Rroxscaffold_1G00035460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006958
Physical Location & Seq
Reverse (-)
51533985 .. 51535471
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00035460.1

Sequence Viewer

Length: 819 bp
ATGATCTTGATCCAACTCCACTCTATTCTGATCAACAGTAGTGCTGCCTTCGTAATTGGTCTCTTCCACTTTATTCTGATCAACAGTAGTGCTGGCTTCTTGACAACTCTCTTCCTTTTTGTGCTTTTTCGATTTAGGCTTTCTGGGTTGATCCACAATGCTCTTTCTCTTCTTGTCATTGACTCTGGTATTTTCAACAACATTGCTCAGGGGAGCAGTTGGGGTTGGTGGTGCCTTCCTAGGGTTCTTTCTCAAAGTGCACAGTACACAATCAGAATCATCATCAATGAGCTGAAACTCTTGCATCAACCAAGCCTCGTTGTGACGAGAATCACAACCGCCCTCGTATCGGAACTCCCTCTTGAGCCCAATAACAACACCATCATCATCCTCAACTTCTCTCGAATACTGACCGCTCCAAGTGCCGGAACCGACTTTCCGATCAAATCGCTTGGCGGTGGGACTCAGCCTTCTCCGATGGGTGAAGAAATAGAGTGTCTTTTCATCCTCCACTTTCTTGGATTCACCGCCGCCGCCGCCGTAGATTTGCCAGACAACCCAGGGCTCATTGTCTCCGTAAAAATGAGGACAATCGGCGACGAAATCGGAGTGAAAGTGGTCACCCATCGCAATCCTGGTGTGGAGATAGTAATCGAGGAGTTCGTGATCTGTGGGAAGGAACCTCACCCCGACTGGGAGGCCGGAGCGAATTGCCATGATTGCAGAAATGGAAAGAATTTCAGAGAGAACTCTGAAATTCGGGAAGGAAAGAATTTCAGAGAGAAAAAAGAACTAGGGTTTCGGGAATTGGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.14

Weight (kDa)

