MD12G1215600.v1.1

protease Do-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
29383167 .. 29386474
3308 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1215600.v1.1.491

Sequence Viewer

Length: 1206 bp
ATGAACGATTTTCTGAGAAAATTTTCAACTCGGAACCGGATTGCCGCCATTGCCGCCGCTGCAGGGTCGGCTTTTTTGTACACCAACGGCAGCAGAAACTCCGACTATACGGCTTCAGTGTCAATCCCTGCGCCATTGCCCGAATCGCTGCTGCTTCCATGGCAAACGGAGCTATTGGCTCCTCTATTTTCTGTGGGAAGTAGTCCAGTTCCACCATCAGATATAAGGAAGGATATTTATGGTGTTTCCCCATCTGAAGAGACCCCAAAGCCATGTTCTGGATGTTTGGGCAGAGATTCTTTCGCAAAGGCGGCTGCAAAGGTCGGTCCTGCTGTTGTCAATATCTCTGCTCCACAGGGTGCATATGGGATCACTCCGGGAAAGAGTATAGGCTCTGGAACTATTATTAACGAGGACGGTACAATTTTAACATGTGCTCATACTGTAGTTGATTTTTATGGCCTGAGAGCTTCATCAAAAGGGAAGGTTCATATCACTTTGCAAGATGGTAGAACATTTGAGGGTACCGTGGTCAATGCAGATTTACAATCCGATGTGGCTATAGTAAAGATCAATTCTAAAACCCCACTGCCAACAGCAAAGCTCGGCAGTTCGCGTAAACTTCAACCTGGGGATTGGGTGATAGCTGTTGGTTGTCCACTTTCACTTCAGAATACTGTCACAGCTGGTATTATAAGAGAGTATTTACAGACAGATTGCGCAATCAATCCGGGCAATTCTGGGGGGCCTTTGGTGAATATTGACGGAGAAGTGATTGGTGTTAATATTATGAAAGTACTTGCTGCTGATGGATTGAGTTTTGCCTTCCCAATCGATTCAGTCACCAAAATCATAGAGCACTTCAAGAAAAGCGGGAGGGTTGTTCGGCCTTGGGTTGGACTAAAGATGATCGATCTCAATGAGATGATCATCAATCAGCTTAAAGAAAGAGATCCTACATTCCCAAATGTGAAGAAAGGCATTCTAGTGCCTATGGTAACTCCTGGATCGCCTGCTGAACGAGCTGGGTTCAGTCCTGGTGATGTTGTTATTGAATTTGATGGAAACGCTGTTGAGAGCATCAAGGAGATCATTGAAATAATGGGAGACCGAGTTGGGGTGCCCATCAAGGCAGTCGTTATACGAGCGAGAGACGAGATAGTGACTTTAACAGTGATCCCAGAGGAGTCCAATTCAGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

402

Amino Acids

42.48

Weight (kDa)

