Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006958

Physical Location & Seq

Genomic Coordinates Reverse (-)

44360687 .. 44381846

Gene Structure 21160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG308700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTAAGGACCGACCGCAACCTGTTGAGGGGTGTACGATTCCGAGTCACTAACCAAGAGGGATTTGGGGACGTTGAAAATGGAGACAGGGATTTCACTATCATCGTCGAGCTCTTCCTCTACAGTTTTTCGGATTTGAATCACCCATTGATCCTCACTGAAGTTGGAACTGGATTTAAAGATATTCATGGGAGGATTGGCAAAGAACAAGCGGTTCTTTGCTTTGCTCAGCTCACTGGCATTGGCACGATATCGGCATATTGCTTTTGCTCCAGTCTGGCAATGAGAATGAGAAGAACATGTGTGCTAAATCCTGAAGATCTTTGTGGTATATATGGATCAAATTGCTCCCAATGGATTATTGCAATGGAGGGTGCCTTTGGATGTGCAACACTACTTGATAAAAGCCTACCAATTGAAGAGGGTGATGCTCGCTATATGCCTTCAGAGATCCTGAATGAGAAACGTGACGATCTTGACAAGGCTGATATCTTCTCATTGGGAGTTGCTATGTATGAGCCTATTAGAGGTTCACCGTTACCGGAAGAAGGACCTCAAACCTTAAATCTTAAGAAAGGAAAATTGCCTCTGCTTCCTGGTCACTCCTTGCAACTTCAGAACTTGCTCAAGGCCATGTTGGATCCAAATCCAGTCTGCAGACCATCAGCTAAAGAGTTGGTTGAAAATCTAATGTTCCACAGGGTGCTAAAAAATGCATGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007050 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022402 GO:0031570 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 map04110

Pfam Domains

Protein Families

Pkinase

Protein Analysis

241

Amino Acids

26.88

Weight (kDa)

5.65

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	127 - 229	2.2e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006958)

