Rw0G021570
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00995
OG0006958
Physical Location & Seq
Forward (+)
26392 .. 28949
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G021570.1

Sequence Viewer

Length: 1068 bp
ATGGTTGTGATAAATTTAGGACCTATTGAATGTATACCCTTTCAGAGGGAAGTAAATCTGCTAGCTAATCCAGATAAGCACCCAACAAAGGGTGCCTTTGGATGTGCAACACTACTTGATAAAAGCCTACCAATTGAAGAGGGTGATGCTCGCTATATGCCTTCAGAGATCCTGAATGAGAAACATGACGATCTTGACAAGGCTGATATCTTCTCATTGGGAGTTGCTATGTATGAGCTTATTAGAGGTTCACCGTTACCGGAAGAAGGACCTCAAACCTTAAATCTTAAGAAAGGAAAATTGCCACTGCTTCCTGGTCACTCCTTGCAACTTCAGAACTTGCTCAAGGCCATGTTGGATCCAAATCCAGTCTGCAGACCATCAGCTAAAGAGTTGGTTGAAAAATGTTCCACAGGGTGCATGGGCCTAGGACAACCACGATTGCGAATTGAAGAGATTGGGAGAGCACAATACCAAATCAGAATCATCATCAAGCTGAAACTCTTGCATCAACCACGCGTCGTTGTGACTCTCGTCACAACCGCCCTCGTATCGAAACTCCCGCTTGAGCCCAATTACAACACCATCATCCTCAACTTCTCTCGCATACTGAGCACTCCAAGTGCCGGAACCCACTTTCCGATCAAATCTCTTAGCGGTGGGACTCAGCCTTCTCCGATTGGTGAAGAAATAGAGAGTGTTTTCATCCTCCACTTTCTTGGACTCACCGCCGCCGTAGATCTGCCAGACAACCCAGGGCTCCTTGTCTCCGAAGAAATGAGGACAATCGGCGACGAAATCGGTGCGAAACTGGTCACCCATGGCGATCCTTGTGCGGAGATAGTAATCGAGCAGTTCCTGGTCAGTGGGAAGGAACCTGACCCCGACTGGGAGTTTGTTGGAGAGAATTGCCATGATTGCAGAAATGGAAAGAATTTCAGAGAGAAAAAAGAACTAGGGTTTCGGGAAGGAAAGAATTTCAGAGAGACCAAAAAACTAGGGTTTCGGGAAGGAAAGAATTTCAGAGAGACCCAAAAACTAGGGTTTCGGGAATTCTCTGAGAATTGA

Protein Analysis

355

Amino Acids

39.45

Weight (kDa)

