Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003347.1

Orthogroup ID

OG0006402

Physical Location & Seq

Genomic Coordinates Forward (+)

18075 .. 22161

Gene Structure 4087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003347.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

atgtgttccaaccttctgataacttgtcaacagttgcttcaagtgactcagcttcctgagctatcacaacctactgttgttccttcgcctccttcaaataagactgagaggaaaggagtgattacagggttggcagttgggttggggattactgggtttttgctgatcttggctgtcggagttttgatttttggaggtgggttggtgaagaagaggagaggtacaagaggagatgaagagaagaatcagaatctatataagaatgagaagggagataagagggcgaaggaaatggaagtgagtttgatggctgatgtttcagattgcttggacaagtacagagtgtttggtattgaagatctcagagaagctactaatgggtttggagagaattgcttgattgaagggtctgtttacaaaggaaatattaatggggaggtctatgccatcaagaagatgaagtggaacgcctgtgaggagctcaagatcttacagaaggtaaaccatggcaatttggtgaagctagaaggcttctgcatagacccagaggatgcaaattgctatctagtttatgagtatgtcgaaaatggctctctctattcatggctgcatgaaaacccgaatgaaaagttaagttggaagacaaggctgcatattgctgttgatgtcgcaaatggtctgcaatatattcatgagcacactaggccaagggtcgtgcacaaagacataaagagcagtaatattctcttggactccaacatgagagccaaaatagccaatttcgggcttgcaaagtctggttgcaatgccataacaatgcacattgttggaactcaaggttatattgcccccgagtatctgactgatggggtggtgtcaacaaaaatggatgtgttctcctttggggtagttttactagagcttctttcagggaaagaggccattgatgaagctggaaatgttctgtgggctagcgccggtaggattttggagggaagtgaggaacagaaggcagagaaagtaaagcaatgggtggacaaggagcttttccttgagtcatgctcaatggagagcatagtgaatgctgcgactgttgccattgcctgtttgcataaagatccttctaaaaggccaagtatggtggacattgtttatgccttgtcactcgtgaatcatgccaccgacgctactgctaaggcgactttcattccttctctcacacattcaagcttcacagtattgttgttctgcttttggataatctacctctctgagaaacaaacagattgttttctcattcctcatctggtgttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

438

Amino Acids

48.55

Weight (kDa)

