Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006402

Physical Location & Seq

Genomic Coordinates Forward (+)

35424634 .. 35428045

Gene Structure 3412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0323800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3240 bp

ATGGGATCGTTAACTTTTTCCCATAAAGTTTGTTCTCTAGCATGCTTTACTTTGTATGTCCAGCTAGTTTCATTACCAAACATTGCTTTTGCTTCTACTAGTTCAGCTGAAGCAGAGGCTCTTCTCAAATGGAAAGCCAACTTTCAAAACCAAACTCAAAATAATTTTACCTCCTGGACTTACTTTCCCATCAATTCCACCCATCCAAAAGAAAATGGAAGCCCATGCAATCGTTGGAATGGTATTTCATGCAATCCTGCTGGAAGTGTCAACAACATAAACCTCACAAATTCTGGTATTCAAGGTACGCTGCATGGATTTTCGTTCCTTTCCTTCCCTAACCTTGAATATATTGACCTTAGCTTTAATGAACTCTTCGATTCCATCCCACCTCAGATTAGTTTCCTCTCCAAACTCACCTATCTTGATCTATCTCGTAATCTGTTGTCTGGGAAAATCCCACCAGAAATTGGTCTTCTGGCAAATCTTCAGGTCTTGCATCTAAATGAAAACCAGTTAAATGGCTCAATTCCTCAAGAAATAGGGCAGCTTAAGTTTCTTTCTGAGCTTGCTCTGTACATCAACAGTCTAGAAGGTCTAATTCCTGCTTCTTTGGGTAATTTGAGTAACCTGACTTCTTTGTATCTCTATAGTAATAACCTTTCTGGTGCTATTCCTGTTTCTCTGGGTAATTTGAGCAACCTTACTCTTTTGTATCTTCAAGAAAATCAACTTTCTGGTTACATTCCTCCAGAAATGGGAAAACTTTCTAATTTGGTTGAGCTCCAGATGCAATCCAACAAGTTAACAGGTCTCATCCCTCCGCATTTTGGAAACTTAAAAAAGCTAACTTATTTGTACTTGTACTCGAATGGTCTTTCGGGCTCTATTCCTCCGGAAATAGGAAATATGAAGTCTCTAATTCAATTATGTTTTCAAACAAACAATCTTTCTGGCTCAATCCCTCCATCTCTAGGTGATCTCACAAACCTTACCCATCTATATCTCTACCAAAATAACCTATCCGGAATCATTCCTAAAGAGCTTGGGTACCTGATTTCTCTTGTAGACCTACAGTTGGAGGAGAATCAACTCAGTGGTTCCATTCCCGCTTCAGTTGGTGACTTGAGTAACTTAGAATTTTTATTCCTTCGTGATAACCAACTTTCTGGCCCCATCCCCCAAGAGATTGGGAATCTCAGGAAGTTGAAGGGTCTCTTCTTAGATACTAATAGTTTTTCTGGTCATTTACCCCAATATATTTGCAGTGGTAAATCTCTGCAAAATTTTTCTGTAAACAACAACCATTTGGTAGGTCCAATCCCCAAAACCTTGAAAACTTGCAAGAGCTTACTGAGAGTCCATTTTGAAGGGAACAATTTGACAGGCAATATATCAGAAGTCTTTGGTGCCTATCCAAATCTTCAATATATAGATATTAGCCACAACAACTTCTACGGTGAAATCTCACCCATGTGGGGGCAATGTCCTCAGTTAGCAACCCTAAGAATTGCAAGAAACAACCTTACTGGTAGCATACCACCTGAGCTCGGCAATGCAACCCAAATTCATAGACTTGATCTTTCCTCAAATCGTTTAGTTGGGGTGATTCCAAATGAGATTGGGAGGTTAACAGCTTTGCTGGATCTGATATTGAATAACAATCAACTTTGGGGTCACATACCATCAGGCTTAAAAACATTGATGGATCTTGAATATCTTGACATGTCCACCAACAAATTCAATGACTCAATTCCAAGCATTTTAGGTGACTTGTCCAAATTACACCACTTGAATTTGAGCAACAATAAGTTCTGCCAAGAAATTCCAATTCAATTGAGCAGTTTAGTTCACCTGTCTGAGCTAGACTTGAGTCATAATTCACTGGAGGATAAGATACCAGCAGAAATGAGCAAAATGCAAAGCTTGGAGATTCTAAATCTTTCCCACAACAATCTTTCTGGTCCCATTCCGACAAATTTCAAAGAAATGCATAGCTTGGTTCAAATCGACTTATCCTACAACCAGTTGCAGGGTCCTGTCCCCAACAACAAAGCATTTCAAGATGCTCCTTTGGAAGGCAATGAAGGACTGTGTGGCAATGTTGCAAAACTTCAACCCTGCAATATTCCTTCCATGGATAATGAGCATACCTCAAAAATAGATCGAAGGCTCATGTTTTTAATTATTTTCCCTATTTTGGGAACACTTTTTCTTGTACTTAACTTCCTTGGAATTTCCATGGTTAGAAAAAAAAGAAAAAAGGAGCAGGAGAGCGGGCAGAGCAATGTGCAGCACCAATTTTTTTTTTTAATGTCTGAATTTGATGGGAGACGAATGTATGGAGAAATTATCAAGGCAACCAATGGTTTCGATGCTGTATATTGCATCGGAAAAGGAGGATCTGGAAGTGTCTACAAGGTAGAGCTACTACTATCAGGTACCATAGTTGCAGTGAAGAAATTCCACCCAATACTTGATGGTGAGGAGTCGTCTCAGAAGGAATTTGTTAACGAAATAAGGGCACTAATGGAGATACGACACCGAAACATTGTGAAACTTCATGGTTTCTGTCTACACGCCCGTCATTCGTTTTTGGTCTATGACTACCTAGAAAAGGGTAGCCTTGCTTCAATGTTGAGCAAAGAATACGAAGCTAACAAACTGGACTGGAGCACAAGGGTGAGGATTGTGAAAGGTGTAGCTCACGCCCTGTCCTATATGCATCATGATTGCTCTCCCCCTATTGTGCATCGAGACATATCAAGCAACAACATACTGCTAGATTACGATTATGAGCCTGTTGTTTCAGACTTTGGCACCGCTAAGCTTTTAAATCCAGACTCATCGAATTGGACTGCCCGCGCAGGTACATATGGATATATAGCACCAGAGCTTGCTTACACAATGAAGGTAACCGAGAAATGTGATGTTTATAGCTTTGGGGTGCTGGCATTGGAAGTGATAATGGGAAAGCAGCTGGCTGATTTCGTGTCCTCCTTTTCGACACCATCCGCCAACGGAGACATATTGTTGAAGGATTTTTTCGACCAACGCCTCGCCCCTCCGACACCAAATAATGAGAATGAACTGATAAGAATTGCATGGCTAGCAATTGCGTGCAAACATTCTCATCCAGAATCCAGGCCAACAATGCAAATGGTTTCTCAAGTGTTATCATCCAAACTTGCAAATTCCTCTAGACTACCAGAGATTACTCTTGAACAACTCATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

1079

Amino Acids

119.79

Weight (kDa)

6.14

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	90 - 149	3.3e-06	Leucine rich repeat
LRR_14	PF23598	111 - 241	9.6e-11	Leucine-rich repeat region
LRR_8	PF13855	187 - 245	1.6e-06	Leucine rich repeat
LRR_14	PF23598	276 - 361	7.3e-08	Leucine-rich repeat region
LRR_14	PF23598	346 - 508	1.5e-08	Leucine-rich repeat region
LRR_14	PF23598	502 - 603	2e-06	Leucine-rich repeat region
LRR_14	PF23598	589 - 672	5.3e-06	Leucine-rich repeat region
LRR_8	PF13855	618 - 677	6.1e-09	Leucine rich repeat
Pkinase	PF00069	796 - 1056	3.3e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	797 - 1058	1.3e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02221