5.98

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 19 - 134 1e-09 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 34
AccII CGCG 1 cut(s) 519
AciI CCGC 6 cut(s) 543, 563, 657, 729, 732, 836
AclWI GGATC 4 cut(s) 163, 353, 366, 821
AcsI RAATTY 5 cut(s) 13, 934, 976, 1018, 1052
AcuI CTGAAG 2 cut(s) 147, 317
AdeI CACNNNGTG 1 cut(s) 417
AfiI CCNNNNNNNGG 6 cut(s) 45, 88, 89, 266, 626, 889
AflII CTTAAG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 517
AgsI TTSAA 4 cut(s) 29, 137, 401, 452
AjnI CCWGG 3 cut(s) 313, 754, 858
AloI GAACNNNNNNTCC 2 cut(s) 622, 654
AluBI AGCT 4 cut(s) 65, 238, 386, 496
AluI AGCT 4 cut(s) 65, 238, 386, 496
Alw21I GWGCWC 2 cut(s) 469, 617
Alw26I GTCTC 3 cut(s) 772, 980, 1022
AlwI GGATC 4 cut(s) 163, 353, 366, 821
AlwNI CAGNNNCTG 1 cut(s) 859
AoxI GGCC 2 cut(s) 348, 424
ApoI RAATTY 5 cut(s) 13, 934, 976, 1018, 1052
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
AspA2I CCTAGG 1 cut(s) 427
AspS9I GGNCC 3 cut(s) 20, 269, 424
AsuHPI GGTGA 5 cut(s) 155, 243, 695, 718, 808
AsuNHI GCTAGC 1 cut(s) 61
AvaII GGWCC 2 cut(s) 20, 269
AvrII CCTAGG 1 cut(s) 427
BamHI GGATCC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 2 cut(s) 573, 762
Bbv12I GWGCWC 2 cut(s) 469, 617
BccI CCATC 2 cut(s) 388, 593
BceAI ACGGC 1 cut(s) 719
BcgI CGANNNNNNTGC 4 cut(s) 785, 815, 819, 849
BciT130I CCWGG 3 cut(s) 315, 756, 860
BcoDI GTCTC 3 cut(s) 772, 980, 1022
BfaI CTAG 5 cut(s) 62, 428, 956, 998, 1040
BfmI CTRYAG 1 cut(s) 373
BfrI CTTAAG 1 cut(s) 287
BglII AGATCT 1 cut(s) 739
BisI GCNGC 1 cut(s) 732
BlnI CCTAGG 1 cut(s) 427
BlsI GCNGC 1 cut(s) 733
Bme1390I CCNGG 3 cut(s) 315, 756, 860
Bme18I GGWCC 2 cut(s) 20, 269
BmgT120I GGNCC 3 cut(s) 20, 269, 424
BmiI GGNNCC 5 cut(s) 94, 360, 631, 761, 876
BmrFI CCNGG 3 cut(s) 315, 756, 860
BmrI ACTGGG 1 cut(s) 898
BmsI GCATC 2 cut(s) 136, 517
BmtI GCTAGC 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 898
BoxI GACNNNNGTC 1 cut(s) 533
BpuEI CTTGAG 2 cut(s) 329, 587
BsaBI GATNNNNATC 2 cut(s) 363, 845
BsaI GGTCTC 2 cut(s) 980, 1022
BsaJI CCNNGG 4 cut(s) 427, 754, 755, 820
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 6 cut(s) 45, 88, 89, 266, 626, 889
Bse1I ACTGG 3 cut(s) 368, 816, 893
Bse8I GATNNNNATC 2 cut(s) 363, 845
BseBI CCWGG 3 cut(s) 315, 756, 860
BseDI CCNNGG 4 cut(s) 427, 754, 755, 820
BseGI GGATG 3 cut(s) 107, 588, 705
BseJI GATNNNNATC 2 cut(s) 363, 845
BseLI CCNNNNNNNGG 6 cut(s) 45, 88, 89, 266, 626, 889
BseMII CTCAG 3 cut(s) 602, 680, 1050
BseNI ACTGG 3 cut(s) 368, 816, 893
Bsh1236I CGCG 1 cut(s) 519
BshFI GGCC 2 cut(s) 350, 426
BshNI GGYRCC 1 cut(s) 92
BsiHKAI GWGCWC 2 cut(s) 469, 617
BsiSI CCGG 2 cut(s) 260, 627
BslFI GGGAC 1 cut(s) 676
BslI CCNNNNNNNGG 6 cut(s) 45, 88, 89, 266, 626, 889
BsmAI GTCTC 3 cut(s) 772, 980, 1022
BsmFI GGGAC 1 cut(s) 676
BsnI GGCC 2 cut(s) 350, 426
Bso31I GGTCTC 2 cut(s) 980, 1022
Bsp1286I GDGCHC 4 cut(s) 469, 573, 617, 762
Bsp143I GATC 6 cut(s) 168, 190, 358, 642, 739, 826
Bsp19I CCATGG 1 cut(s) 820
BspACI CCGC 6 cut(s) 543, 563, 657, 729, 732, 836
BspANI GGCC 2 cut(s) 350, 426
BspCNI CTCAG 3 cut(s) 603, 679, 1051
BspFNI CGCG 1 cut(s) 519
BspLI GGNNCC 5 cut(s) 94, 360, 631, 761, 876