6.04

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trypsin PF00089 112 - 284 3e-12 Trypsin
Trypsin_2 PF13365 131 - 261 3.8e-29 Trypsin-like peptidase domain
PDZ_2 PF13180 321 - 382 7.2e-08 PDZ domain
PDZ_6 PF17820 333 - 368 2.7e-09 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 695
Acc16I TGCGCA 1 cut(s) 721
Acc65I GGTACC 1 cut(s) 524
AccB1I GGYRCC 2 cut(s) 524, 1120
AccB7I CCANNNNNTGG 1 cut(s) 278
AccII CGCG 1 cut(s) 616
AciI CCGC 5 cut(s) 45, 54, 57, 311, 873
AclWI GGATC 4 cut(s) 377, 947, 1015, 1171
AcsI RAATTY 2 cut(s) 20, 1055
AcuI CTGAAG 3 cut(s) 99, 276, 653
AdeI CACNNNGTG 1 cut(s) 359
AfaI GTAC 4 cut(s) 80, 421, 526, 798
AfiI CCNNNNNNNGG 4 cut(s) 63, 278, 896, 1117
AflIII ACRYGT 1 cut(s) 431
AgsI TTSAA 5 cut(s) 27, 626, 865, 1055, 1097
AjnI CCWGG 3 cut(s) 628, 1003, 1036
AjuI GAANNNNNNNTTGG 2 cut(s) 259, 291
AluBI AGCT 7 cut(s) 172, 470, 604, 647, 686, 940, 1025
AluI AGCT 7 cut(s) 172, 470, 604, 647, 686, 940, 1025
Alw21I GWGCWC 2 cut(s) 439, 861
Alw26I GTCTC 3 cut(s) 254, 1101, 1146
AlwI GGATC 4 cut(s) 377, 947, 1015, 1171
AoxI GGCC 3 cut(s) 460, 746, 887
ApeKI GCWGC 6 cut(s) 59, 90, 148, 151, 314, 803
ApoI RAATTY 2 cut(s) 20, 1055
Asp700I GAANNNNTTC 1 cut(s) 22
Asp718I GGTACC 1 cut(s) 524
AspLEI GCGC 2 cut(s) 133, 722
AspS9I GGNCC 2 cut(s) 326, 746
AsuC2I CCSGG 2 cut(s) 378, 732
AsuHPI GGTGA 4 cut(s) 652, 766, 835, 1052
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 1125
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
BanI GGYRCC 2 cut(s) 524, 1120
Bbv12I GWGCWC 2 cut(s) 439, 861
BbvI GCAGC 6 cut(s) 46, 102, 135, 138, 301, 790
BccI CCATC 6 cut(s) 223, 259, 500, 803, 1055, 1133
BceAI ACGGC 2 cut(s) 103, 126
BciT130I CCWGG 3 cut(s) 630, 1005, 1038
BclI TGATCA 1 cut(s) 927
BcnI CCSGG 2 cut(s) 378, 732
BcoDI GTCTC 3 cut(s) 254, 1101, 1146
BfaI CTAG 1 cut(s) 986
BfmI CTRYAG 3 cut(s) 60, 444, 561
BmcAI AGTACT 1 cut(s) 798
Bme1390I CCNGG 5 cut(s) 378, 630, 732, 1005, 1038
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 326, 746
BmiI GGNNCC 5 cut(s) 35, 180, 526, 747, 1122
BmrFI CCNGG 5 cut(s) 378, 630, 732, 1005, 1038
BmsI GCATC 1 cut(s) 1089
BpuMI CCSGG 2 cut(s) 378, 732
Bsa29I ATCGAT 2 cut(s) 834, 912
BsaBI GATNNNNATC 1 cut(s) 929
BsaI GGTCTC 2 cut(s) 254, 1101
BsaJI CCNNGG 4 cut(s) 158, 528, 629, 890
BsaWI WCCGGW 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 1098, 1128
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 278, 896, 1117
Bse1I ACTGG 1 cut(s) 206
Bse3DI GCAATG 2 cut(s) 48, 134
Bse8I GATNNNNATC 1 cut(s) 929
BseBI CCWGG 3 cut(s) 630, 1005, 1038
BseCI ATCGAT 2 cut(s) 834, 912
BseDI CCNNGG 4 cut(s) 158, 528, 629, 890
BseGI GGATG 1 cut(s) 287