malus_domestica	MD13G1203700.v1.1 MD13G1203800.v1.1 MD16G1205900.v1.1
prunus_persica	Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1
pyrus_communis	pycom13g17710 pycom16g17320
rosa_chinensis	RchiOBHm_Chr4g0389541
rosa_laevigata	RLG00000009973 RLG00000009975
rosa_multiflora	Rmu_co8296341.1_g000001 Rmu_co8368025.1_g000001 Rmu_sc0002498.1_g000001 Rmu_sc0003347.1_g000004 Rmu_sc0003582.1_g000008 Rmu_sc0016342.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335500
rosa_rugosa	Rorug03G0323800
rosa_samantha	Rh4AG028200 Rh4BG021400 Rh4CG030100 Rh4DG021900
rosa_wichuraiana	Rw0G017330 Rw4G002050 Rw4G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2858
Acc65I	GGTACC	2 cut(s)	1050, 2441
AccB1I	GGYRCC	4 cut(s)	1050, 1409, 2441, 2819
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccBSI	CCGCTC	1 cut(s)	2277
AccI	GTMKAC	3 cut(s)	1068, 2415, 2575
AccII	CGCG	1 cut(s)	2865
AccIII	TCCGGA	2 cut(s)	895, 1025
AciI	CCGC	6 cut(s)	824, 1110, 2277, 2823, 2863, 3015
AclWI	GGATC	4 cut(s)	13, 1653, 1716, 2410
AcuI	CTGAAG	3 cut(s)	129, 473, 1098
AfaI	GTAC	8 cut(s)	307, 578, 860, 866, 1052, 2220, 2443, 2872
AflII	CTTAAG	1 cut(s)	551
AflIII	ACRYGT	1 cut(s)	1725
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	173, 3143
AleI	CACNNNNGTG	2 cut(s)	1474, 2681
Alw21I	GWGCWC	3 cut(s)	786, 1551, 2678
Alw26I	GTCTC	7 cut(s)	818, 921, 1220, 2326, 2499, 2751, 3018
AlwI	GGATC	4 cut(s)	13, 1653, 1716, 2410
Aor13HI	TCCGGA	2 cut(s)	895, 1025
AoxI	GGCC	2 cut(s)	1171, 3146
ApeKI	GCWGC	4 cut(s)	310, 547, 2293, 2977
AseI	ATTAAT	1 cut(s)	3234
Asp700I	GAANNNNTTC	2 cut(s)	766, 2462
Asp718I	GGTACC	2 cut(s)	1050, 2441
AspLEI	GCGC	1 cut(s)	2867
AspS9I	GGNCC	4 cut(s)	1172, 1316, 1964, 2036
AsuNHI	GCTAGC	1 cut(s)	3109
AvaII	GGWCC	3 cut(s)	1316, 1964, 2036
BaeGI	GKGCMC	1 cut(s)	2527
BaeI	ACNNNNGTAYC	2 cut(s)	2433, 2466
BanI	GGYRCC	4 cut(s)	1050, 1409, 2441, 2819
BanII	GRGCYC	3 cut(s)	786, 887, 1551
BarI	GAAGNNNNNNTAC	4 cut(s)	619, 651, 2614, 2646
BbsI	GAAGAC	1 cut(s)	467
Bbv12I	GWGCWC	3 cut(s)	786, 1551, 2678
BbvI	GCAGC	4 cut(s)	297, 559, 2305, 2989
BciT130I	CCWGG	2 cut(s)	175, 3145
BcoDI	GTCTC	7 cut(s)	818, 921, 1220, 2326, 2499, 2751, 3018
BcuI	ACTAGT	1 cut(s)	98
BfmI	CTRYAG	2 cut(s)	649, 1073
