, 224, 488
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	3 cut(s)	74, 224, 488
GluI	GCNGC	3 cut(s)	74, 224, 488
GsuI	CTGGAG	1 cut(s)	457
HaeIII	GGCC	2 cut(s)	266, 442
Hin1II	CATG	2 cut(s)	39, 418
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	1 cut(s)	326
HphI	GGTGA	3 cut(s)	167, 218, 306
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	399
Hpy188III	TCNNGA	4 cut(s)	235, 257, 330, 436
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	73, 170, 391
HpyF3I	CTNAG	1 cut(s)	103
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	39, 418
Kzo9I	GATC	2 cut(s)	253, 421
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	255, 423
MboI	GATC	2 cut(s)	253, 421
MboII	GAAGA	3 cut(s)	145, 212, 265
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	421
MluCI	AATT	6 cut(s)	28, 195, 339, 392, 471, 509
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	6 cut(s)	83, 196, 302, 345, 349, 432
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	378
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	378
NdeII	GATC	2 cut(s)	253, 421
NlaIII	CATG	2 cut(s)	39, 418
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	75, 225, 489
Ppu21I	YACGTR	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	332
PsiI	TTATAA	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	1 cut(s)	332
PspPPI	RGGWCCY	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	3 cut(s)	74, 224, 488
Sau3AI	GATC	2 cut(s)	253, 421
Sau96I	GGNCC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	378
SfaNI	GCATC	1 cut(s)	199
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	6 cut(s)	28, 195, 339, 392, 471, 509
SsiI	CCGC	2 cut(s)	224, 487
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	279
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	214, 462
TasI	AATT	6 cut(s)	28, 195, 339, 392, 471, 509
TatI	WGTACW	1 cut(s)	52
TauI	GCSGC	2 cut(s)	226, 490
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.