BspMAI CTGCAG 1 cut(s) 377
BspOI GCTAGC 1 cut(s) 65
BspPI GGATC 4 cut(s) 163, 353, 366, 821
BspT107I GGYRCC 1 cut(s) 92
BspTI CTTAAG 1 cut(s) 287
BspTNI GGTCTC 2 cut(s) 980, 1022
BsrI ACTGG 3 cut(s) 368, 816, 893
BssECI CCNNGG 4 cut(s) 427, 754, 755, 820
BssMI GATC 6 cut(s) 168, 190, 358, 642, 739, 826
BssNAI GTATAC 1 cut(s) 35
BssT1I CCWWGG 2 cut(s) 427, 820
Bst1107I GTATAC 1 cut(s) 35
Bst2UI CCWGG 3 cut(s) 315, 756, 860
Bst4CI ACNGT 1 cut(s) 255
Bst6I CTCTTC 2 cut(s) 132, 447
BstAFI CTTAAG 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 63, 151
BstDEI CTNAG 4 cut(s) 611, 653, 666, 1059
BstDSI CCRYGG 1 cut(s) 820
BstEII GGTNACC 1 cut(s) 814
BstENI CCTNNNNNAGG 1 cut(s) 43
BstF5I GGATG 3 cut(s) 107, 588, 705
BstFNI CGCG 1 cut(s) 519
BstKTI GATC 6 cut(s) 171, 193, 361, 645, 742, 829
BstMAI GTCTC 3 cut(s) 772, 980, 1022
BstMBI GATC 6 cut(s) 168, 190, 358, 642, 739, 826
BstMWI GCNNNNNNNGC 2 cut(s) 612, 918
BstNI CCWGG 3 cut(s) 315, 756, 860
BstPAI GACNNNNGTC 1 cut(s) 533
BstPI GGTNACC 1 cut(s) 814
BstSCI CCNGG 3 cut(s) 313, 754, 858
BstSFI CTRYAG 1 cut(s) 373
BstUI CGCG 1 cut(s) 519
BstX2I RGATCY 3 cut(s) 168, 358, 739
BstXI CCANNNNNNTGG 1 cut(s) 719
BstYI RGATCY 3 cut(s) 168, 358, 739
BstZ17I GTATAC 1 cut(s) 35
BsuRI GGCC 2 cut(s) 350, 426
BtgI CCRYGG 1 cut(s) 820
BtsCI GGATG 3 cut(s) 107, 588, 705
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 2 cut(s) 305, 871
Cac8I GCNNGC 2 cut(s) 63, 151
CaiI CAGNNNCTG 1 cut(s) 859
Cfr13I GGNCC 3 cut(s) 20, 269, 424
CseI GACGC 1 cut(s) 508
CviAII CATG 5 cut(s) 185, 352, 421, 821, 914
DdeI CTNAG 4 cut(s) 611, 653, 666, 1059
DpnI GATC 6 cut(s) 170, 192, 360, 644, 741, 828
DpnII GATC 6 cut(s) 168, 190, 358, 642, 739, 826
DraIII CACNNNGTG 1 cut(s) 417
Eam1104I CTCTTC 2 cut(s) 132, 447
EarI CTCTTC 2 cut(s) 132, 447
Eco130I CCWWGG 2 cut(s) 427, 820
Eco24I GRGCYC 2 cut(s) 573, 762
Eco31I GGTCTC 2 cut(s) 980, 1022
Eco32I GATATC 1 cut(s) 208
Eco47I GGWCC 2 cut(s) 20, 269
Eco57I CTGAAG 2 cut(s) 147, 317
Eco91I GGTNACC 1 cut(s) 814
EcoNI CCTNNNNNAGG 1 cut(s) 43
EcoO109I RGGNCCY 2 cut(s) 20, 269
EcoO65I GGTNACC 1 cut(s) 814
EcoRI GAATTC 1 cut(s) 1052
EcoRII CCWGG 3 cut(s) 313, 754, 858
EcoRV GATATC 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 427, 820
EcoT38I GRGCYC 2 cut(s) 573, 762
ErhI CCWWGG 2 cut(s) 427, 820
FaeI CATG 5 cut(s) 188, 355, 424, 824, 917
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 676
FatI CATG 5 cut(s) 184, 351, 420, 820, 913
FauI CCCGC 1 cut(s) 570
FblI GTMKAC 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 732
FokI GGATG 3 cut(s) 114, 575, 692
FriOI GRGCYC 2 cut(s) 573, 762
Fsp4HI GCNGC 1 cut(s) 732
FspBI CTAG 5 cut(s) 62, 428, 956, 998, 1040
GluI GCNGC 1 cut(s) 732
HaeIII GGCC 2 cut(s) 350, 426
HapII CCGG 2 cut(s) 260, 627
HgaI GACGC 1 cut(s) 508
Hin1II CATG 5 cut(s) 188, 355, 424, 824, 917
HinfI GANTC 4 cut(s) 483, 529, 664, 723
HpaII CCGG 2 cut(s) 260, 627
HphI GGTGA 5 cut(s) 155, 243, 695, 718, 808
Hpy166II GTNNAC 2 cut(s) 35, 251
Hpy188III TCNNGA 6 cut(s) 71, 172, 194, 965, 1007, 1049
Hpy8I GTNNAC 2 cut(s) 35, 251
Hpy99I CGWCG 2 cut(s) 524, 797
HpyAV CCTTC 6 cut(s) 171, 260, 681, 865, 962, 1004