BfrI	CTTAAG	1 cut(s)	551
BfuAI	ACCTGC	1 cut(s)	2858
BisI	GCNGC	4 cut(s)	311, 548, 2294, 2978
BlpI	GCTNAGC	1 cut(s)	2826
BlsI	GCNGC	4 cut(s)	312, 549, 2295, 2979
Bme1390I	CCNGG	2 cut(s)	175, 3145
Bme18I	GGWCC	3 cut(s)	1316, 1964, 2036
BmgT120I	GGNCC	4 cut(s)	1172, 1316, 1964, 2036
BmiI	GGNNCC	8 cut(s)	1052, 1102, 1174, 1411, 1966, 2037, 2443, 2821
BmrFI	CCNGG	2 cut(s)	175, 3145
BmsI	GCATC	7 cut(s)	508, 780, 2056, 2365, 2397, 2734, 2761
BmtI	GCTAGC	1 cut(s)	3113
BoxI	GACNNNNGTC	1 cut(s)	1872
BpiI	GAAGAC	1 cut(s)	467
BplI	GAGNNNNNCTC	2 cut(s)	2138, 2170
BpmI	CTGGAG	4 cut(s)	735, 770, 1907, 2692
Bpu10I	CCTNAGC	2 cut(s)	359, 1545
Bpu1102I	GCTNAGC	1 cut(s)	2826
BpuEI	CTTGAG	4 cut(s)	519, 1147, 1891, 3153
BsaI	GGTCTC	2 cut(s)	818, 1220
BsaJI	CCNNGG	3 cut(s)	2136, 2230, 2241
BsaWI	WCCGGW	2 cut(s)	895, 1025
Bse1I	ACTGG	6 cut(s)	514, 1534, 1890, 2026, 2670, 2675
Bse3DI	GCAATG	6 cut(s)	81, 1490, 1561, 2089, 2107, 2293
BseAI	TCCGGA	2 cut(s)	895, 1025
BseBI	CCWGG	2 cut(s)	175, 3145
BseDI	CCNNGG	3 cut(s)	2136, 2230, 2241
BseGI	GGATG	7 cut(s)	202, 384, 816, 1176, 3011, 3133, 3179
BseMI	GCAATG	6 cut(s)	81, 1490, 1561, 2089, 2107, 2293
BseMII	CTCAG	9 cut(s)	407, 555, 1108, 1213, 1346, 1505, 1536, 1851, 2510
BseNI	ACTGG	6 cut(s)	514, 1534, 1890, 2026, 2670, 2675
BseRI	GAGGAG	2 cut(s)	1097, 2501
BseSI	GKGCMC	1 cut(s)	2527
BseXI	GCAGC	4 cut(s)	297, 559, 2305, 2989
BsgI	GTGCAG	1 cut(s)	2312
Bsh1236I	CGCG	1 cut(s)	2865
BshFI	GGCC	2 cut(s)	1173, 3148
BshNI	GGYRCC	4 cut(s)	1050, 1409, 2441, 2819
BsiHKAI	GWGCWC	3 cut(s)	786, 1551, 2678
BsiSI	CCGG	2 cut(s)	896, 1026
BslFI	GGGAC	2 cut(s)	1950, 2027
BsmAI	GTCTC	7 cut(s)	818, 921, 1220, 2326, 2499, 2751, 3018
BsmBI	CGTCTC	2 cut(s)	2326, 2499
BsmFI	GGGAC	2 cut(s)	1950, 2027
BsnI	GGCC	2 cut(s)	1173, 3148
Bso31I	GGTCTC	2 cut(s)	818, 1220
Bsp1286I	GDGCHC	5 cut(s)	786, 887, 1551, 2527, 2678
Bsp13I	TCCGGA	2 cut(s)	895, 1025
Bsp1407I	TGTACA	1 cut(s)	576
Bsp143I	GATC	8 cut(s)	5, 427, 979, 1579, 1645, 1708, 2164, 2402
Bsp1720I	GCTNAGC	1 cut(s)	2826
Bsp19I	CCATGG	2 cut(s)	2136, 2241
BspACI	CCGC	6 cut(s)	824, 1110, 2277, 2823, 2863, 3015
BspANI	GGCC	2 cut(s)	1173, 3148