6.07

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 231
AccBSI CCGCTC 1 cut(s) 416
AciI CCGC 7 cut(s) 339, 414, 456, 528, 531, 534, 537
AclWI GGATC 2 cut(s) 4, 145
AcsI RAATTY 3 cut(s) 736, 756, 772
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 4 cut(s) 241, 349, 425, 694
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 2 cut(s) 559, 634
AloI GAACNNNNNNTCC 2 cut(s) 421, 453
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 2 cut(s) 65, 577
Alw44I GTGCAC 1 cut(s) 258
AlwI GGATC 2 cut(s) 4, 145
AoxI GGCC 1 cut(s) 699
ApaLI GTGCAC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 3 cut(s) 736, 756, 772
AspA2I CCTAGG 1 cut(s) 239
AsuHPI GGTGA 4 cut(s) 494, 517, 613, 677
AvrII CCTAGG 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 231
BanII GRGCYC 2 cut(s) 369, 567
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 31
BccI CCATC 3 cut(s) 389, 472, 633
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 2 cut(s) 561, 636
BclI TGATCA 2 cut(s) 30, 78
BcoDI GTCTC 2 cut(s) 65, 577
BfaI CTAG 2 cut(s) 240, 794
BisI GCNGC 4 cut(s) 45, 531, 534, 537
BlnI CCTAGG 1 cut(s) 239
BlsI GCNGC 4 cut(s) 46, 532, 535, 538
Bme1390I CCNGG 2 cut(s) 561, 636
BmiI GGNNCC 3 cut(s) 233, 430, 681
BmrFI CCNGG 2 cut(s) 561, 636
BmrI ACTGGG 1 cut(s) 703
BmsI GCATC 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 703
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 383
BsaBI GATNNNNATC 2 cut(s) 8, 650
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 239, 559, 560
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 349, 425, 694
Bse1I ACTGG 1 cut(s) 698
Bse3DI GCAATG 1 cut(s) 201
Bse8I GATNNNNATC 2 cut(s) 8, 650
BseBI CCWGG 2 cut(s) 561, 636
BseDI CCNNGG 3 cut(s) 239, 559, 560
BseGI GGATG 2 cut(s) 387, 504
BseJI GATNNNNATC 2 cut(s) 8, 650
BseLI CCNNNNNNNGG 4 cut(s) 241, 349, 425, 694
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 2 cut(s) 221, 479
BseNI ACTGG 1 cut(s) 698
BseRI GAGGAG 1 cut(s) 671
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 1 cut(s) 701
BshNI GGYRCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 262
BsiSI CCGG 2 cut(s) 426, 702
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 4 cut(s) 241, 349, 425, 694
BsmAI GTCTC 2 cut(s) 65, 577
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 1 cut(s) 701
Bso31I GGTCTC 1 cut(s) 65
Bsp1286I GDGCHC 3 cut(s) 262, 369, 567
Bsp143I GATC 7 cut(s) 3, 9, 30, 78, 150, 441, 666
BspACI CCGC 7 cut(s) 339, 414, 456, 528, 531, 534, 537
BspANI GGCC 1 cut(s) 701
BspCNI CTCAG 2 cut(s) 220, 478
BspLI GGNNCC 3 cut(s) 233, 430, 681
BspPI GGATC 2 cut(s) 4, 145
BspT107I GGYRCC 1 cut(s) 231
BspTNI GGTCTC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 201
BsrI ACTGG 1 cut(s) 698
BssECI CCNNGG 3 cut(s) 239, 559, 560
BssMI GATC 7 cut(s) 3, 9, 30, 78, 150, 441, 666
BssT1I CCWWGG 1 cut(s) 239
Bst2UI CCWGG 2 cut(s) 561, 636
Bst4CI ACNGT 3 cut(s) 38, 86, 264
Bst6I CTCTTC 3 cut(s) 68, 116, 174
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 207, 465
BstEII GGTNACC 1 cut(s) 619
BstF5I GGATG 2 cut(s) 387, 504
BstKTI GATC 7 cut(s) 6, 12, 33, 81, 153, 444, 669
BstMAI GTCTC 2 cut(s) 65, 577
BstMBI GATC 7 cut(s) 3, 9, 30, 78, 150, 441, 666
BstMWI GCNNNNNNNGC 3 cut(s) 422, 536, 720
BstNI CCWGG 2 cut(s) 561, 636
BstPI GGTNACC 1 cut(s) 619
BstSCI CCNGG 2 cut(s) 559, 634
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 518
BsuRI GGCC 1 cut(s) 701
BtgZI GCGATG 1 cut(s) 611
BtsCI GGATG 2 cut(s) 387, 504
Cac8I GCNNGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 265
CviAII CATG 1 cut(s) 716
CviJI RGCY 8 cut(s) 96, 139, 292, 315, 367, 469, 565, 701
CviKI_1 RGCY 8 cut(s) 96, 139, 292, 315, 367, 469, 565, 701
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 2 cut(s) 207, 465
