Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006958

Physical Location & Seq

Genomic Coordinates Forward (+)

43852793 .. 43854809

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G028870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCCTTCAGAGATCCTGAATGAGAAACATGACGATCTTGACAAGGCTGATATCTTCTCATTGGGAGTTGCTATGTATGAGCTTATTAGAGGTTCACCGTTACCGGAAGAAGGACCTCAAACCTTAAATCTTAAGAAGGAAAATTGCCACTGCTTCCTGGTCACTCCTTGCAACTTCAGAACTTGCTCAAGGCCATGTTGGATCCAAATCCAGTCTGCAGACCATCAGCTAAAGAGTTGGTTGAAAATCCAATGCATGGGCCTAGGACAACCACGATTGCGAATTGAAGAGATTGGGAGAGCACAATACCAAATCAGAATCATCATCAAGCTGAAACTCTTGCATCAACCACGCGTCGTTGTGACTCTCGTCACAACCGCCCTCGTATCGAAACTCCCGCTTGAGCCCAATTACAACACCATCATCCTCAACTTCTCTCGCATACTGAGCACTCCAAGTGCCGGAACCCACTTTCCGATCAAATCTCTTAGCGGTGGGACTCAGCCTTCTCCGATTGGTGAAGAAATAGAGAGTGTTTTCATCCTCCACTTTCTTGGACTCACCGCCGCCGTAGATCTGCCAGACAACCCAGGGCTCCTTGTCTCCGTAGAAATGAGGACAATCGGCGACGAAATCGGTGCGAAACTGGTCACCCATGGCGATCCTTGTGCGGAGATAGTAATCGAGCAGTTCCTGGTCAGTGGGAAGGAACCTGACCCCGACTGGGAGTTTGTTGGAGAGAATTGCCATGATTGCAGAAATGGAAAGAATTTCAGAGAGAAAAAAGAACTAGGGTTTCGGGAAGGAAAGAATTTCAGAGAGACCAAAAAACTAGGGTTTCGGGAAGGAAAGAATTTCAGAGAGACCCAAAAACTAGGGTTTCGGGAATTCTCTGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007050 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022402 GO:0031570 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

300

Amino Acids

33.88

Weight (kDa)

6.47

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006958)

