Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005022

Physical Location & Seq

Genomic Coordinates Reverse (-)

4449401 .. 4450042

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCTTCCAATGCATTGTTTTCGTGATGGTTCGGTTCCTCCACGGGACATAAGGAAAGATGATACTTCTGGTGCCCCTATAGCCGGGGAGAGGCCGGACCGTACTTATGCCAGTGCATTTGCTAAGGGGCCATTTGCCCAATTGTTGACCAGGTTCCGTCCTGGTGACGTTGTCTCCGAATTTGATGGAAAGGATGTTCAAACTGTTAAAGAGATCATTGAAATAGTTGGAGACAGAGTGGGGGAACCCTTGAAGGCTGTTGTAAAAAGAGTGAAAGATGAGCAGGTGATACTGACTGTGAATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04210 ko04214 ko04215 ko05012 map04210 map04214 map04215 map05012

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

102

Amino Acids

11.28

Weight (kDa)

6.57

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27660 AT5G27660
fragaria_vesca	FvH4_6g06410 FvH4_6g06410 FvH4_6g06410 FvH4_6g06410 FvH4_6g06420 FvH4_7g05300
malus_domestica	MD04G1201900.v1.1 MD12G1215600.v1.1
prunus_persica	Prupe.6G322200_v2.0.a1
pyrus_communis	pycom04g17810 pycom12g20150
rosa_chinensis	RchiOBHm_Chr3g0455481
rosa_laevigata	RLG00000025355 RLG00000025356
rosa_multiflora	Rmu_sc0010428.1_g000005 Rmu_sc0016199.1_g000004
rosa_roxburghii	Rroxscaffold_6G00424220
rosa_rugosa	Rorug03G0007900
rosa_samantha	Rh3AG067400 Rh3AG067500 Rh3BG069700 Rh3BG069800 Rh3CG068200 Rh3CG068300 Rh3DG069800 Rh3DG069900
rosa_wichuraiana	Rw3G005340 Rw3G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	274
Acc36I	ACCTGC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	179
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	2 cut(s)	83, 90
AgsI	TTSAA	3 cut(s)	200, 221, 253
AjnI	CCWGG	2 cut(s)	149, 160
AloI	GAACNNNNNNTCC	2 cut(s)	180, 212
Alw26I	GTCTC	2 cut(s)	178, 225
AoxI	GGCC	2 cut(s)	92, 128
ApoI	RAATTY	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	97, 128
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	2 cut(s)	176, 298
AvaII	GGWCC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	71
BccI	CCATC	2 cut(s)	20, 179
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	2 cut(s)	151, 162
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	178, 225
BfmI	CTRYAG	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	274
Bme1390I	CCNGG	3 cut(s)	85, 151, 162
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	97, 128
BmiI	GGNNCC	5 cut(s)	36, 73, 129, 155, 246
BmrFI	CCNGG	3 cut(s)	85, 151, 162
Bpu10I	CCTNAGC	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	85
BsaJI	CCNNGG	2 cut(s)	41, 84
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 90
Bse1I	ACTGG	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	151, 162
BseDI	CCNNGG	2 cut(s)	41, 84
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	83, 90
BseNI	ACTGG	1 cut(s)	111
BseSI	GKGCMC	1 cut(s)	76
BshFI	GGCC	2 cut(s)	94, 130
BshNI	GGYRCC	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	84, 95
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	83, 90
BsmAI	GTCTC	2 cut(s)	178, 225
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	94, 130
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	213
BspANI	GGCC	2 cut(s)	94, 130
BspLI	GGNNCC	5 cut(s)	36, 73, 129, 155, 246
BspMI	ACCTGC	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	41, 84
BssMI	GATC	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	151, 162
Bst4CI	ACNGT	3 cut(s)	101, 205, 298
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	2 cut(s)	178, 225
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 80
BstNI	CCWGG	2 cut(s)	151, 162
BstSCI	CCNGG	3 cut(s)	83, 149, 160
BstSFI	CTRYAG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	94, 130
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	97, 128
CpoI	CGGWCCG	1 cut(s)	97
CsiI	ACCWGGT	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	102
CspI	CGGWCCG	1 cut(s)	97
CviJI	RGCY	4 cut(s)	83, 94, 130, 257
CviKI_1	RGCY	4 cut(s)	83, 94, 130, 257
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	97
EcoRII	CCWGG	2 cut(s)	149, 160
EcoT22I	ATGCAT	1 cut(s)	15
FaiI	YATR	3 cut(s)	50, 80, 108
FaqI	GGGAC	1 cut(s)	59
FokI	GGATG	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	94, 130
HapII	CCGG	2 cut(s)	84, 95
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	2 cut(s)	84, 95
HphI	GGTGA	2 cut(s)	176, 298
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	3 cut(s)	101, 205, 298
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	13, 116
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 80
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	213
LpnPI	CCDG	9 cut(s)	54, 97, 108, 124, 136, 147, 163, 174, 269
MabI	ACCWGGT	1 cut(s)	149
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MfeI	CAATTG	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	2 cut(s)	140, 179
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	2 cut(s)	48, 84
Mph1103I	ATGCAT	1 cut(s)	15
MseI	TTAA	1 cut(s)	207
MspI	CCGG	2 cut(s)	84, 95
MspR9I	CCNGG	3 cut(s)	85, 151, 162
MunI	CAATTG	1 cut(s)	140
MvaI	CCWGG	2 cut(s)	151, 162
MwoI	GCNNNNNNNGC	2 cut(s)	10, 80
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	1 cut(s)	213
NlaIV	GGNNCC	5 cut(s)	36, 73, 129, 155, 246
NmuCI	GTSAC	1 cut(s)	164
NsiI	ATGCAT	1 cut(s)	15
PaqCI	CACCTGC	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	301
PflFI	GACNNNGTC	1 cut(s)	170
Psp6I	CCWGG	2 cut(s)	149, 160
PspGI	CCWGG	2 cut(s)	149, 160
PspN4I	GGNNCC	5 cut(s)	36, 73, 129, 155, 246
PspPI	GGNCC	2 cut(s)	97, 128
PsyI	GACNNNGTC	1 cut(s)	170
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
Rsr2I	CGGWCCG	1 cut(s)	97
RsrII	CGGWCCG	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	2 cut(s)	97, 128
ScrFI	CCNGG	3 cut(s)	85, 151, 162
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	3 cut(s)	155, 171, 288
SexAI	ACCWGGT	1 cut(s)	149
SfcI	CTRYAG	1 cut(s)	78
SinI	GGWCC	1 cut(s)	97
Sse9I	AATT	2 cut(s)	140, 179
StyD4I	CCNGG	3 cut(s)	83, 149, 160
TaaI	ACNGT	3 cut(s)	101, 205, 298
TaiI	ACGT	1 cut(s)	171
TasI	AATT	2 cut(s)	140, 179
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	118
Tth111I	GACNNNGTC	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.