BseJI GATNNNNATC 1 cut(s) 929
BseLI CCNNNNNNNGG 4 cut(s) 63, 278, 896, 1117
BseMI GCAATG 2 cut(s) 48, 134
BseMII CTCAG 2 cut(s) 5, 455
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 2 cut(s) 171, 1199
BseSI GKGCMC 1 cut(s) 1125
BseXI GCAGC 6 cut(s) 46, 102, 135, 138, 301, 790
BseYI CCCAGC 1 cut(s) 1025
Bsh1236I CGCG 1 cut(s) 616
BshFI GGCC 3 cut(s) 462, 748, 889
BshNI GGYRCC 2 cut(s) 524, 1120
BshVI ATCGAT 2 cut(s) 834, 912
BsiHKAI GWGCWC 2 cut(s) 439, 861
BsiSI CCGG 3 cut(s) 37, 377, 731
BslI CCNNNNNNNGG 4 cut(s) 63, 278, 896, 1117
BsmAI GTCTC 3 cut(s) 254, 1101, 1146
BsmBI CGTCTC 1 cut(s) 1146
BsmI GAATGC 1 cut(s) 981
BsnI GGCC 3 cut(s) 462, 748, 889
Bso31I GGTCTC 2 cut(s) 254, 1101
Bsp1286I GDGCHC 3 cut(s) 439, 861, 1125
Bsp1407I TGTACA 1 cut(s) 78
Bsp143I GATC 9 cut(s) 369, 570, 909, 913, 927, 952, 1007, 1089, 1176
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 5 cut(s) 45, 54, 57, 311, 873
BspANI GGCC 3 cut(s) 462, 748, 889
BspCNI CTCAG 2 cut(s) 6, 456
BspDI ATCGAT 2 cut(s) 834, 912
BspFNI CGCG 1 cut(s) 616
BspLI GGNNCC 5 cut(s) 35, 180, 526, 747, 1122
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 4 cut(s) 377, 947, 1015, 1171
BspT107I GGYRCC 2 cut(s) 524, 1120
BspTNI GGTCTC 2 cut(s) 254, 1101
BsrDI GCAATG 2 cut(s) 48, 134
BsrGI TGTACA 1 cut(s) 78
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 4 cut(s) 158, 528, 629, 890
BssMI GATC 9 cut(s) 369, 570, 909, 913, 927, 952, 1007, 1089, 1176
BssT1I CCWWGG 2 cut(s) 158, 890
Bst2UI CCWGG 3 cut(s) 630, 1005, 1038
Bst4CI ACNGT 5 cut(s) 419, 445, 529, 679, 1174
Bst6I CTCTTC 1 cut(s) 252
BstAUI TGTACA 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 1014
BstDEI CTNAG 2 cut(s) 14, 464
BstDSI CCRYGG 2 cut(s) 158, 528
BstF5I GGATG 1 cut(s) 287
BstFNI CGCG 1 cut(s) 616
BstHHI GCGC 2 cut(s) 133, 722
BstKTI GATC 9 cut(s) 372, 573, 912, 916, 930, 955, 1010, 1092, 1179
BstMAI GTCTC 3 cut(s) 254, 1101, 1146
BstMBI GATC 9 cut(s) 369, 570, 909, 913, 927, 952, 1007, 1089, 1176
BstMWI GCNNNNNNNGC 9 cut(s) 50, 53, 59, 68, 145, 160, 169, 311, 1022
BstNI CCWGG 3 cut(s) 630, 1005, 1038
BstNSI RCATGY 1 cut(s) 435
BstSCI CCNGG 5 cut(s) 376, 628, 730, 1003, 1036
BstSFI CTRYAG 3 cut(s) 60, 444, 561
BstSLI GKGCMC 1 cut(s) 1125
BstUI CGCG 1 cut(s) 616
BstV1I GCAGC 6 cut(s) 46, 102, 135, 138, 301, 790
BstX2I RGATCY 1 cut(s) 952
BstYI RGATCY 1 cut(s) 952
Bsu15I ATCGAT 2 cut(s) 834, 912
BsuRI GGCC 3 cut(s) 462, 748, 889
BsuTUI ATCGAT 2 cut(s) 834, 912
BtgI CCRYGG 2 cut(s) 158, 528
BtsCI GGATG 1 cut(s) 287
BtsI GCAGTG 1 cut(s) 587
BtsIMutI CAGTG 3 cut(s) 123, 587, 1179
Cac8I GCNNGC 1 cut(s) 1014
CfoI GCGC 2 cut(s) 133, 722