Species	Orthologous Gene IDs
malus_domestica	MD11G1302700.v1.1
rosa_chinensis	RchiOBHm_Chr5g0045701 RchiOBHm_Chr5g0045731 RchiOBHm_Chr5g0045951 RchiOBHm_Chr5g0046271 RchiOBHm_Chr5g0046501 RchiOBHm_Chr5g0046521
rosa_multiflora	Rmu_sc0001035.1_g000079 Rmu_sc0003628.1_g000028
rosa_roxburghii	Rroxscaffold_1G00035460
rosa_rugosa	Rorug05G0224300
rosa_samantha	Rh5AG305900 Rh5AG306000 Rh5AG307000 Rh5AG307300 Rh5AG308200 Rh5AG308300 Rh5AG308500 Rh5AG308600 Rh5AG308700 Rh5AG308900
rosa_wichuraiana	Rw0G021490 Rw0G021570 Rw5G028580 Rw5G028770 Rw5G028870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	256
AccII	CGCG	1 cut(s)	354
AciI	CCGC	6 cut(s)	378, 398, 492, 564, 567, 671
AclWI	GGATC	4 cut(s)	7, 196, 209, 656
AcsI	RAATTY	4 cut(s)	769, 811, 853, 887
AcuI	CTGAAG	1 cut(s)	160
AfiI	CCNNNNNNNGG	4 cut(s)	110, 256, 461, 724
AflII	CTTAAG	1 cut(s)	131
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	244, 287
AjnI	CCWGG	3 cut(s)	156, 589, 693
AloI	GAACNNNNNNTCC	2 cut(s)	457, 489
AluBI	AGCT	3 cut(s)	82, 229, 331
AluI	AGCT	3 cut(s)	82, 229, 331
Alw21I	GWGCWC	2 cut(s)	304, 452
Alw26I	GTCTC	3 cut(s)	607, 815, 857
AlwI	GGATC	4 cut(s)	7, 196, 209, 656
AlwNI	CAGNNNCTG	1 cut(s)	694
AoxI	GGCC	2 cut(s)	191, 259
ApoI	RAATTY	4 cut(s)	769, 811, 853, 887
ArsI	GACNNNNNNTTYG	2 cut(s)	713, 745
AspA2I	CCTAGG	1 cut(s)	262
AspS9I	GGNCC	2 cut(s)	113, 259
AsuHPI	GGTGA	4 cut(s)	87, 530, 553, 643
AvaII	GGWCC	1 cut(s)	113
AvrII	CCTAGG	1 cut(s)	262
BamHI	GGATCC	1 cut(s)	201
BanII	GRGCYC	2 cut(s)	408, 597
Bbv12I	GWGCWC	2 cut(s)	304, 452
BccI	CCATC	2 cut(s)	231, 428
BceAI	ACGGC	1 cut(s)	554
BcgI	CGANNNNNNTGC	4 cut(s)	620, 650, 654, 684
BciT130I	CCWGG	3 cut(s)	158, 591, 695
BcoDI	GTCTC	3 cut(s)	607, 815, 857
BfaI	CTAG	4 cut(s)	263, 791, 833, 875
BfmI	CTRYAG	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	131
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	1 cut(s)	567
BlnI	CCTAGG	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	568
Bme1390I	CCNGG	3 cut(s)	158, 591, 695
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	113, 259
BmiI	GGNNCC	4 cut(s)	203, 466, 596, 711
BmrFI	CCNGG	3 cut(s)	158, 591, 695
BmrI	ACTGGG	1 cut(s)	733
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	733
BoxI	GACNNNNGTC	1 cut(s)	368
BpuEI	CTTGAG	2 cut(s)	172, 422
BsaBI	GATNNNNATC	2 cut(s)	206, 680
BsaI	GGTCTC	2 cut(s)	815, 857
BsaJI	CCNNGG	4 cut(s)	262, 589, 590, 655
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 256, 461, 724
Bse1I	ACTGG	3 cut(s)	211, 651, 728
Bse8I	GATNNNNATC	2 cut(s)	206, 680
BseBI	CCWGG	3 cut(s)	158, 591, 695
BseDI	CCNNGG	4 cut(s)	262, 589, 590, 655
BseGI	GGATG	2 cut(s)	423, 540
BseJI	GATNNNNATC	2 cut(s)	206, 680
BseLI	CCNNNNNNNGG	4 cut(s)	110, 256, 461, 724
BseMII	CTCAG	3 cut(s)	437, 515, 885
BseNI	ACTGG	3 cut(s)	211, 651, 728
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	193, 261
BsiHKAI	GWGCWC	2 cut(s)	304, 452
BsiSI	CCGG	2 cut(s)	104, 462
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	4 cut(s)	110, 256, 461, 724
BsmAI	GTCTC	3 cut(s)	607, 815, 857
BsmFI	GGGAC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	193, 261
Bso31I	GGTCTC	2 cut(s)	815, 857
Bsp1286I	GDGCHC	4 cut(s)	304, 408, 452, 597
Bsp143I	GATC	6 cut(s)	12, 34, 201, 477, 574, 661
