Rh5AG307300
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006958
Physical Location & Seq
Reverse (-)
44025459 .. 44031826
6368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG307300.1

Sequence Viewer

Length: 534 bp
ATGGGTTCCATCATTCTTTTTGTGCAGAAAGATATTCAAGGGAGGATTGGCAAAGAACAAGCGGTTCTTTGCTTTGCTCAGCTCACTGGCATTGATGCAGAGAGGGAAACTCTATGTTGGATATTATGTGGCTATGAAGGGGTTCTCTGCTTTGCTTATCAGCATTGGCACCCAACAAAGGGTGCCTTTGGATGTGCAACACTACTTGATAAAAGCCTACCAATTGAAGAGGGTGATGCTCGCTATATGCCTTCAGAGATCCTGAATGAGAAACATGACGATCTTGACAAGGCTGATATCTTCTCATTGGGAGTTGCTATGTATGAGCTTATTAGAGGTTCACCGTTACCGGAAGAAGGGCCTCAAACCTTAAATCTTAAGAAAGGAAAATTGCCACTGCTTCCTGGTCACTCCTTGCAACTTCAGAACTTGCTCAAGGCCATGTTGGATCCAAATCCAGTCTGCAGACCATCAGCTAAAGAGTTGGTTGAAAATCTAATGTTCCACAGGGTGCTAAAAAATGCATGGGCCTAG

Protein Analysis

177

Amino Acids

19.76

Weight (kDa)