Species	Orthologous Gene IDs
malus_domestica	MD11G1302700.v1.1
rosa_chinensis	RchiOBHm_Chr5g0045701 RchiOBHm_Chr5g0045731 RchiOBHm_Chr5g0045951 RchiOBHm_Chr5g0046271 RchiOBHm_Chr5g0046501 RchiOBHm_Chr5g0046521
rosa_multiflora	Rmu_sc0001035.1_g000079 Rmu_sc0003628.1_g000028
rosa_roxburghii	Rroxscaffold_1G00035460
rosa_rugosa	Rorug05G0224300
rosa_samantha	Rh5AG305900 Rh5AG306000 Rh5AG307000 Rh5AG307300 Rh5AG308200 Rh5AG308300 Rh5AG308500 Rh5AG308600 Rh5AG308700 Rh5AG308900
rosa_wichuraiana	Rw0G021490 Rw0G021570 Rw5G028580 Rw5G028770 Rw5G028870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	374
AciI	CCGC	2 cut(s)	16, 212
AclWI	GGATC	5 cut(s)	145, 346, 445, 635, 648
AcuI	CTGAAG	4 cut(s)	180, 336, 429, 599
AdeI	CACNNNGTG	1 cut(s)	703
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	3 cut(s)	28, 527, 548
AflII	CTTAAG	1 cut(s)	569
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	4 cut(s)	77, 139, 419, 683
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	3 cut(s)	112, 232, 668
AluI	AGCT	3 cut(s)	112, 232, 668
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	5 cut(s)	145, 346, 445, 635, 648
AoxI	GGCC	2 cut(s)	630, 720
AspS9I	GGNCC	3 cut(s)	9, 551, 720
AsuHPI	GGTGA	3 cut(s)	134, 437, 525
AvaII	GGWCC	2 cut(s)	9, 551
BamHI	GGATCC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BccI	CCATC	1 cut(s)	670
BciT130I	CCWGG	1 cut(s)	597
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	724
BfmI	CTRYAG	2 cut(s)	121, 655
BfrI	CTTAAG	1 cut(s)	569
BglII	AGATCT	1 cut(s)	319
BlpI	GCTNAGC	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	597
Bme18I	GGWCC	2 cut(s)	9, 551
BmgT120I	GGNCC	3 cut(s)	9, 551, 720
BmiI	GGNNCC	2 cut(s)	376, 642
BmrFI	CCNGG	1 cut(s)	597
BmsI	GCATC	1 cut(s)	418
BpmI	CTGGAG	1 cut(s)	256
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	611
BsaBI	GATNNNNATC	2 cut(s)	138, 645
BsaWI	WCCGGW	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 527, 548
Bse1I	ACTGG	4 cut(s)	175, 241, 273, 650
Bse3DI	GCAATG	2 cut(s)	288, 372
Bse8I	GATNNNNATC	2 cut(s)	138, 645
BseBI	CCWGG	1 cut(s)	597
BseGI	GGATG	1 cut(s)	389
BseJI	GATNNNNATC	2 cut(s)	138, 645
BseLI	CCNNNNNNNGG	3 cut(s)	28, 527, 548
BseMI	GCAATG	2 cut(s)	288, 372
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	4 cut(s)	175, 241, 273, 650
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	2 cut(s)	632, 722
BshNI	GGYRCC	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	28, 527, 548
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	632, 722
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	6 cut(s)	150, 319, 338, 450, 472, 640
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	2 cut(s)	16, 212
BspANI	GGCC	2 cut(s)	632, 722
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	376, 642
BspMAI	CTGCAG	1 cut(s)	659
BspPI	GGATC	5 cut(s)	145, 346, 445, 635, 648
BspQI	GCTCTTC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	374
BspTI	CTTAAG	1 cut(s)	569
BsrDI	GCAATG	2 cut(s)	288, 372
BsrI	ACTGG	4 cut(s)	175, 241, 273, 650
BssMI	GATC	6 cut(s)	150, 319, 338, 450, 472, 640
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	2 cut(s)	125, 537
Bst6I	CTCTTC	2 cut(s)	119, 414
BstAFI	CTTAAG	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	1 cut(s)	228
BstENI	CCTNNNNNAGG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	389
BstKTI	GATC	6 cut(s)	153, 322, 341, 453, 475, 643
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	6 cut(s)	150, 319, 338, 450, 472, 640
BstMCI	CGRYCG	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	595
BstSFI	CTRYAG	2 cut(s)	121, 655
BstX2I	RGATCY	3 cut(s)	319, 450, 640
BstYI	RGATCY	3 cut(s)	319, 450, 640
BsuRI	GGCC	2 cut(s)	632, 722
BtsCI	GGATG	1 cut(s)	389
BtsIMutI	CAGTG	2 cut(s)	156, 234
Cac8I	GCNNGC	1 cut(s)	433
Cfr13I	GGNCC	3 cut(s)	9, 551, 720
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	4 cut(s)	188, 300, 634, 717
CviJI	RGCY	8 cut(s)	112, 232, 408, 485, 520, 632, 668, 722
CviKI_1	RGCY	8 cut(s)	112, 232, 408, 485, 520, 632, 668, 722
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	6 cut(s)	152, 321, 340, 452, 474, 642