Bsp19I	CCATGG	1 cut(s)	655
BspACI	CCGC	6 cut(s)	378, 398, 492, 564, 567, 671
BspANI	GGCC	2 cut(s)	193, 261
BspCNI	CTCAG	3 cut(s)	438, 514, 886
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	4 cut(s)	203, 466, 596, 711
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	4 cut(s)	7, 196, 209, 656
BspTI	CTTAAG	1 cut(s)	131
BspTNI	GGTCTC	2 cut(s)	815, 857
BsrI	ACTGG	3 cut(s)	211, 651, 728
BssECI	CCNNGG	4 cut(s)	262, 589, 590, 655
BssMI	GATC	6 cut(s)	12, 34, 201, 477, 574, 661
BssT1I	CCWWGG	2 cut(s)	262, 655
Bst2UI	CCWGG	3 cut(s)	158, 591, 695
Bst4CI	ACNGT	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	282
BstAFI	CTTAAG	1 cut(s)	131
BstDEI	CTNAG	4 cut(s)	446, 488, 501, 894
BstDSI	CCRYGG	1 cut(s)	655
BstEII	GGTNACC	1 cut(s)	649
BstF5I	GGATG	2 cut(s)	423, 540
BstFNI	CGCG	1 cut(s)	354
BstKTI	GATC	6 cut(s)	15, 37, 204, 480, 577, 664
BstMAI	GTCTC	3 cut(s)	607, 815, 857
BstMBI	GATC	6 cut(s)	12, 34, 201, 477, 574, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	447, 753
BstNI	CCWGG	3 cut(s)	158, 591, 695
BstPAI	GACNNNNGTC	1 cut(s)	368
BstPI	GGTNACC	1 cut(s)	649
BstSCI	CCNGG	3 cut(s)	156, 589, 693
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	354
BstX2I	RGATCY	3 cut(s)	12, 201, 574
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	3 cut(s)	12, 201, 574
BsuRI	GGCC	2 cut(s)	193, 261
BtgI	CCRYGG	1 cut(s)	655
BtsCI	GGATG	2 cut(s)	423, 540
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	148, 706
CaiI	CAGNNNCTG	1 cut(s)	694
Cfr13I	GGNCC	2 cut(s)	113, 259
CseI	GACGC	1 cut(s)	343
CviAII	CATG	5 cut(s)	29, 195, 256, 656, 749
CviJI	RGCY	9 cut(s)	47, 82, 193, 229, 261, 331, 406, 505, 595
CviKI_1	RGCY	9 cut(s)	47, 82, 193, 229, 261, 331, 406, 505, 595
DdeI	CTNAG	4 cut(s)	446, 488, 501, 894
DpnI	GATC	6 cut(s)	14, 36, 203, 479, 576, 663
DpnII	GATC	6 cut(s)	12, 34, 201, 477, 574, 661
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	262, 655
Eco24I	GRGCYC	2 cut(s)	408, 597
Eco31I	GGTCTC	2 cut(s)	815, 857
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	160
Eco91I	GGTNACC	1 cut(s)	649
EcoO109I	RGGNCCY	1 cut(s)	113
EcoO65I	GGTNACC	1 cut(s)	649
EcoRI	GAATTC	1 cut(s)	887
EcoRII	CCWGG	3 cut(s)	156, 589, 693
EcoRV	GATATC	1 cut(s)	52
EcoT14I	CCWWGG	2 cut(s)	262, 655
EcoT22I	ATGCAT	1 cut(s)	257
EcoT38I	GRGCYC	2 cut(s)	408, 597
ErhI	CCWWGG	2 cut(s)	262, 655
FaeI	CATG	5 cut(s)	32, 198, 259, 659, 752
FaiI	YATR	8 cut(s)	30, 74, 78, 196, 257, 443, 657, 750
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	5 cut(s)	28, 194, 255, 655, 748
FauI	CCCGC	1 cut(s)	405
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	2 cut(s)	410, 527
FriOI	GRGCYC	2 cut(s)	408, 597
Fsp4HI	GCNGC	1 cut(s)	567
FspBI	CTAG	4 cut(s)	263, 791, 833, 875
GluI	GCNGC	1 cut(s)	567
HaeIII	GGCC	2 cut(s)	193, 261
HapII	CCGG	2 cut(s)	104, 462
HgaI	GACGC	1 cut(s)	343
Hin1II	CATG	5 cut(s)	32, 198, 259, 659, 752
HinfI	GANTC	4 cut(s)	318, 364, 499, 558
HpaII	CCGG	2 cut(s)	104, 462
HphI	GGTGA	4 cut(s)	87, 530, 553, 643
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	9 cut(s)	10, 179, 317, 477, 513, 776, 818, 860, 895
Hpy188III	TCNNGA	5 cut(s)	16, 38, 800, 842, 884
Hpy8I	GTNNAC	1 cut(s)	95
Hpy99I	CGWCG	2 cut(s)	359, 632
HpyAV	CCTTC	7 cut(s)	15, 104, 130, 516, 700, 797, 839