5.73

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 63 - 165 5e-10 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 168, 182
AciI CCGC 1 cut(s) 62
AclWI GGATC 3 cut(s) 253, 443, 456
AcuI CTGAAG 2 cut(s) 237, 407
AdeI CACNNNGTG 1 cut(s) 511
AfiI CCNNNNNNNGG 3 cut(s) 178, 179, 356
AflII CTTAAG 1 cut(s) 377
AgsI TTSAA 3 cut(s) 38, 227, 491
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 3 cut(s) 82, 328, 476
AluI AGCT 3 cut(s) 82, 328, 476
AlwI GGATC 3 cut(s) 253, 443, 456
AoxI GGCC 3 cut(s) 359, 438, 528
Asp700I GAANNNNTTC 1 cut(s) 141
AspS9I GGNCC 2 cut(s) 359, 528
AsuHPI GGTGA 2 cut(s) 245, 333
BamHI GGATCC 1 cut(s) 448
BanI GGYRCC 2 cut(s) 168, 182
BccI CCATC 2 cut(s) 17, 478
BciT130I CCWGG 1 cut(s) 405
BfaI CTAG 1 cut(s) 532
BfmI CTRYAG 1 cut(s) 463
BfrI CTTAAG 1 cut(s) 377
BlpI GCTNAGC 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 405
BmgT120I GGNCC 2 cut(s) 359, 528
BmiI GGNNCC 4 cut(s) 7, 170, 184, 450
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 2 cut(s) 85, 226
BplI GAGNNNNNCTC 2 cut(s) 94, 126
Bpu1102I GCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 419
BsaBI GATNNNNATC 1 cut(s) 453
BsaWI WCCGGW 1 cut(s) 349
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 179, 356
Bse1I ACTGG 2 cut(s) 91, 458
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 1 cut(s) 405
BseGI GGATG 1 cut(s) 197
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 3 cut(s) 178, 179, 356
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 91, 458
BsgI GTGCAG 1 cut(s) 44
BshFI GGCC 3 cut(s) 361, 440, 530
BshNI GGYRCC 2 cut(s) 168, 182
BsiSI CCGG 1 cut(s) 350
BslI CCNNNNNNNGG 3 cut(s) 178, 179, 356
BsnI GGCC 3 cut(s) 361, 440, 530
Bsp143I GATC 3 cut(s) 258, 280, 448
Bsp1720I GCTNAGC 1 cut(s) 78
BspACI CCGC 1 cut(s) 62
BspANI GGCC 3 cut(s) 361, 440, 530
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 4 cut(s) 7, 170, 184, 450
BspMAI CTGCAG 1 cut(s) 467
BspPI GGATC 3 cut(s) 253, 443, 456
BspT107I GGYRCC 2 cut(s) 168, 182
BspTI CTTAAG 1 cut(s) 377
BsrI ACTGG 2 cut(s) 91, 458
BssMI GATC 3 cut(s) 258, 280, 448
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 345
Bst6I CTCTTC 1 cut(s) 222
BstAFI CTTAAG 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 197
BstKTI GATC 3 cut(s) 261, 283, 451
BstMBI GATC 3 cut(s) 258, 280, 448
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 463
BstX2I RGATCY 2 cut(s) 258, 448
BstYI RGATCY 2 cut(s) 258, 448
BsuRI GGCC 3 cut(s) 361, 440, 530
BtsCI GGATG 1 cut(s) 197
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 2 cut(s) 84, 395
Cac8I GCNNGC 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 359, 528
CviAII CATG 3 cut(s) 275, 442, 525
CviJI RGCY 9 cut(s) 82, 132, 216, 293, 328, 361, 440, 476, 530
CviKI_1 RGCY 9 cut(s) 82, 132, 216, 293, 328, 361, 440, 476, 530
DdeI CTNAG 1 cut(s) 78
DpnI GATC 3 cut(s) 260, 282, 450
DpnII GATC 3 cut(s) 258, 280, 448
DraIII CACNNNGTG 1 cut(s) 511
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco32I GATATC 1 cut(s) 298
Eco57I CTGAAG 2 cut(s) 237, 407
EcoO109I RGGNCCY 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 403
EcoRV GATATC 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 526
FaeI CATG 3 cut(s) 278, 445, 528
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 170, 202
FatI CATG 3 cut(s) 274, 441, 524
FokI GGATG 1 cut(s) 204
FspBI CTAG 1 cut(s) 532
HaeIII GGCC 3 cut(s) 361, 440, 530
HapII CCGG 1 cut(s) 350
Hin1II CATG 3 cut(s) 278, 445, 528
HpaII CCGG 1 cut(s) 350
HphI GGTGA 2 cut(s) 245, 333
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 256, 426
Hpy188III TCNNGA 2 cut(s) 262, 284
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 3 cut(s) 131, 261, 350
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4V TGCA 6 cut(s) 25, 98, 197, 418, 465, 524
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 3 cut(s) 278, 445, 528
Kzo9I GATC 3 cut(s) 258, 280, 448
LpnPI CCDG 7 cut(s) 72, 275, 363, 390, 417, 471, 493
LweI GCATC 2 cut(s) 85, 226
MaeI CTAG 1 cut(s) 532
MaeIII GTNAC 2 cut(s) 345, 407
MalI GATC 3 cut(s) 260, 282, 450
MboI GATC 3 cut(s) 258, 280, 448
MboII GAAGA 3 cut(s) 239, 292, 365
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 2 cut(s) 258, 448
MluCI AATT 2 cut(s) 222, 389
MmeI TCCRAC 2 cut(s) 98, 426
MnlI CCTC 5 cut(s) 36, 96, 223, 329, 372
Mph1103I ATGCAT 1 cut(s) 526
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 2 cut(s) 371, 378
MspCI CTTAAG 1 cut(s) 377
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 405
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 405
NdeII GATC 3 cut(s) 258, 280, 448
NlaIII CATG 3 cut(s) 278, 445, 528
NlaIV GGNNCC 4 cut(s) 7, 170, 184, 450
NmuCI GTSAC 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 4 cut(s) 7, 170, 184, 450
PspPI GGNCC 2 cut(s) 359, 528
PstI CTGCAG 1 cut(s) 467
PsuI RGATCY 2 cut(s) 258, 448
SaqAI TTAA 2 cut(s) 371, 378
Sau3AI GATC 3 cut(s) 258, 280, 448
Sau96I GGNCC 2 cut(s) 359, 528
ScrFI CCNGG 1 cut(s) 405
SetI ASST 5 cut(s) 84, 330, 340, 371, 478
SfaNI GCATC 2 cut(s) 85, 226
SfcI CTRYAG 1 cut(s) 463
SmlI CTYRAG 2 cut(s) 377, 434
SmoI CTYRAG 2 cut(s) 377, 434
Sse9I AATT 2 cut(s) 222, 389
SsiI CCGC 1 cut(s) 62
SspMI CTAG 1 cut(s) 532
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 345
TasI AATT 2 cut(s) 222, 389
Tru1I TTAA 2 cut(s) 371, 378
Tru9I TTAA 2 cut(s) 371, 378
TscAI CASTG 2 cut(s) 91, 402
TseFI GTSAC 1 cut(s) 407
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 2 cut(s) 91, 402
Vha464I CTTAAG 1 cut(s) 377
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 1 cut(s) 532
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.