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 6 cut(s) 107, 328, 375, 420, 508, 921
HpyF10VI GCNNNNNNNGC 2 cut(s) 612, 918
HpyF3I CTNAG 4 cut(s) 611, 653, 666, 1059
Hsp92II CATG 5 cut(s) 188, 355, 424, 824, 917
Kzo9I GATC 6 cut(s) 168, 190, 358, 642, 739, 826
LmnI GCTCC 1 cut(s) 765
LweI GCATC 2 cut(s) 136, 517
MaeI CTAG 5 cut(s) 62, 428, 956, 998, 1040
MaeIII GTNAC 5 cut(s) 255, 317, 526, 535, 814
MalI GATC 6 cut(s) 170, 192, 360, 644, 741, 828
MboI GATC 6 cut(s) 168, 190, 358, 642, 739, 826
MboII GAAGA 6 cut(s) 149, 202, 275, 464, 698, 785
MfeI CAATTG 1 cut(s) 132
MflI RGATCY 3 cut(s) 168, 358, 739
MhlI GDGCHC 4 cut(s) 469, 573, 617, 762
MluI ACGCGT 1 cut(s) 517
MlyI GAGTC 3 cut(s) 523, 658, 717
MmeI TCCRAC 2 cut(s) 336, 880
MnlI CCTC 8 cut(s) 39, 133, 239, 282, 557, 602, 719, 774
MseI TTAA 2 cut(s) 281, 288
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 2 cut(s) 260, 627
MspR9I CCNGG 3 cut(s) 315, 756, 860
MunI CAATTG 1 cut(s) 132
MvaI CCWGG 3 cut(s) 315, 756, 860
MvnI CGCG 1 cut(s) 519
MwoI GCNNNNNNNGC 2 cut(s) 612, 918
NcoI CCATGG 1 cut(s) 820
NdeII GATC 6 cut(s) 168, 190, 358, 642, 739, 826
NheI GCTAGC 1 cut(s) 61
NlaIII CATG 5 cut(s) 188, 355, 424, 824, 917
NlaIV GGNNCC 5 cut(s) 94, 360, 631, 761, 876
NmuCI GTSAC 4 cut(s) 317, 526, 535, 814
PasI CCCWGGG 1 cut(s) 755
PfeI GAWTC 1 cut(s) 483
PkrI GCNGC 1 cut(s) 733
PleI GAGTC 3 cut(s) 523, 658, 717
PpsI GAGTC 3 cut(s) 523, 658, 717
PpuMI RGGWCCY 2 cut(s) 20, 269
PshAI GACNNNNGTC 1 cut(s) 533
Psp5II RGGWCCY 2 cut(s) 20, 269
Psp6I CCWGG 3 cut(s) 313, 754, 858
PspEI GGTNACC 1 cut(s) 814
PspGI CCWGG 3 cut(s) 313, 754, 858
PspN4I GGNNCC 5 cut(s) 94, 360, 631, 761, 876
PspPI GGNCC 3 cut(s) 20, 269, 424
PspPPI RGGWCCY 2 cut(s) 20, 269
PstI CTGCAG 1 cut(s) 377
PstNI CAGNNNCTG 1 cut(s) 859
PsuI RGATCY 3 cut(s) 168, 358, 739
SaqAI TTAA 2 cut(s) 281, 288
SatI GCNGC 1 cut(s) 732
Sau3AI GATC 6 cut(s) 168, 190, 358, 642, 739, 826
Sau96I GGNCC 3 cut(s) 20, 269, 424
SchI GAGTC 3 cut(s) 523, 658, 717
ScrFI CCNGG 3 cut(s) 315, 756, 860
SduI GDGCHC 4 cut(s) 469, 573, 617, 762
SetI ASST 9 cut(s) 25, 67, 240, 250, 274, 281, 388, 498, 880
SfaNI GCATC 2 cut(s) 136, 517
SfcI CTRYAG 1 cut(s) 373
SinI GGWCC 2 cut(s) 20, 269
SmlI CTYRAG 3 cut(s) 287, 344, 566
SmoI CTYRAG 3 cut(s) 287, 344, 566
SsiI CCGC 6 cut(s) 543, 563, 657, 729, 732, 836
SspMI CTAG 5 cut(s) 62, 428, 956, 998, 1040
StyD4I CCNGG 3 cut(s) 313, 754, 858
StyI CCWWGG 2 cut(s) 427, 820
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 554, 849
TauI GCSGC 1 cut(s) 734
TfiI GAWTC 1 cut(s) 483
Tru1I TTAA 2 cut(s) 281, 288
Tru9I TTAA 2 cut(s) 281, 288
TscAI CASTG 2 cut(s) 312, 871
TseFI GTSAC 4 cut(s) 317, 526, 535, 814
Tsp45I GTSAC 4 cut(s) 317, 526, 535, 814
TspDTI ATGAA 1 cut(s) 694
TspRI CASTG 2 cut(s) 312, 871
Vha464I CTTAAG 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 20, 269
XagI CCTNNNNNAGG 1 cut(s) 43
XapI RAATTY 5 cut(s) 13, 934, 976, 1018, 1052
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
XmaJI CCTAGG 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 34
XspI CTAG 5 cut(s) 62, 428, 956, 998, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.