DpnI GATC 7 cut(s) 5, 11, 32, 80, 152, 443, 668
DpnII GATC 7 cut(s) 3, 9, 30, 78, 150, 441, 666
Eam1104I CTCTTC 3 cut(s) 68, 116, 174
EarI CTCTTC 3 cut(s) 68, 116, 174
Eco130I CCWWGG 1 cut(s) 239
Eco24I GRGCYC 2 cut(s) 369, 567
Eco31I GGTCTC 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 619
EcoO65I GGTNACC 1 cut(s) 619
EcoRII CCWGG 2 cut(s) 559, 634
EcoT14I CCWWGG 1 cut(s) 239
EcoT38I GRGCYC 2 cut(s) 369, 567
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 1 cut(s) 719
FaiI YATR 1 cut(s) 717
FaqI GGGAC 1 cut(s) 475
FatI CATG 1 cut(s) 715
FbaI TGATCA 2 cut(s) 30, 78
Fnu4HI GCNGC 4 cut(s) 45, 531, 534, 537
FokI GGATG 2 cut(s) 374, 491
FriOI GRGCYC 2 cut(s) 369, 567
Fsp4HI GCNGC 4 cut(s) 45, 531, 534, 537
FspBI CTAG 2 cut(s) 240, 794
GluI GCNGC 4 cut(s) 45, 531, 534, 537
HaeIII GGCC 1 cut(s) 701
HapII CCGG 2 cut(s) 426, 702
Hin1II CATG 1 cut(s) 719
HinfI GANTC 5 cut(s) 182, 276, 330, 463, 522
HpaII CCGG 2 cut(s) 426, 702
HphI GGTGA 4 cut(s) 494, 517, 613, 677
Hpy166II GTNNAC 2 cut(s) 260, 267
Hpy188III TCNNGA 7 cut(s) 7, 100, 362, 402, 664, 761, 803
Hpy8I GTNNAC 2 cut(s) 260, 267
Hpy99I CGWCG 1 cut(s) 602
HpyAV CCTTC 5 cut(s) 58, 245, 480, 670, 758
HpyCH4III ACNGT 3 cut(s) 38, 86, 264
HpyCH4V TGCA 3 cut(s) 260, 304, 723
HpyF10VI GCNNNNNNNGC 3 cut(s) 422, 536, 720
HpyF3I CTNAG 2 cut(s) 207, 465
Hsp92II CATG 1 cut(s) 719
Ksp22I TGATCA 2 cut(s) 30, 78
Kzo9I GATC 7 cut(s) 3, 9, 30, 78, 150, 441, 666
LmnI GCTCC 3 cut(s) 213, 421, 704
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 313
MaeI CTAG 2 cut(s) 240, 794
MaeIII GTNAC 2 cut(s) 322, 619
MalI GATC 7 cut(s) 5, 11, 32, 80, 152, 443, 668
MbiI CCGCTC 1 cut(s) 416
MboI GATC 7 cut(s) 3, 9, 30, 78, 150, 441, 666
MboII GAAGA 4 cut(s) 55, 103, 161, 497
MhlI GDGCHC 3 cut(s) 262, 369, 567
MluCI AATT 7 cut(s) 54, 709, 736, 756, 772, 806, 814
MlyI GAGTC 2 cut(s) 176, 457
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 9 cut(s) 326, 353, 369, 401, 518, 579, 649, 691, 693
MspI CCGG 2 cut(s) 426, 702
MspR9I CCNGG 2 cut(s) 561, 636
MvaI CCWGG 2 cut(s) 561, 636
MwoI GCNNNNNNNGC 3 cut(s) 422, 536, 720
NdeII GATC 7 cut(s) 3, 9, 30, 78, 150, 441, 666
NlaIII CATG 1 cut(s) 719
NlaIV GGNNCC 3 cut(s) 233, 430, 681
NmuCI GTSAC 2 cut(s) 322, 619
PasI CCCWGGG 1 cut(s) 560
PcsI WCGNNNNNNNCGW 1 cut(s) 660
PfeI GAWTC 3 cut(s) 276, 330, 522
PkrI GCNGC 4 cut(s) 46, 532, 535, 538
PleI GAGTC 2 cut(s) 176, 457
PpsI GAGTC 2 cut(s) 176, 457
Psp6I CCWGG 2 cut(s) 559, 634
PspEI GGTNACC 1 cut(s) 619
PspGI CCWGG 2 cut(s) 559, 634
PspN4I GGNNCC 3 cut(s) 233, 430, 681
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SatI GCNGC 4 cut(s) 45, 531, 534, 537
Sau3AI GATC 7 cut(s) 3, 9, 30, 78, 150, 441, 666
SchI GAGTC 2 cut(s) 176, 457
ScrFI CCNGG 2 cut(s) 561, 636
SduI GDGCHC 3 cut(s) 262, 369, 567
SetI ASST 2 cut(s) 294, 685
SfaNI GCATC 1 cut(s) 313
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 7 cut(s) 54, 709, 736, 756, 772, 806, 814
SsiI CCGC 7 cut(s) 339, 414, 456, 528, 531, 534, 537
SspMI CTAG 2 cut(s) 240, 794
StyD4I CCNGG 2 cut(s) 559, 634
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 3 cut(s) 38, 86, 264
TaqI TCGA 3 cut(s) 130, 403, 654
TasI AATT 7 cut(s) 54, 709, 736, 756, 772, 806, 814
TatI WGTACW 1 cut(s) 264
TauI GCSGC 3 cut(s) 533, 536, 539
TfiI GAWTC 3 cut(s) 276, 330, 522
TseFI GTSAC 2 cut(s) 322, 619
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 2 cut(s) 322, 619
TspDTI ATGAA 1 cut(s) 493
TspGWI ACGGA 1 cut(s) 565
VneI GTGCAC 1 cut(s) 258
XapI RAATTY 3 cut(s) 736, 756, 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XmaJI CCTAGG 1 cut(s) 239
XspI CTAG 2 cut(s) 240, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.