Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006402

Physical Location & Seq

Genomic Coordinates Forward (+)

18350411 .. 18354634

Gene Structure 4224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1203700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAGAACCAAAACTCTGAACGTCCCCTCCGCCCTGCTCTGCTTCTTCTTTCTCAGCTGCCACCACCTCCTCCGCCATGCACAAGCTCAAGTTCCCAGCACAGAAGGATACACCTGCGCAGCCACAGCCAACCAAACCGCCTACCCATGCCAGACCTACGCCTTGTACCGAGCCCTCTCCCCCGACTTCCTCGACCTCGCCGCCGTCGGAGACCTCTTCCAAGTCAGCCGCCTCATGATCTCCAACCCCAGCAACATCTCCTCCCCGACTGCCCCCCTTGTCGCCGGCCAACCCCTCTTCGTCCCCCTCTCATGCTCCTGCAACTCCCCCAACTCCTCCATCTCCATTTCCTACGCCAATATCTCCTTCACCATCAAATCCGGCGATACTTTCTACCAGGTCTCCACCCACAACTTCCAAAACCTCACCACCTACCAGTCCGTCGAGGTCGTAAACCCTAATCTGGAAGCCACCAACCTAACCATCGGCGTCACCGCCTATTTTCCGATCTTCTGCAAGTGCCCCAACAGAACCCAGTTCGGAAACGGAACCAATTACCTCATCTCGTACGTTTTCCAGCCGTCTGACAACATCTCGACCGTTGCTTCATTTTTCGGGGTGCAAGCAAAGGCCATAACCGATTTAAACGGCAACAACATCCAGCCTTTTGACACGATTTTCGTGCCGGTGGCTCGCCTTCCAGTACTCTCCCAACCCACTGTTGTTCCTTCTGCTGCACCGTCTGGGAAGACAGAGAGGAAAGGAGTGATCAGAGGGCTGGCAATTGGGCTGGGAATTACCGGACTTGTGCTGATTTTCGTTGTCGGGTTTTTGATTTACAGAGACGGATTGCTGAAGAAGAAGATTGATGGGAAGGGAGATGAGGAGAATAAGGTTCTGTACAGGAGCAAGCAGGGGTCGGAGAGGCGGAAGGAAATGGAGGTTGGTTTGATGGCGGATGTTTCGGATTGCTTGGACAAGTACAAAGTGTTTGGGATTGAAGAGTTGAGAGAGGCCACAGATGGGTTCAGAGAAAGTAGCTTGATTGAAGGGTCCGTGTATAAAGGCTCCATTAATGGAGATTTGTATGCCATCAAGAAGATGAAGTGGAATGCCTACGAGGAGCTCAAGATTTTGCAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

382

Amino Acids

41.78

Weight (kDa)