Cfr13I GGNCC 2 cut(s) 326, 746
ClaI ATCGAT 2 cut(s) 834, 912
Csp6I GTAC 4 cut(s) 79, 420, 525, 797
CviAII CATG 3 cut(s) 159, 273, 432
CviQI GTAC 4 cut(s) 79, 420, 525, 797
DdeI CTNAG 2 cut(s) 14, 464
DpnI GATC 9 cut(s) 371, 572, 911, 915, 929, 954, 1009, 1091, 1178
DpnII GATC 9 cut(s) 369, 570, 909, 913, 927, 952, 1007, 1089, 1176
DraIII CACNNNGTG 1 cut(s) 359
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 158, 890
Eco31I GGTCTC 2 cut(s) 254, 1101
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 3 cut(s) 99, 276, 653
EcoO109I RGGNCCY 1 cut(s) 746
EcoRII CCWGG 3 cut(s) 628, 1003, 1036
EcoT14I CCWWGG 2 cut(s) 158, 890
ErhI CCWWGG 2 cut(s) 158, 890
Esp3I CGTCTC 1 cut(s) 1146
FaeI CATG 3 cut(s) 162, 276, 435
FatI CATG 3 cut(s) 158, 272, 431
FauI CCCGC 1 cut(s) 866
FauNDI CATATG 1 cut(s) 364
FbaI TGATCA 1 cut(s) 927
FokI GGATG 1 cut(s) 294
FspBI CTAG 1 cut(s) 986
FspI TGCGCA 1 cut(s) 721
GlaI GCGC 2 cut(s) 132, 721
GsaI CCCAGC 1 cut(s) 1029
HaeIII GGCC 3 cut(s) 462, 748, 889
HapII CCGG 3 cut(s) 37, 377, 731
HhaI GCGC 2 cut(s) 133, 722
Hin1II CATG 3 cut(s) 162, 276, 435
Hin6I GCGC 2 cut(s) 131, 720
HinP1I GCGC 2 cut(s) 131, 720
HinfI GANTC 4 cut(s) 143, 296, 836, 1187
HpaII CCGG 3 cut(s) 37, 377, 731
HphI GGTGA 4 cut(s) 652, 766, 835, 1052
Hpy166II GTNNAC 3 cut(s) 81, 620, 659
Hpy188I TCNGA 8 cut(s) 15, 33, 103, 220, 256, 553, 672, 1198
Hpy188III TCNNGA 3 cut(s) 279, 396, 865
Hpy8I GTNNAC 3 cut(s) 81, 620, 659
HpyAV CCTTC 3 cut(s) 223, 478, 835
HpyCH4III ACNGT 5 cut(s) 419, 445, 529, 679, 1174
HpyCH4V TGCA 5 cut(s) 62, 317, 362, 502, 539
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 53, 59, 68, 145, 160, 169, 311, 1022
HpyF3I CTNAG 2 cut(s) 14, 464
Hsp92II CATG 3 cut(s) 162, 276, 435
HspAI GCGC 2 cut(s) 131, 720
KpnI GGTACC 1 cut(s) 528
Ksp22I TGATCA 1 cut(s) 927
Kzo9I GATC 9 cut(s) 369, 570, 909, 913, 927, 952, 1007, 1089, 1176
LmnI GCTCC 3 cut(s) 169, 184, 355
Lsp1109I GCAGC 6 cut(s) 46, 102, 135, 138, 301, 790
LweI GCATC 1 cut(s) 1089
MaeI CTAG 1 cut(s) 986
MaeIII GTNAC 4 cut(s) 679, 841, 997, 1162
MalI GATC 9 cut(s) 371, 572, 911, 915, 929, 954, 1009, 1091, 1178
MboI GATC 9 cut(s) 369, 570, 909, 913, 927, 952, 1007, 1089, 1176
MboII GAAGA 2 cut(s) 269, 985
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 3 cut(s) 439, 861, 1125
MluCI AATT 6 cut(s) 20, 423, 574, 736, 1055, 1192
MlyI GAGTC 1 cut(s) 1196
MmeI TCCRAC 2 cut(s) 126, 877
MnlI CCTC 5 cut(s) 192, 406, 514, 870, 1177
MroXI GAANNNNTTC 1 cut(s) 22
MseI TTAA 5 cut(s) 408, 428, 783, 942, 1169
MslI CAYNNNNRTG 1 cut(s) 986
MspA1I CMGCKG 2 cut(s) 59, 686
MspI CCGG 3 cut(s) 37, 377, 731
MspR9I CCNGG 5 cut(s) 378, 630, 732, 1005, 1038
