Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006958

Physical Location & Seq

Genomic Coordinates Forward (+)

23272195 .. 23274626

Gene Structure 2432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0224300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGCAAGCGAAAGGCGAAGGCAAAGCCTGCGCCTAAGAAGAGAATGGACAAGCTGGATACTGTTTTCACTTGCCCCTTTTGCAACCATGGTGACAGCGTCGAGTGCCGCATTGACATGAAGAACTTGATTGGTGAAGCTATATGTAACATCTGTCAAGAGAGTTTCAGCACAACCATCACAGCTTTGACTGAAGCCATAGACATATATAGTGAATGGATAGACGAATGCGAGCGTGTCAACACTGTTGATGATGATGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007050 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022402 GO:0031570 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

88

Amino Acids

9.85

Weight (kDa)

4.88

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Elf1	PF05129	2 - 78	6.8e-32	Transcription elongation factor Elf1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006958)

Species	Orthologous Gene IDs
malus_domestica	MD11G1302700.v1.1
rosa_chinensis	RchiOBHm_Chr5g0045701 RchiOBHm_Chr5g0045731 RchiOBHm_Chr5g0045951 RchiOBHm_Chr5g0046271 RchiOBHm_Chr5g0046501 RchiOBHm_Chr5g0046521
rosa_multiflora	Rmu_sc0001035.1_g000079 Rmu_sc0003628.1_g000028
rosa_roxburghii	Rroxscaffold_1G00035460
rosa_rugosa	Rorug05G0224300
rosa_samantha	Rh5AG305900 Rh5AG306000 Rh5AG307000 Rh5AG307300 Rh5AG308200 Rh5AG308300 Rh5AG308500 Rh5AG308600 Rh5AG308700 Rh5AG308900
rosa_wichuraiana	Rw0G021490 Rw0G021570 Rw5G028580 Rw5G028770 Rw5G028870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	213
AluBI	AGCT	3 cut(s)	55, 140, 185
AluI	AGCT	3 cut(s)	55, 140, 185
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	104, 146
BccI	CCATC	2 cut(s)	185, 251
BciVI	GTATCC	1 cut(s)	52
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	233
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	64, 247
Bst6I	CTCTTC	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	3 cut(s)	8, 30, 233
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 81, 105
BsuI	GTATCC	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	3 cut(s)	8, 30, 233
CfoI	GCGC	1 cut(s)	34
CseI	GACGC	1 cut(s)	88
CviAII	CATG	2 cut(s)	89, 118
CviJI	RGCY	5 cut(s)	28, 55, 140, 185, 197
CviKI_1	RGCY	5 cut(s)	28, 55, 140, 185, 197
DdeI	CTNAG	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	2 cut(s)	92, 121
FaiI	YATR	8 cut(s)	90, 119, 143, 145, 200, 206, 208, 210
FatI	CATG	2 cut(s)	88, 117
Fnu4HI	GCNGC	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	109
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	109
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	2 cut(s)	92, 121
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HphI	GGTGA	2 cut(s)	104, 146
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	2 cut(s)	64, 247
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 81, 105
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	92, 121
HspAI	GCGC	1 cut(s)	32
LpnPI	CCDG	2 cut(s)	41, 42
MaeIII	GTNAC	2 cut(s)	92, 146
MboII	GAAGA	2 cut(s)	52, 133
MseI	TTAA	1 cut(s)	265
MslI	CAYNNNNRTG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	29, 81, 105
NcoI	CCATGG	1 cut(s)	88
NlaIII	CATG	2 cut(s)	92, 121
NmuCI	GTSAC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	233
PflFI	GACNNNGTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	265
SatI	GCNGC	1 cut(s)	109
SetI	ASST	3 cut(s)	57, 142, 187
SmiMI	CAYNNNNRTG	1 cut(s)	116
SsiI	CCGC	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	64, 247
TaqI	TCGA	1 cut(s)	102
TauI	GCSGC	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	265
Tru9I	TTAA	1 cut(s)	265
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	250
Tth111I	GACNNNGTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.