8.46

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	50 - 107	4.5e-17	NFP/LYK LysM1 domain
LysM2_NFP	PF23457	117 - 171	7e-23	NFP LysM2 domain
LysM2_CERK1_LYK3_4_5	PF23472	119 - 165	1.3e-07	LYK3/4/5 LysM2 domain
LysM3_NFP	PF23462	186 - 223	2.2e-07	NFP LysM3 domain
LysM3_LYK4_5	PF23473	186 - 229	3.3e-06	LYK4/5 LysM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02221
malus_domestica	MD13G1203700.v1.1 MD13G1203800.v1.1 MD16G1205900.v1.1
prunus_persica	Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1
pyrus_communis	pycom13g17710 pycom16g17320
rosa_chinensis	RchiOBHm_Chr4g0389541
rosa_laevigata	RLG00000009973 RLG00000009975
rosa_multiflora	Rmu_co8296341.1_g000001 Rmu_co8368025.1_g000001 Rmu_sc0002498.1_g000001 Rmu_sc0003347.1_g000004 Rmu_sc0003582.1_g000008 Rmu_sc0016342.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335500
rosa_rugosa	Rorug03G0323800
rosa_samantha	Rh4AG028200 Rh4BG021400 Rh4CG030100 Rh4DG021900
rosa_wichuraiana	Rw0G017330 Rw4G002050 Rw4G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	122
Acc16I	TGCGCA	1 cut(s)	118
Acc36I	ACCTGC	1 cut(s)	122
AciI	CCGC	8 cut(s)	30, 73, 138, 201, 229, 495, 928, 956
AcoI	YGGCCR	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	875
AcyI	GRCGYC	1 cut(s)	489
AfaI	GTAC	5 cut(s)	167, 569, 705, 902, 983
AfiI	CCNNNNNNNGG	2 cut(s)	463, 1023
AgsI	TTSAA	2 cut(s)	1001, 1049
AjnI	CCWGG	1 cut(s)	396
AjuI	GAANNNNNNNTTGG	4 cut(s)	350, 382, 927, 959
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	4 cut(s)	57, 86, 1041, 1126
AluI	AGCT	4 cut(s)	57, 86, 1041, 1126
Alw21I	GWGCWC	1 cut(s)	1128
Alw26I	GTCTC	3 cut(s)	204, 406, 837
AoxI	GGCC	3 cut(s)	286, 630, 1014
ApeKI	GCWGC	3 cut(s)	57, 119, 734
ArsI	GACNNNNNNTTYG	2 cut(s)	662, 694
AseI	ATTAAT	1 cut(s)	1074
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	1053
AsuHPI	GGTGA	3 cut(s)	361, 418, 484
AvaII	GGWCC	1 cut(s)	1053
BaeGI	GKGCMC	1 cut(s)	524
BanII	GRGCYC	2 cut(s)	175, 1128
BbsI	GAAGAC	1 cut(s)	755
Bbv12I	GWGCWC	1 cut(s)	1128
BbvI	GCAGC	3 cut(s)	44, 131, 721
BccI	CCATC	7 cut(s)	347, 380, 491, 863, 946, 1016, 1100
BceAI	ACGGC	3 cut(s)	188, 565, 664
BcgI	CGANNNNNNTGC	2 cut(s)	664, 698
BciT130I	CCWGG	1 cut(s)	398
BciVI	GTATCC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	768
BcoDI	GTCTC	3 cut(s)	204, 406, 837
BfuAI	ACCTGC	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	101
BisI	GCNGC	5 cut(s)	58, 120, 201, 229, 735
BlsI	GCNGC	5 cut(s)	59, 121, 202, 230, 736
BmcAI	AGTACT	1 cut(s)	705
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	1 cut(s)	1053
BmgT120I	GGNCC	1 cut(s)	1053
BmiI	GGNNCC	3 cut(s)	550, 1054, 1069
BmrFI	CCNGG	1 cut(s)	398
BmrI	ACTGGG	1 cut(s)	529
BmuI	ACTGGG	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	755
BpuEI	CTTGAG	2 cut(s)	72, 1112
BsaHI	GRCGYC	1 cut(s)	489
BsaI	GGTCTC	2 cut(s)	204, 406
BsaWI	WCCGGW	1 cut(s)	800
BsaXI	ACNNNNNCTCC	6 cut(s)	11, 41, 245, 275, 386, 416
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 1023
Bse118I	RCCGGY	2 cut(s)	284, 685
Bse1I	ACTGG	3 cut(s)	436, 535, 701
BseBI	CCWGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	657, 964
BseLI	CCNNNNNNNGG	2 cut(s)	463, 1023
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	3 cut(s)	436, 535, 701
BseRI	GAGGAG	5 cut(s)	59, 250, 325, 899, 1136
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	3 cut(s)	44, 131, 721