BspCNI	CTCAG	9 cut(s)	406, 556, 1107, 1212, 1347, 1504, 1537, 1852, 2509
BspEI	TCCGGA	2 cut(s)	895, 1025
BspFNI	CGCG	1 cut(s)	2865
BspHI	TCATGA	1 cut(s)	2728
BspLI	GGNNCC	8 cut(s)	1052, 1102, 1174, 1411, 1966, 2037, 2443, 2821
BspMI	ACCTGC	1 cut(s)	2858
BspOI	GCTAGC	1 cut(s)	3113
BspPI	GGATC	4 cut(s)	13, 1653, 1716, 2410
BspQI	GCTCTTC	1 cut(s)	126
BspT107I	GGYRCC	4 cut(s)	1050, 1409, 2441, 2819
BspTI	CTTAAG	1 cut(s)	551
BspTNI	GGTCTC	2 cut(s)	818, 1220
BsrBI	CCGCTC	1 cut(s)	2277
BsrDI	GCAATG	6 cut(s)	81, 1490, 1561, 2089, 2107, 2293
BsrGI	TGTACA	1 cut(s)	576
BsrI	ACTGG	6 cut(s)	514, 1534, 1890, 2026, 2670, 2675
BssECI	CCNNGG	3 cut(s)	2136, 2230, 2241
BssMI	GATC	8 cut(s)	5, 427, 979, 1579, 1645, 1708, 2164, 2402
BssT1I	CCWWGG	3 cut(s)	2136, 2230, 2241
Bst2UI	CCWGG	2 cut(s)	175, 3145
Bst4CI	ACNGT	4 cut(s)	587, 1077, 1460, 2094
Bst6I	CTCTTC	3 cut(s)	126, 380, 1223
BstAFI	CTTAAG	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	576
BstC8I	GCNNGC	9 cut(s)	43, 570, 2279, 2863, 2898, 2952, 2982, 3111, 3121
BstDSI	CCRYGG	2 cut(s)	2136, 2241
BstEII	GGTNACC	1 cut(s)	2914
BstENI	CCTNNNNNAGG	2 cut(s)	2076, 2615
BstF5I	GGATG	7 cut(s)	202, 384, 816, 1176, 3011, 3133, 3179
BstFNI	CGCG	1 cut(s)	2865
BstHHI	GCGC	1 cut(s)	2867
BstKTI	GATC	8 cut(s)	8, 430, 982, 1582, 1648, 1711, 2167, 2405
BstMAI	GTCTC	7 cut(s)	818, 921, 1220, 2326, 2499, 2751, 3018
BstMBI	GATC	8 cut(s)	5, 427, 979, 1579, 1645, 1708, 2164, 2402
BstMWI	GCNNNNNNNGC	4 cut(s)	790, 2283, 3110, 3154
BstNI	CCWGG	2 cut(s)	175, 3145
BstNSI	RCATGY	2 cut(s)	45, 1729
BstPAI	GACNNNNGTC	1 cut(s)	1872
BstPI	GGTNACC	1 cut(s)	2914
BstSCI	CCNGG	2 cut(s)	173, 3143
BstSFI	CTRYAG	2 cut(s)	649, 1073
BstSLI	GKGCMC	1 cut(s)	2527
BstUI	CGCG	1 cut(s)	2865
BstV1I	GCAGC	4 cut(s)	297, 559, 2305, 2989
BstV2I	GAAGAC	1 cut(s)	467
BstX2I	RGATCY	3 cut(s)	1645, 1708, 2402
BstXI	CCANNNNNNTGG	3 cut(s)	521, 1169, 1190
BstYI	RGATCY	3 cut(s)	1645, 1708, 2402
BsuRI	GGCC	2 cut(s)	1173, 3148
BtgI	CCRYGG	2 cut(s)	2136, 2241
BtsCI	GGATG	7 cut(s)	202, 384, 816, 1176, 3011, 3133, 3179
BtsI	GCAGTG	2 cut(s)	1273, 2460
BtsIMutI	CAGTG	4 cut(s)	1102, 1273, 1883, 2460
BveI	ACCTGC	1 cut(s)	2858
Cac8I	GCNNGC	9 cut(s)	43, 570, 2279, 2863, 2898, 2952, 2982, 3111, 3121