DpnII	GATC	6 cut(s)	150, 319, 338, 450, 472, 640
DraI	TTTAAA	1 cut(s)	178
DraIII	CACNNNGTG	1 cut(s)	703
Eam1104I	CTCTTC	2 cut(s)	119, 414
EarI	CTCTTC	2 cut(s)	119, 414
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco32I	GATATC	2 cut(s)	252, 490
Eco47I	GGWCC	2 cut(s)	9, 551
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	4 cut(s)	180, 336, 429, 599
EcoICRI	GAGCTC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	1 cut(s)	525
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	595
EcoRV	GATATC	2 cut(s)	252, 490
EcoT22I	ATGCAT	1 cut(s)	718
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	4 cut(s)	191, 303, 637, 720
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	4 cut(s)	187, 299, 633, 716
FokI	GGATG	1 cut(s)	396
FriOI	GRGCYC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	724
GsuI	CTGGAG	1 cut(s)	256
HaeIII	GGCC	2 cut(s)	632, 722
HapII	CCGG	1 cut(s)	542
Hin1II	CATG	4 cut(s)	191, 303, 637, 720
HinfI	GANTC	3 cut(s)	39, 45, 139
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	3 cut(s)	134, 437, 525
Hpy166II	GTNNAC	2 cut(s)	35, 533
Hpy188I	TCNGA	4 cut(s)	44, 133, 448, 618
Hpy188III	TCNNGA	3 cut(s)	314, 454, 476
Hpy8I	GTNNAC	2 cut(s)	35, 533
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	453, 542
HpyCH4III	ACNGT	2 cut(s)	125, 537
HpyCH4IV	ACGT	2 cut(s)	72, 466
HpyCH4V	TGCA	5 cut(s)	365, 389, 610, 657, 716
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	2 cut(s)	72, 466
Hsp92II	CATG	4 cut(s)	191, 303, 637, 720
Kzo9I	GATC	6 cut(s)	150, 319, 338, 450, 472, 640
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	2 cut(s)	275, 353
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	1 cut(s)	724
MaeII	ACGT	2 cut(s)	72, 466
MaeIII	GTNAC	4 cut(s)	46, 467, 537, 599
MalI	GATC	6 cut(s)	152, 321, 340, 452, 474, 642
MboI	GATC	6 cut(s)	150, 319, 338, 450, 472, 640
MboII	GAAGA	6 cut(s)	106, 306, 329, 431, 484, 557
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	3 cut(s)	319, 450, 640
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	3 cut(s)	343, 414, 581
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	2 cut(s)	145, 618
Mph1103I	ATGCAT	1 cut(s)	718
MseI	TTAA	3 cut(s)	177, 563, 570
MspCI	CTTAAG	1 cut(s)	569
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	597
MunI	CAATTG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	597
NdeII	GATC	6 cut(s)	150, 319, 338, 450, 472, 640
NlaIII	CATG	4 cut(s)	191, 303, 637, 720
NlaIV	GGNNCC	2 cut(s)	376, 642
NmuCI	GTSAC	3 cut(s)	46, 467, 599
NsiI	ATGCAT	1 cut(s)	718
NspI	RCATGY	1 cut(s)	303
PciI	ACATGT	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	39, 139
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	2 cut(s)	376, 642
PspPI	GGNCC	3 cut(s)	9, 551, 720
PspPPI	RGGWCCY	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	659
PsuI	RGATCY	3 cut(s)	319, 450, 640
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	3 cut(s)	177, 563, 570
Sau3AI	GATC	6 cut(s)	150, 319, 338, 450, 472, 640
Sau96I	GGNCC	3 cut(s)	9, 551, 720
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	9 cut(s)	24, 75, 114, 234, 469, 532, 556, 563, 670
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	2 cut(s)	121, 655
SinI	GGWCC	2 cut(s)	9, 551
SmlI	CTYRAG	2 cut(s)	569, 626
SmoI	CTYRAG	2 cut(s)	569, 626
Sse9I	AATT	3 cut(s)	343, 414, 581
SsiI	CCGC	2 cut(s)	16, 212
SspMI	CTAG	1 cut(s)	724
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	595
TaaI	ACNGT	2 cut(s)	125, 537
TaiI	ACGT	2 cut(s)	75, 469
TaqI	TCGA	1 cut(s)	108
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	3 cut(s)	343, 414, 581
TfiI	GAWTC	2 cut(s)	39, 139
Tru1I	TTAA	3 cut(s)	177, 563, 570
Tru9I	TTAA	3 cut(s)	177, 563, 570
TscAI	CASTG	2 cut(s)	163, 241
TseFI	GTSAC	3 cut(s)	46, 467, 599
Tsp45I	GTSAC	3 cut(s)	46, 467, 599
TspDTI	ATGAA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	163, 241
Vha464I	CTTAAG	1 cut(s)	569
VpaK11BI	GGWCC	2 cut(s)	9, 551
XagI	CCTNNNNNAGG	1 cut(s)	525
XceI	RCATGY	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	1 cut(s)	724
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.