BseYI	CCCAGC	3 cut(s)	95, 248, 790
BsgI	GTGCAG	1 cut(s)	720
Bsh1285I	CGRYCG	1 cut(s)	600
BshFI	GGCC	3 cut(s)	288, 632, 1016
BsiEI	CGRYCG	1 cut(s)	600
BsiHKAI	GWGCWC	1 cut(s)	1128
BsiSI	CCGG	4 cut(s)	285, 381, 686, 801
BsiWI	CGTACG	1 cut(s)	567
BslFI	GGGAC	2 cut(s)	8, 287
BslI	CCNNNNNNNGG	2 cut(s)	463, 1023
BsmAI	GTCTC	3 cut(s)	204, 406, 837
BsmBI	CGTCTC	1 cut(s)	837
BsmFI	GGGAC	2 cut(s)	8, 287
BsmI	GAATGC	1 cut(s)	1117
BsnI	GGCC	3 cut(s)	288, 632, 1016
Bso31I	GGTCTC	2 cut(s)	204, 406
Bsp1286I	GDGCHC	3 cut(s)	175, 524, 1128
Bsp1407I	TGTACA	1 cut(s)	900
Bsp143I	GATC	3 cut(s)	237, 507, 768
BspACI	CCGC	8 cut(s)	30, 73, 138, 201, 229, 495, 928, 956
BspANI	GGCC	3 cut(s)	288, 632, 1016
BspCNI	CTCAG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	550, 1054, 1069
BspMI	ACCTGC	1 cut(s)	122
BspTNI	GGTCTC	2 cut(s)	204, 406
BsrFI	RCCGGY	2 cut(s)	284, 685
BsrGI	TGTACA	1 cut(s)	900
BsrI	ACTGG	3 cut(s)	436, 535, 701
BssAI	RCCGGY	2 cut(s)	284, 685
BssMI	GATC	3 cut(s)	237, 507, 768
BssNI	GRCGYC	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	3 cut(s)	601, 721, 741
Bst6I	CTCTTC	3 cut(s)	221, 302, 996
BstACI	GRCGYC	1 cut(s)	489
BstAUI	TGTACA	1 cut(s)	900
BstC8I	GCNNGC	5 cut(s)	286, 624, 694, 780, 911
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	657, 964
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	3 cut(s)	240, 510, 771
BstMAI	GTCTC	3 cut(s)	204, 406, 837
BstMBI	GATC	3 cut(s)	237, 507, 768
BstMCI	CGRYCG	1 cut(s)	600
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	524
BstV1I	GCAGC	3 cut(s)	44, 131, 721
BstV2I	GAAGAC	1 cut(s)	755
BsuI	GTATCC	1 cut(s)	101
BsuRI	GGCC	3 cut(s)	288, 632, 1016
BtsCI	GGATG	2 cut(s)	657, 964
BtsIMutI	CAGTG	1 cut(s)	717
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	5 cut(s)	286, 624, 694, 780, 911
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	2 cut(s)	284, 685
Cfr13I	GGNCC	1 cut(s)	1053
CseI	GACGC	1 cut(s)	478
CsiI	ACCWGGT	1 cut(s)	396
Csp6I	GTAC	5 cut(s)	166, 568, 704, 901, 982
CviAII	CATG	4 cut(s)	77, 147, 235, 312
CviQI	GTAC	5 cut(s)	166, 568, 704, 901, 982
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	3 cut(s)	239, 509, 770
DpnII	GATC	3 cut(s)	237, 507, 768
DraI	TTTAAA	1 cut(s)	645
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	3 cut(s)	221, 302, 996
EarI	CTCTTC	3 cut(s)	221, 302, 996
EciI	GGCGGA	4 cut(s)	19, 62, 943, 971
Ecl136II	GAGCTC	1 cut(s)	1126
Eco24I	GRGCYC	2 cut(s)	175, 1128
Eco31I	GGTCTC	2 cut(s)	204, 406
Eco47I	GGWCC	1 cut(s)	1053
Eco53kI	GAGCTC	1 cut(s)	1126
Eco57I	CTGAAG	1 cut(s)	875
EcoICRI	GAGCTC	1 cut(s)	1126
EcoRII	CCWGG	1 cut(s)	396
EcoT38I	GRGCYC	2 cut(s)	175, 1128
Esp3I	CGTCTC	1 cut(s)	837
FaeI	CATG	4 cut(s)	80, 150, 238, 315
FaiI	YATR	7 cut(s)	78, 148, 236, 313, 635, 1062, 1089
FaqI	GGGAC	2 cut(s)	8, 287
FatI	CATG	4 cut(s)	76, 146, 234, 311
FbaI	TGATCA	1 cut(s)	768
Fnu4HI	GCNGC	5 cut(s)	58, 120, 201, 229, 735
FokI	GGATG	2 cut(s)	644, 971
FriOI	GRGCYC	2 cut(s)	175, 1128
Fsp4HI	GCNGC	5 cut(s)	58, 120, 201, 229, 735
FspI	TGCGCA	1 cut(s)	118
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	5 cut(s)	58, 120, 201, 229, 735
GsaI	CCCAGC	3 cut(s)	99, 252, 794
HaeIII	GGCC	3 cut(s)	288, 632, 1016
HapII	CCGG	4 cut(s)	285, 381, 686, 801
HgaI	GACGC	1 cut(s)	478
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	4 cut(s)	80, 150, 238, 315