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	171, 218, 255, 343, 756
HpyF10VI	GCNNNNNNNGC	2 cut(s)	447, 753
HpyF3I	CTNAG	4 cut(s)	446, 488, 501, 894
Hsp92II	CATG	5 cut(s)	32, 198, 259, 659, 752
Kzo9I	GATC	6 cut(s)	12, 34, 201, 477, 574, 661
LmnI	GCTCC	1 cut(s)	600
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	4 cut(s)	263, 791, 833, 875
MaeIII	GTNAC	5 cut(s)	99, 160, 361, 370, 649
MalI	GATC	6 cut(s)	14, 36, 203, 479, 576, 663
MboI	GATC	6 cut(s)	12, 34, 201, 477, 574, 661
MboII	GAAGA	4 cut(s)	46, 119, 299, 533
MflI	RGATCY	3 cut(s)	12, 201, 574
MhlI	GDGCHC	4 cut(s)	304, 408, 452, 597
MluCI	AATT	9 cut(s)	142, 282, 409, 742, 769, 811, 853, 887, 898
MluI	ACGCGT	1 cut(s)	352
MlyI	GAGTC	3 cut(s)	358, 493, 552
MmeI	TCCRAC	2 cut(s)	179, 715
MnlI	CCTC	6 cut(s)	83, 126, 392, 437, 554, 609
Mph1103I	ATGCAT	1 cut(s)	257
MseI	TTAA	2 cut(s)	125, 132
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	2 cut(s)	104, 462
MspR9I	CCNGG	3 cut(s)	158, 591, 695
MvaI	CCWGG	3 cut(s)	158, 591, 695
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	447, 753
NcoI	CCATGG	1 cut(s)	655
NdeII	GATC	6 cut(s)	12, 34, 201, 477, 574, 661
NlaIII	CATG	5 cut(s)	32, 198, 259, 659, 752
NlaIV	GGNNCC	4 cut(s)	203, 466, 596, 711
NmuCI	GTSAC	4 cut(s)	160, 361, 370, 649
NsiI	ATGCAT	1 cut(s)	257
PasI	CCCWGGG	1 cut(s)	590
PfeI	GAWTC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	568
PleI	GAGTC	3 cut(s)	358, 493, 552
PpsI	GAGTC	3 cut(s)	358, 493, 552
PpuMI	RGGWCCY	1 cut(s)	113
PshAI	GACNNNNGTC	1 cut(s)	368
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	3 cut(s)	156, 589, 693
PspEI	GGTNACC	1 cut(s)	649
PspGI	CCWGG	3 cut(s)	156, 589, 693
PspN4I	GGNNCC	4 cut(s)	203, 466, 596, 711
PspPI	GGNCC	2 cut(s)	113, 259
PspPPI	RGGWCCY	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	694
PsuI	RGATCY	3 cut(s)	12, 201, 574
SaqAI	TTAA	2 cut(s)	125, 132
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	6 cut(s)	12, 34, 201, 477, 574, 661
Sau96I	GGNCC	2 cut(s)	113, 259
SchI	GAGTC	3 cut(s)	358, 493, 552
ScrFI	CCNGG	3 cut(s)	158, 591, 695
SduI	GDGCHC	4 cut(s)	304, 408, 452, 597
SetI	ASST	7 cut(s)	84, 94, 118, 125, 231, 333, 715
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	113
SmlI	CTYRAG	3 cut(s)	131, 187, 401
SmoI	CTYRAG	3 cut(s)	131, 187, 401
Sse9I	AATT	9 cut(s)	142, 282, 409, 742, 769, 811, 853, 887, 898
SsiI	CCGC	6 cut(s)	378, 398, 492, 564, 567, 671
SspMI	CTAG	4 cut(s)	263, 791, 833, 875
StyD4I	CCNGG	3 cut(s)	156, 589, 693
StyI	CCWWGG	2 cut(s)	262, 655
TaaI	ACNGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	389, 684
TasI	AATT	9 cut(s)	142, 282, 409, 742, 769, 811, 853, 887, 898
TauI	GCSGC	1 cut(s)	569
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	2 cut(s)	125, 132
Tru9I	TTAA	2 cut(s)	125, 132
TscAI	CASTG	2 cut(s)	155, 706
TseFI	GTSAC	4 cut(s)	160, 361, 370, 649
Tsp45I	GTSAC	4 cut(s)	160, 361, 370, 649
TspDTI	ATGAA	1 cut(s)	529
TspGWI	ACGGA	1 cut(s)	595
TspRI	CASTG	2 cut(s)	155, 706
Van91I	CCANNNNNTGG	1 cut(s)	256
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	4 cut(s)	769, 811, 853, 887
XmaJI	CCTAGG	1 cut(s)	262
XspI	CTAG	4 cut(s)	263, 791, 833, 875
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.