CciI	TCATGA	1 cut(s)	2728
CfoI	GCGC	1 cut(s)	2867
Cfr13I	GGNCC	4 cut(s)	1172, 1316, 1964, 2036
Csp6I	GTAC	8 cut(s)	306, 577, 859, 865, 1051, 2219, 2442, 2871
CviQI	GTAC	8 cut(s)	306, 577, 859, 865, 1051, 2219, 2442, 2871
DpnI	GATC	8 cut(s)	7, 429, 981, 1581, 1647, 1710, 2166, 2404
DpnII	GATC	8 cut(s)	5, 427, 979, 1579, 1645, 1708, 2164, 2402
DraI	TTTAAA	1 cut(s)	2835
Eam1104I	CTCTTC	3 cut(s)	126, 380, 1223
EarI	CTCTTC	3 cut(s)	126, 380, 1223
EciI	GGCGGA	1 cut(s)	3004
Ecl136II	GAGCTC	2 cut(s)	784, 1549
Eco130I	CCWWGG	3 cut(s)	2136, 2230, 2241
Eco24I	GRGCYC	3 cut(s)	786, 887, 1551
Eco31I	GGTCTC	2 cut(s)	818, 1220
Eco47I	GGWCC	3 cut(s)	1316, 1964, 2036
Eco53kI	GAGCTC	2 cut(s)	784, 1549
Eco57I	CTGAAG	3 cut(s)	129, 473, 1098
Eco91I	GGTNACC	1 cut(s)	2914
EcoICRI	GAGCTC	2 cut(s)	784, 1549
EcoNI	CCTNNNNNAGG	2 cut(s)	2076, 2615
EcoO109I	RGGNCCY	1 cut(s)	2036
EcoO65I	GGTNACC	1 cut(s)	2914
EcoRII	CCWGG	2 cut(s)	173, 3143
EcoT14I	CCWWGG	3 cut(s)	2136, 2230, 2241
EcoT22I	ATGCAT	2 cut(s)	1995, 2727
EcoT38I	GRGCYC	3 cut(s)	786, 887, 1551
ErhI	CCWWGG	3 cut(s)	2136, 2230, 2241
Esp3I	CGTCTC	2 cut(s)	2326, 2499
FalI	AAGNNNNNCTT	2 cut(s)	1202, 1234
FaqI	GGGAC	2 cut(s)	1950, 2027
FauI	CCCGC	3 cut(s)	1117, 2270, 2870
FauNDI	CATATG	1 cut(s)	2875
FblI	GTMKAC	3 cut(s)	1068, 2415, 2575
Fnu4HI	GCNGC	4 cut(s)	311, 548, 2294, 2978
FokI	GGATG	7 cut(s)	189, 371, 803, 1163, 2998, 3120, 3166
FriOI	GRGCYC	3 cut(s)	786, 887, 1551
Fsp4HI	GCNGC	4 cut(s)	311, 548, 2294, 2978
GlaI	GCGC	1 cut(s)	2866
GluI	GCNGC	4 cut(s)	311, 548, 2294, 2978
GsuI	CTGGAG	4 cut(s)	735, 770, 1907, 2692
HaeIII	GGCC	2 cut(s)	1173, 3148
HapII	CCGG	2 cut(s)	896, 1026
HhaI	GCGC	1 cut(s)	2867
Hin6I	GCGC	1 cut(s)	2865
HinP1I	GCGC	1 cut(s)	2865
HincII	GTYRAC	5 cut(s)	12, 271, 807, 1632, 2512
HindII	GTYRAC	5 cut(s)	12, 271, 807, 1632, 2512
HindIII	AAGCTT	2 cut(s)	1924, 2828
HpaI	GTTAAC	4 cut(s)	12, 807, 1632, 2512
HpaII	CCGG	2 cut(s)	896, 1026
HpyCH4III	ACNGT	4 cut(s)	587, 1077, 1460, 2094
HpyF10VI	GCNNNNNNNGC	4 cut(s)	790, 2283, 3110, 3154
HspAI	GCGC	1 cut(s)	2865
Kpn2I	TCCGGA	2 cut(s)	895, 1025
KpnI	GGTACC	2 cut(s)	1054, 2445
KspAI	GTTAAC	4 cut(s)	12, 807, 1632, 2512
