Rh3AG067400

protease Do-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0005022
Physical Location & Seq
Reverse (-)
4691687 .. 4692350
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG067400.1

Sequence Viewer

Length: 288 bp
ATGCTTCCAATGTATTGTTTTCGTGATGGTTCGGTTCCTCCACCGGACATAAGGAAAGATGATACTTCTGGTGCCCCTATAGCTGGGGAGAGGCCGGAGCGTACTTATGCCAGTGCATGGTGCATATTCATGCTCCAACTAGGGGCCATTTGCCCAATCGTTGACCAGATCATAGAAATAGTTGGAGACAGAGTGGGGGAACCCTTGAAGGTTGTTGTGAAAAGAGTGAAAGATGAGCAGGTGATACTGACTGTGATCCTAGAGGAGTCATCTCAGCCAGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04210 ko04214 ko04215 ko05012 map04210 map04214 map04215 map05012
Pfam Domains
Protein Families
PDZ_2 Trypsin_2

Protein Analysis

95

Amino Acids

10.56

Weight (kDa)

4.56

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 229
Acc36I ACCTGC 1 cut(s) 229
AccB1I GGYRCC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 117
AclWI GGATC 1 cut(s) 250
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 3 cut(s) 83, 117, 142
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 250
AoxI GGCC 2 cut(s) 92, 144
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 253
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 71
BccI CCATC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 2 cut(s) 140, 260
BfmI CTRYAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 4 cut(s) 36, 73, 145, 201
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 117, 142
Bse1I ACTGG 1 cut(s) 111
BseLI CCNNNNNNNGG 3 cut(s) 83, 117, 142
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 76
BseYI CCCAGC 1 cut(s) 83
BshFI GGCC 2 cut(s) 94, 146
BshNI GGYRCC 1 cut(s) 71
BsiSI CCGG 2 cut(s) 44, 95
BslI CCNNNNNNNGG 3 cut(s) 83, 117, 142
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 2 cut(s) 94, 146
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 2 cut(s) 168, 255
BspANI GGCC 2 cut(s) 94, 146
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 4 cut(s) 36, 73, 145, 201
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 111
BssMI GATC 2 cut(s) 168, 255
Bst4CI ACNGT 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 273
BstKTI GATC 2 cut(s) 171, 258
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 2 cut(s) 168, 255
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 76
BsuRI GGCC 2 cut(s) 94, 146
BtsIMutI CAGTG 1 cut(s) 118
BveI ACCTGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 102
CviAII CATG 2 cut(s) 117, 130
CviJI RGCY 4 cut(s) 83, 94, 146, 277
CviKI_1 RGCY 4 cut(s) 83, 94, 146, 277
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 273
DpnI GATC 2 cut(s) 170, 257
DpnII GATC 2 cut(s) 168, 255
FaeI CATG 2 cut(s) 120, 133
FaiI YATR 8 cut(s) 50, 80, 108, 118, 125, 131, 173, 284
FatI CATG 2 cut(s) 116, 129
FspBI CTAG 2 cut(s) 140, 260
GsaI CCCAGC 1 cut(s) 87
HaeIII GGCC 2 cut(s) 94, 146
HapII CCGG 2 cut(s) 44, 95
Hin1II CATG 2 cut(s) 120, 133
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 266
HpaII CCGG 2 cut(s) 44, 95
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 163
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 116, 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 2 cut(s) 120, 133
Kzo9I GATC 2 cut(s) 168, 255
LmnI GCTCC 2 cut(s) 97, 138
LpnPI CCDG 7 cut(s) 54, 57, 69, 108, 124, 179, 224
MaeI CTAG 2 cut(s) 140, 260
MalI GATC 2 cut(s) 170, 257
MboI GATC 2 cut(s) 168, 255
MhlI GDGCHC 1 cut(s) 76
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 2 cut(s) 160, 163
MnlI CCTC 3 cut(s) 48, 84, 256
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 2 cut(s) 44, 95
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 2 cut(s) 168, 255
NlaIII CATG 2 cut(s) 120, 133
NlaIV GGNNCC 4 cut(s) 36, 73, 145, 201
PaqCI CACCTGC 1 cut(s) 229
PflMI CCANNNNNTGG 1 cut(s) 117
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 83
PspN4I GGNNCC 4 cut(s) 36, 73, 145, 201
PspPI GGNCC 1 cut(s) 144
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 128
Sau3AI GATC 2 cut(s) 168, 255
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 1 cut(s) 275
SduI GDGCHC 1 cut(s) 76
SetI ASST 3 cut(s) 85, 213, 243
SfcI CTRYAG 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 128
SspMI CTAG 2 cut(s) 140, 260
TaaI ACNGT 1 cut(s) 253
TscAI CASTG 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 118
TspRI CASTG 1 cut(s) 118
Van91I CCANNNNNTGG 1 cut(s) 117
XspI CTAG 2 cut(s) 140, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.