Mva1269I GAATGC 1 cut(s) 981
MvaI CCWGG 3 cut(s) 630, 1005, 1038
MvnI CGCG 1 cut(s) 616
MwoI GCNNNNNNNGC 9 cut(s) 50, 53, 59, 68, 145, 160, 169, 311, 1022
NciI CCSGG 2 cut(s) 378, 732
NcoI CCATGG 1 cut(s) 158
NdeI CATATG 1 cut(s) 364
NdeII GATC 9 cut(s) 369, 570, 909, 913, 927, 952, 1007, 1089, 1176
NlaIII CATG 3 cut(s) 162, 276, 435
NlaIV GGNNCC 5 cut(s) 35, 180, 526, 747, 1122
NmeAIII GCCGAG 1 cut(s) 585
NmuCI GTSAC 3 cut(s) 679, 841, 1162
NsbI TGCGCA 1 cut(s) 721
NspI RCATGY 1 cut(s) 435
PciI ACATGT 1 cut(s) 431
PctI GAATGC 1 cut(s) 981
PdmI GAANNNNTTC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 143, 296, 836
PflMI CCANNNNNTGG 1 cut(s) 278
PfoI TCCNGGA 2 cut(s) 376, 1003
PleI GAGTC 1 cut(s) 1195
PpsI GAGTC 1 cut(s) 1195
PscI ACATGT 1 cut(s) 431
PsiI TTATAA 1 cut(s) 695
Psp6I CCWGG 3 cut(s) 628, 1003, 1036
PspFI CCCAGC 1 cut(s) 1025
PspGI CCWGG 3 cut(s) 628, 1003, 1036
PspN4I GGNNCC 5 cut(s) 35, 180, 526, 747, 1122
PspPI GGNCC 2 cut(s) 326, 746
PstI CTGCAG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 952
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 4 cut(s) 80, 421, 526, 798
RsaNI GTAC 4 cut(s) 79, 420, 525, 797
RseI CAYNNNNRTG 1 cut(s) 986
SaqAI TTAA 5 cut(s) 408, 428, 783, 942, 1169
Sau3AI GATC 9 cut(s) 369, 570, 909, 913, 927, 952, 1007, 1089, 1176
Sau96I GGNCC 2 cut(s) 326, 746
ScaI AGTACT 1 cut(s) 798
SchI GAGTC 1 cut(s) 1196
ScrFI CCNGG 5 cut(s) 378, 630, 732, 1005, 1038
SduI GDGCHC 3 cut(s) 439, 861, 1125
SfaNI GCATC 1 cut(s) 1089
SfcI CTRYAG 3 cut(s) 60, 444, 561
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 986
Sse9I AATT 6 cut(s) 20, 423, 574, 736, 1055, 1192
SsiI CCGC 5 cut(s) 45, 54, 57, 311, 873
SspI AATATT 2 cut(s) 760, 787
SspMI CTAG 1 cut(s) 986
StyD4I CCNGG 5 cut(s) 376, 628, 730, 1003, 1036
StyI CCWWGG 2 cut(s) 158, 890
TaaI ACNGT 5 cut(s) 419, 445, 529, 679, 1174
TaqI TCGA 2 cut(s) 834, 912
TaqII GACCGA 2 cut(s) 314, 1125
TasI AATT 6 cut(s) 20, 423, 574, 736, 1055, 1192
TatI WGTACW 2 cut(s) 78, 796
TauI GCSGC 4 cut(s) 47, 56, 59, 314
TfiI GAWTC 3 cut(s) 143, 296, 836
Tru1I TTAA 5 cut(s) 408, 428, 783, 942, 1169
Tru9I TTAA 5 cut(s) 408, 428, 783, 942, 1169
TscAI CASTG 3 cut(s) 123, 594, 1179
TseFI GTSAC 3 cut(s) 679, 841, 1162
TseI GCWGC 6 cut(s) 59, 90, 148, 151, 314, 803
Tsp45I GTSAC 3 cut(s) 679, 841, 1162
TspDTI ATGAA 4 cut(s) 17, 462, 479, 806
TspGWI ACGGA 2 cut(s) 182, 780
TspRI CASTG 3 cut(s) 123, 594, 1179
Van91I CCANNNNNTGG 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 2 cut(s) 20, 1055
XceI RCATGY 1 cut(s) 435
XmnI GAANNNNTTC 1 cut(s) 22
XspI CTAG 1 cut(s) 986
ZrmI AGTACT 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.