Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005022

Physical Location & Seq

Genomic Coordinates Forward (+)

45403110 .. 45404241

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCGAGCGCATTTGCTAAGGTTAGCCCTGCCGTGGTGCATATTCATGCTCCAACTAGGGGTCATTTGCCCAATTGTTGACCAGGTAACTCCTGAGTCACCCGGTGAGCGTGCTGGGTTCCGTCCTGGTGACGTTGTCTCCGAATTTGATGGAAAGAATGTTCAAATTGTTAAAGAGATCATTGAAATAGTTGGAGACAGAGTGGGGGAACCCTTGAAGGTTGTTGTAAAAAGAGAGAAAGATGAGCAGGTGATGCTGACTGTGATCCTAGAGGAGTCATCTCAGCCGGATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04210 ko04214 ko04215 ko05012 map04210 map04214 map04215 map05012

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

98

Amino Acids

10.98

Weight (kDa)

4.8

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDZ_6	PF17820	25 - 78	7.1e-11	PDZ domain
PDZ_2	PF13180	25 - 83	1.5e-08	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27660 AT5G27660
fragaria_vesca	FvH4_6g06410 FvH4_6g06410 FvH4_6g06410 FvH4_6g06410 FvH4_6g06420 FvH4_7g05300
malus_domestica	MD04G1201900.v1.1 MD12G1215600.v1.1
prunus_persica	Prupe.6G322200_v2.0.a1
pyrus_communis	pycom04g17810 pycom12g20150
rosa_chinensis	RchiOBHm_Chr3g0455481
rosa_laevigata	RLG00000025355 RLG00000025356
rosa_multiflora	Rmu_sc0010428.1_g000005 Rmu_sc0016199.1_g000004
rosa_roxburghii	Rroxscaffold_6G00424220
rosa_rugosa	Rorug03G0007900
rosa_samantha	Rh3AG067400 Rh3AG067500 Rh3BG069700 Rh3BG069800 Rh3CG068200 Rh3CG068300 Rh3DG069800 Rh3DG069900
rosa_wichuraiana	Rw3G005340 Rw3G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	238
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	143
AdeI	CACNNNGTG	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	33, 58
AgsI	TTSAA	3 cut(s)	164, 185, 217
AjnI	CCWGG	2 cut(s)	81, 124
AloI	GAACNNNNNNTCC	2 cut(s)	144, 176
Alw26I	GTCTC	2 cut(s)	142, 189
AlwI	GGATC	1 cut(s)	259
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	4 cut(s)	90, 116, 140, 262
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	2 cut(s)	83, 126
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	142, 189
BfaI	CTAG	2 cut(s)	56, 269
BfuAI	ACCTGC	1 cut(s)	238
Bme1390I	CCNGG	3 cut(s)	83, 102, 126
BmiI	GGNNCC	2 cut(s)	119, 210
BmrFI	CCNGG	3 cut(s)	83, 102, 126
BmsI	GCATC	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	32
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 186, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 58
BseBI	CCWGG	2 cut(s)	83, 126
BseDI	CCNNGG	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	33, 58
BseMII	CTCAG	2 cut(s)	84, 296
BseRI	GAGGAG	1 cut(s)	287
BseYI	CCCAGC	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	102, 287
BslI	CCNNNNNNNGG	2 cut(s)	33, 58
BsmAI	GTCTC	2 cut(s)	142, 189
Bsp143I	GATC	2 cut(s)	177, 264
BspCNI	CTCAG	2 cut(s)	85, 295
BspLI	GGNNCC	2 cut(s)	119, 210
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	177, 264
Bst2UI	CCWGG	2 cut(s)	83, 126
Bst4CI	ACNGT	1 cut(s)	262
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	6, 111
BstDEI	CTNAG	3 cut(s)	17, 93, 282
BstDSI	CCRYGG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	180, 267
BstMAI	GTCTC	2 cut(s)	142, 189
BstMBI	GATC	2 cut(s)	177, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	2 cut(s)	83, 126
BstSCI	CCNGG	3 cut(s)	81, 100, 124
BtgI	CCRYGG	1 cut(s)	32
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	2 cut(s)	6, 111
CfoI	GCGC	1 cut(s)	10
CsiI	ACCWGGT	1 cut(s)	81
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	2 cut(s)	26, 286
CviKI_1	RGCY	2 cut(s)	26, 286
DdeI	CTNAG	3 cut(s)	17, 93, 282
DpnI	GATC	2 cut(s)	179, 266
DpnII	GATC	2 cut(s)	177, 264
DraIII	CACNNNGTG	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	81, 124
FaeI	CATG	1 cut(s)	49
FaiI	YATR	3 cut(s)	41, 47, 293
FatI	CATG	1 cut(s)	45
FspBI	CTAG	2 cut(s)	56, 269
GlaI	GCGC	1 cut(s)	9
GsaI	CCCAGC	1 cut(s)	117
HapII	CCGG	2 cut(s)	102, 287
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	95, 275
HpaII	CCGG	2 cut(s)	102, 287
HphI	GGTGA	4 cut(s)	90, 116, 140, 262
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	3 cut(s)	17, 93, 282
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	177, 264
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	9 cut(s)	41, 68, 95, 99, 105, 111, 115, 138, 233
LweI	GCATC	1 cut(s)	243
MabI	ACCWGGT	1 cut(s)	81
MaeI	CTAG	2 cut(s)	56, 269
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	85, 96, 128
MalI	GATC	2 cut(s)	179, 266
MboI	GATC	2 cut(s)	177, 264
MfeI	CAATTG	1 cut(s)	72
MluCI	AATT	3 cut(s)	72, 143, 165
MlyI	GAGTC	2 cut(s)	104, 284
MmeI	TCCRAC	2 cut(s)	76, 172
MnlI	CCTC	1 cut(s)	265
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	2 cut(s)	102, 287
MspR9I	CCNGG	3 cut(s)	83, 102, 126
MunI	CAATTG	1 cut(s)	72
MvaI	CCWGG	2 cut(s)	83, 126
MwoI	GCNNNNNNNGC	1 cut(s)	253
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	177, 264
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	2 cut(s)	119, 210
NmuCI	GTSAC	2 cut(s)	96, 128
PaqCI	CACCTGC	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PflFI	GACNNNGTC	1 cut(s)	134
PleI	GAGTC	2 cut(s)	103, 283
PpsI	GAGTC	2 cut(s)	103, 283
Psp6I	CCWGG	2 cut(s)	81, 124
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	2 cut(s)	81, 124
PspN4I	GGNNCC	2 cut(s)	119, 210
PsyI	GACNNNGTC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	171
Sau3AI	GATC	2 cut(s)	177, 264
SchI	GAGTC	2 cut(s)	104, 284
ScrFI	CCNGG	3 cut(s)	83, 102, 126
SetI	ASST	5 cut(s)	23, 87, 135, 222, 252
SexAI	ACCWGGT	1 cut(s)	81
SfaNI	GCATC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	72, 143, 165
SspMI	CTAG	2 cut(s)	56, 269
StyD4I	CCNGG	3 cut(s)	81, 100, 124
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	135
TasI	AATT	3 cut(s)	72, 143, 165
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseFI	GTSAC	2 cut(s)	96, 128
Tsp45I	GTSAC	2 cut(s)	96, 128
TspDTI	ATGAA	1 cut(s)	34
TspGWI	ACGGA	1 cut(s)	110
Tth111I	GACNNNGTC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	2 cut(s)	56, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.