Kzo9I	GATC	8 cut(s)	5, 427, 979, 1579, 1645, 1708, 2164, 2402
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	4 cut(s)	789, 2074, 2266, 2673
Lsp1109I	GCAGC	4 cut(s)	297, 559, 2305, 2989
LweI	GCATC	7 cut(s)	508, 780, 2056, 2365, 2397, 2734, 2761
MaeIII	GTNAC	7 cut(s)	626, 740, 1121, 1130, 1676, 1769, 2914
MalI	GATC	8 cut(s)	7, 429, 981, 1581, 1647, 1710, 2166, 2404
MbiI	CCGCTC	1 cut(s)	2277
MboI	GATC	8 cut(s)	5, 427, 979, 1579, 1645, 1708, 2164, 2402
MboII	GAAGA	8 cut(s)	113, 367, 467, 479, 710, 1210, 1415, 2470
MfeI	CAATTG	2 cut(s)	1835, 3114
MflI	RGATCY	3 cut(s)	1645, 1708, 2402
MhlI	GDGCHC	5 cut(s)	786, 887, 1551, 2527, 2678
MlyI	GAGTC	5 cut(s)	1368, 1742, 1882, 2498, 2837
MmeI	TCCRAC	5 cut(s)	215, 822, 1059, 1997, 3092
Mph1103I	ATGCAT	2 cut(s)	1995, 2727
MroI	TCCGGA	2 cut(s)	895, 1025
MroXI	GAANNNNTTC	2 cut(s)	766, 2462
MslI	CAYNNNNRTG	3 cut(s)	504, 1474, 2681
MspA1I	CMGCKG	2 cut(s)	107, 2980
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	2 cut(s)	896, 1026
MspR9I	CCNGG	2 cut(s)	175, 3145
MunI	CAATTG	2 cut(s)	1835, 3114
MvaI	CCWGG	2 cut(s)	175, 3145
MvnI	CGCG	1 cut(s)	2865
MwoI	GCNNNNNNNGC	4 cut(s)	790, 2283, 3110, 3154
NcoI	CCATGG	2 cut(s)	2136, 2241
NdeI	CATATG	1 cut(s)	2875
NdeII	GATC	8 cut(s)	5, 427, 979, 1579, 1645, 1708, 2164, 2402
NheI	GCTAGC	1 cut(s)	3109
NlaIV	GGNNCC	8 cut(s)	1052, 1102, 1174, 1411, 1966, 2037, 2443, 2821
NmeAIII	GCCGAG	1 cut(s)	1530
NmuCI	GTSAC	3 cut(s)	1121, 1676, 1769
NsiI	ATGCAT	2 cut(s)	1995, 2727
NspI	RCATGY	2 cut(s)	45, 1729
OliI	CACNNNNGTG	2 cut(s)	1474, 2681
PaeI	GCATGC	1 cut(s)	45
PagI	TCATGA	1 cut(s)	2728
PciI	ACATGT	1 cut(s)	1725
PciSI	GCTCTTC	1 cut(s)	126
PdmI	GAANNNNTTC	2 cut(s)	766, 2462
PfeI	GAWTC	7 cut(s)	380, 1029, 1087, 1195, 1609, 1933, 3140
PflMI	CCANNNNNTGG	1 cut(s)	470
PfoI	TCCNGGA	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	312, 549, 2295, 2979
PleI	GAGTC	5 cut(s)	1367, 1742, 1881, 2497, 2837
PpsI	GAGTC	5 cut(s)	1367, 1742, 1881, 2497, 2837
PpuMI	RGGWCCY	1 cut(s)	2036
PscI	ACATGT	1 cut(s)	1725
PshAI	GACNNNNGTC	1 cut(s)	1872
PshBI	ATTAAT	1 cut(s)	3234
Psp124BI	GAGCTC	2 cut(s)	786, 1551
Psp5II	RGGWCCY	1 cut(s)	2036
