Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006958

Physical Location & Seq

Genomic Coordinates Reverse (-)

44392863 .. 44395578

Gene Structure 2716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG308900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCCTTCAGAGATCCTGAATGAGAAACATGACGATCTTGACAAGGCTGATATCTTCTCATTGGGAGTTGCTATGTATGAGCTTATTAGAGGTTCACTGTTACCAGAAGAAGGACCTCAAACCTTAAATCTTAAGAAAGGAAAATTGCCACTGCTTCCTGGTCACTCCTTGCAACTTCAGAACTTGCTCAAGGCCATGTTGGATCCAAATCCAGACTGCAGACCATCAGCTAAAGAGTTGGTTGAAAATCTAATGTTCCACAGGGTGCTAAAAAATGCATGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007050 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022402 GO:0031570 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

95

Amino Acids

10.71

Weight (kDa)

5.54

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 83	2.1e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006958)

Species	Orthologous Gene IDs
malus_domestica	MD11G1302700.v1.1
rosa_chinensis	RchiOBHm_Chr5g0045701 RchiOBHm_Chr5g0045731 RchiOBHm_Chr5g0045951 RchiOBHm_Chr5g0046271 RchiOBHm_Chr5g0046501 RchiOBHm_Chr5g0046521
rosa_multiflora	Rmu_sc0001035.1_g000079 Rmu_sc0003628.1_g000028
rosa_roxburghii	Rroxscaffold_1G00035460
rosa_rugosa	Rorug05G0224300
rosa_samantha	Rh5AG305900 Rh5AG306000 Rh5AG307000 Rh5AG307300 Rh5AG308200 Rh5AG308300 Rh5AG308500 Rh5AG308600 Rh5AG308700 Rh5AG308900
rosa_wichuraiana	Rw0G021490 Rw0G021570 Rw5G028580 Rw5G028770 Rw5G028870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	7, 197, 210
AcuI	CTGAAG	1 cut(s)	161
AdeI	CACNNNGTG	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	110
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	2 cut(s)	82, 230
AluI	AGCT	2 cut(s)	82, 230
AlwI	GGATC	3 cut(s)	7, 197, 210
AoxI	GGCC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	202
BccI	CCATC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	286
BfmI	CTRYAG	1 cut(s)	217
BfrI	CTTAAG	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	159
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	110
BsnI	GGCC	1 cut(s)	194
Bsp143I	GATC	3 cut(s)	12, 34, 202
BspANI	GGCC	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	221
BspPI	GGATC	3 cut(s)	7, 197, 210
BspTI	CTTAAG	1 cut(s)	131
BssMI	GATC	3 cut(s)	12, 34, 202
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	131
BstKTI	GATC	3 cut(s)	15, 37, 205
BstMBI	GATC	3 cut(s)	12, 34, 202
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	12, 202
BstYI	RGATCY	2 cut(s)	12, 202
BsuRI	GGCC	1 cut(s)	194
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	2 cut(s)	95, 149
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	3 cut(s)	29, 196, 279
CviJI	RGCY	4 cut(s)	47, 82, 194, 230
CviKI_1	RGCY	4 cut(s)	47, 82, 194, 230
DpnI	GATC	3 cut(s)	14, 36, 204
DpnII	GATC	3 cut(s)	12, 34, 202
DraIII	CACNNNGTG	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	52
EcoT22I	ATGCAT	1 cut(s)	280
FaeI	CATG	3 cut(s)	32, 199, 282
FaiI	YATR	5 cut(s)	30, 74, 78, 197, 280
FatI	CATG	3 cut(s)	28, 195, 278
FspBI	CTAG	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	32, 199, 282
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	2 cut(s)	10, 180
Hpy188III	TCNNGA	3 cut(s)	16, 38, 212
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	15, 104
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	172, 219, 278
Hsp92II	CATG	3 cut(s)	32, 199, 282
Kzo9I	GATC	3 cut(s)	12, 34, 202
LpnPI	CCDG	6 cut(s)	29, 117, 144, 171, 225, 247
MaeI	CTAG	1 cut(s)	286
MaeIII	GTNAC	2 cut(s)	99, 161
MalI	GATC	3 cut(s)	14, 36, 204
MboI	GATC	3 cut(s)	12, 34, 202
MboII	GAAGA	2 cut(s)	46, 119
MflI	RGATCY	2 cut(s)	12, 202
MluCI	AATT	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	2 cut(s)	83, 126
Mph1103I	ATGCAT	1 cut(s)	280
MseI	TTAA	2 cut(s)	125, 132
MspCI	CTTAAG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
NdeII	GATC	3 cut(s)	12, 34, 202
NlaIII	CATG	3 cut(s)	32, 199, 282
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	161
NsiI	ATGCAT	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	113
PspPPI	RGGWCCY	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	221
PsuI	RGATCY	2 cut(s)	12, 202
SaqAI	TTAA	2 cut(s)	125, 132
Sau3AI	GATC	3 cut(s)	12, 34, 202
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	5 cut(s)	84, 94, 118, 125, 232
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	131, 188
SmoI	CTYRAG	2 cut(s)	131, 188
Sse9I	AATT	1 cut(s)	143
SspMI	CTAG	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	99
TasI	AATT	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	125, 132
Tru9I	TTAA	2 cut(s)	125, 132
TscAI	CASTG	2 cut(s)	102, 156
TseFI	GTSAC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	161
TspRI	CASTG	2 cut(s)	102, 156
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	113
XspI	CTAG	1 cut(s)	286
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.