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HpaII	CCGG	4 cut(s)	285, 381, 686, 801
HphI	GGTGA	3 cut(s)	361, 418, 484
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	9 cut(s)	18, 209, 507, 542, 586, 773, 922, 967, 1031
Hpy188III	TCNNGA	5 cut(s)	235, 464, 595, 1096, 1129
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	2 cut(s)	209, 446
HpyAV	CCTTC	7 cut(s)	98, 376, 707, 738, 868, 925, 1043
HpyCH4III	ACNGT	3 cut(s)	601, 721, 741
HpyCH4IV	ACGT	2 cut(s)	21, 570
HpyCH4V	TGCA	6 cut(s)	80, 321, 516, 622, 737, 1138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	21, 570
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	4 cut(s)	80, 150, 238, 315
HspAI	GCGC	1 cut(s)	117
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	768
Kzo9I	GATC	3 cut(s)	237, 507, 768
LmnI	GCTCC	4 cut(s)	320, 906, 1073, 1123
Lsp1109I	GCAGC	3 cut(s)	44, 131, 721
MabI	ACCWGGT	1 cut(s)	396
MaeII	ACGT	2 cut(s)	21, 570
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	3 cut(s)	239, 509, 770
MboI	GATC	3 cut(s)	237, 507, 768
MfeI	CAATTG	1 cut(s)	783
MhlI	GDGCHC	3 cut(s)	175, 524, 1128
MluCI	AATT	3 cut(s)	553, 783, 795
MmeI	TCCRAC	3 cut(s)	187, 267, 900
MroNI	GCCGGC	1 cut(s)	284
MseI	TTAA	2 cut(s)	644, 1074
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	4 cut(s)	285, 381, 686, 801
MspR9I	CCNGG	1 cut(s)	398
MunI	CAATTG	1 cut(s)	783
Mva1269I	GAATGC	1 cut(s)	1117
MvaI	CCWGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	125
NaeI	GCCGGC	1 cut(s)	286
NdeII	GATC	3 cut(s)	237, 507, 768
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	4 cut(s)	80, 150, 238, 315
NlaIV	GGNNCC	3 cut(s)	550, 1054, 1069
NmuCI	GTSAC	1 cut(s)	490
NsbI	TGCGCA	1 cut(s)	118
PagI	TCATGA	1 cut(s)	234
PaqCI	CACCTGC	1 cut(s)	122
PctI	GAATGC	1 cut(s)	1117
PdiI	GCCGGC	1 cut(s)	286
Pfl23II	CGTACG	1 cut(s)	567
PkrI	GCNGC	5 cut(s)	59, 121, 202, 230, 736
PshBI	ATTAAT	1 cut(s)	1074
Psp124BI	GAGCTC	1 cut(s)	1128
Psp6I	CCWGG	1 cut(s)	396
PspFI	CCCAGC	3 cut(s)	95, 248, 790
PspGI	CCWGG	1 cut(s)	396
PspLI	CGTACG	1 cut(s)	567
PspN4I	GGNNCC	3 cut(s)	550, 1054, 1069
PspPI	GGNCC	1 cut(s)	1053
PvuII	CAGCTG	1 cut(s)	57
RsaI	GTAC	5 cut(s)	167, 569, 705, 902, 983
RsaNI	GTAC	5 cut(s)	166, 568, 704, 901, 982
SacI	GAGCTC	1 cut(s)	1128
SaqAI	TTAA	2 cut(s)	644, 1074
SatI	GCNGC	5 cut(s)	58, 120, 201, 229, 735
Sau3AI	GATC	3 cut(s)	237, 507, 768
Sau96I	GGNCC	1 cut(s)	1053
ScaI	AGTACT	1 cut(s)	705
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	3 cut(s)	175, 524, 1128
SexAI	ACCWGGT	1 cut(s)	396
SinI	GGWCC	1 cut(s)	1053
SmlI	CTYRAG	2 cut(s)	87, 1127
SmoI	CTYRAG	2 cut(s)	87, 1127
Sse9I	AATT	3 cut(s)	553, 783, 795
SsiI	CCGC	8 cut(s)	30, 73, 138, 201, 229, 495, 928, 956
SstI	GAGCTC	1 cut(s)	1128
StyD4I	CCNGG	1 cut(s)	396
TaaI	ACNGT	3 cut(s)	601, 721, 741
TaiI	ACGT	2 cut(s)	24, 573
TaqI	TCGA	3 cut(s)	192, 444, 596
TasI	AATT	3 cut(s)	553, 783, 795
TatI	WGTACW	3 cut(s)	703, 900, 981
TauI	GCSGC	2 cut(s)	203, 231
Tru1I	TTAA	2 cut(s)	644, 1074
Tru9I	TTAA	2 cut(s)	644, 1074
TscAI	CASTG	1 cut(s)	724
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	3 cut(s)	57, 119, 734
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	2 cut(s)	597, 1118
TspGWI	ACGGA	4 cut(s)	430, 561, 861, 1045
TspRI	CASTG	1 cut(s)	724
VpaK11BI	GGWCC	1 cut(s)	1053
VspI	ATTAAT	1 cut(s)	1074
ZrmI	AGTACT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.