Psp6I	CCWGG	2 cut(s)	173, 3143
PspEI	GGTNACC	1 cut(s)	2914
PspGI	CCWGG	2 cut(s)	173, 3143
PspN4I	GGNNCC	8 cut(s)	1052, 1102, 1174, 1411, 1966, 2037, 2443, 2821
PspPI	GGNCC	4 cut(s)	1172, 1316, 1964, 2036
PspPPI	RGGWCCY	1 cut(s)	2036
PsuI	RGATCY	3 cut(s)	1645, 1708, 2402
PvuII	CAGCTG	2 cut(s)	107, 2980
RsaI	GTAC	8 cut(s)	307, 578, 860, 866, 1052, 2220, 2443, 2872
RsaNI	GTAC	8 cut(s)	306, 577, 859, 865, 1051, 2219, 2442, 2871
RseI	CAYNNNNRTG	3 cut(s)	504, 1474, 2681
SacI	GAGCTC	2 cut(s)	786, 1551
SapI	GCTCTTC	1 cut(s)	126
SatI	GCNGC	4 cut(s)	311, 548, 2294, 2978
Sau3AI	GATC	8 cut(s)	5, 427, 979, 1579, 1645, 1708, 2164, 2402
Sau96I	GGNCC	4 cut(s)	1172, 1316, 1964, 2036
SchI	GAGTC	5 cut(s)	1368, 1742, 1882, 2498, 2837
ScrFI	CCNGG	2 cut(s)	175, 3145
SduI	GDGCHC	5 cut(s)	786, 887, 1551, 2527, 2678
SfaNI	GCATC	7 cut(s)	508, 780, 2056, 2365, 2397, 2734, 2761
SfcI	CTRYAG	2 cut(s)	649, 1073
SinI	GGWCC	3 cut(s)	1316, 1964, 2036
SmiMI	CAYNNNNRTG	3 cut(s)	504, 1474, 2681
SmlI	CTYRAG	5 cut(s)	534, 551, 1126, 1870, 3168
SmoI	CTYRAG	5 cut(s)	534, 551, 1126, 1870, 3168
SpeI	ACTAGT	1 cut(s)	98
SphI	GCATGC	1 cut(s)	45
SsiI	CCGC	6 cut(s)	824, 1110, 2277, 2823, 2863, 3015
SspI	AATATT	1 cut(s)	2128
SstI	GAGCTC	2 cut(s)	786, 1551
StyD4I	CCNGG	2 cut(s)	173, 3143
StyI	CCWWGG	3 cut(s)	2136, 2230, 2241
TaaI	ACNGT	4 cut(s)	587, 1077, 1460, 2094
TaqI	TCGA	9 cut(s)	378, 869, 2010, 2167, 2373, 2755, 2849, 3005, 3048
TatI	WGTACW	4 cut(s)	576, 858, 864, 2218
TfiI	GAWTC	7 cut(s)	380, 1029, 1087, 1195, 1609, 1933, 3140
TscAI	CASTG	4 cut(s)	1102, 1273, 1890, 2460
TseFI	GTSAC	3 cut(s)	1121, 1676, 1769
TseI	GCWGC	4 cut(s)	310, 547, 2293, 2977
Tsp45I	GTSAC	3 cut(s)	1121, 1676, 1769
TspGWI	ACGGA	1 cut(s)	3036
TspRI	CASTG	4 cut(s)	1102, 1273, 1890, 2460
Van91I	CCANNNNNTGG	1 cut(s)	470
Vha464I	CTTAAG	1 cut(s)	551
VpaK11BI	GGWCC	3 cut(s)	1316, 1964, 2036
VspI	ATTAAT	1 cut(s)	3234
XagI	CCTNNNNNAGG	2 cut(s)	2076, 2615
XbaI	TCTAGA	2 cut(s)	589, 3200
XceI	RCATGY	2 cut(s)	45, 1729
XcmI	CCANNNNNNNNNTGG	1 cut(s)	231
XmiI	GTMKAC	3 cut(s)	1068, 2415, 2575
XmnI	GAANNNNTTC	2 cut(s)	766, 2462
Zsp2I	ATGCAT	2 cut(s)	1995, 2727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.