6.04

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02221
malus_domestica	MD13G1203700.v1.1 MD13G1203800.v1.1 MD16G1205900.v1.1
prunus_persica	Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1
pyrus_communis	pycom13g17710 pycom16g17320
rosa_chinensis	RchiOBHm_Chr4g0389541
rosa_laevigata	RLG00000009973 RLG00000009975
rosa_multiflora	Rmu_co8296341.1_g000001 Rmu_co8368025.1_g000001 Rmu_sc0002498.1_g000001 Rmu_sc0003347.1_g000004 Rmu_sc0003582.1_g000008 Rmu_sc0016342.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335500
rosa_rugosa	Rorug03G0323800
rosa_samantha	Rh4AG028200 Rh4BG021400 Rh4CG030100 Rh4DG021900
rosa_wichuraiana	Rw0G017330 Rw4G002050 Rw4G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	1112
AfaI	GTAC	2 cut(s)	223, 338
AfiI	CCNNNNNNNGG	1 cut(s)	783
AgsI	TTSAA	5 cut(s)	41, 96, 356, 404, 1227
AluBI	AGCT	9 cut(s)	52, 61, 371, 481, 523, 922, 953, 1045, 1230
AluI	AGCT	9 cut(s)	52, 61, 371, 481, 523, 922, 953, 1045, 1230
Alw21I	GWGCWC	3 cut(s)	483, 699, 720
Alw44I	GTGCAC	1 cut(s)	716
AlwI	GGATC	1 cut(s)	1112
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	3 cut(s)	704, 939, 1130
ApaLI	GTGCAC	1 cut(s)	716
ApeKI	GCWGC	3 cut(s)	607, 649, 1085
AseI	ATTAAT	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	977
AsuHPI	GGTGA	2 cut(s)	217, 529
AsuNHI	GCTAGC	1 cut(s)	971
AvaI	CYCGRG	1 cut(s)	851
BaeGI	GKGCMC	1 cut(s)	720
BanII	GRGCYC	1 cut(s)	483
BauI	CACGAG	1 cut(s)	1166
BbsI	GAAGAC	1 cut(s)	647
Bbv12I	GWGCWC	3 cut(s)	483, 699, 720
BbvI	GCAGC	3 cut(s)	594, 636, 1072
BccI	CCATC	3 cut(s)	301, 455, 860
BcgI	CGANNNNNNTGC	2 cut(s)	1172, 1206
BfaI	CTAG	5 cut(s)	524, 566, 702, 917, 972
BfoI	RGCGCY	1 cut(s)	978
BglII	AGATCT	2 cut(s)	358, 486
BisI	GCNGC	3 cut(s)	608, 650, 1086
BlsI	GCNGC	3 cut(s)	609, 651, 1087
BmeT110I	CYCGRG	1 cut(s)	851
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	541
BmtI	GCTAGC	1 cut(s)	975
BmuI	ACTGGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	647
BplI	GAGNNNNNCTC	2 cut(s)	1046, 1078
Bpu10I	CCTNAGC	2 cut(s)	57, 1194
BpuEI	CTTGAG	3 cut(s)	467, 819, 1073
BsaJI	CCNNGG	2 cut(s)	505, 707
Bsc4I	CCNNNNNNNGG	1 cut(s)	783
Bse118I	RCCGGY	1 cut(s)	977
Bse1I	ACTGG	1 cut(s)	157
Bse3DI	GCAATG	3 cut(s)	811, 1034, 1098
BseDI	CCNNGG	2 cut(s)	505, 707
BseGI	GGATG	2 cut(s)	556, 895
BseLI	CCNNNNNNNGG	1 cut(s)	783
BseMI	GCAATG	3 cut(s)	811, 1034, 1098
BseMII	CTCAG	5 cut(s)	48, 62, 96, 376, 1263
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	3 cut(s)	229, 243, 491
BseSI	GKGCMC	1 cut(s)	720
BseXI	GCAGC	3 cut(s)	594, 636, 1072
BshFI	GGCC	3 cut(s)	706, 941, 1132
BsiHKAI	GWGCWC	3 cut(s)	483, 699, 720
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	1 cut(s)	978
BslI	CCNNNNNNNGG	1 cut(s)	783
BsmI	GAATGC	1 cut(s)	1087
BsnI	GGCC	3 cut(s)	706, 941, 1132
BsoBI	CYCGRG	1 cut(s)	851
Bsp1286I	GDGCHC	3 cut(s)	483, 699, 720
Bsp143I	GATC	4 cut(s)	165, 358, 486, 1117
Bsp19I	CCATGG	1 cut(s)	505
BspANI	GGCC	3 cut(s)	706, 941, 1132
BspCNI	CTCAG	5 cut(s)	49, 61, 97, 375, 1264
BspHI	TCATGA	1 cut(s)	691
BspOI	GCTAGC	1 cut(s)	975
BspPI	GGATC	1 cut(s)	1112
BsrDI	GCAATG	3 cut(s)	811, 1034, 1098
BsrFI	RCCGGY	1 cut(s)	977
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	977
BssECI	CCNNGG	2 cut(s)	505, 707
BssMI	GATC	4 cut(s)	165, 358, 486, 1117
BssSI	CACGAG	1 cut(s)	1166
BssT1I	CCWWGG	2 cut(s)	505, 707
Bst2BI	CACGAG	1 cut(s)	1166
Bst4CI	ACNGT	4 cut(s)	33, 76, 1093, 1237
Bst6I	CTCTTC	2 cut(s)	206, 231
BstC8I	GCNNGC	2 cut(s)	789, 973
BstDEI	CTNAG	6 cut(s)	48, 57, 105, 362, 1194, 1272
BstDSI	CCRYGG	1 cut(s)	505
BstF5I	GGATG	2 cut(s)	556, 895
BstH2I	RGCGCY	1 cut(s)	978
BstHHI	GCGC	1 cut(s)	977
BstKTI	GATC	4 cut(s)	168, 361, 489, 1120
BstMBI	GATC	4 cut(s)	165, 358, 486, 1117
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 703, 773, 1094, 1184
BstSLI	GKGCMC	1 cut(s)	720
BstV1I	GCAGC	3 cut(s)	594, 636, 1072
BstV2I	GAAGAC	1 cut(s)	647
BstX2I	RGATCY	3 cut(s)	358, 486, 1117
BstYI	RGATCY	3 cut(s)	358, 486, 1117
BsuRI	GGCC	3 cut(s)	706, 941, 1132
BtgI	CCRYGG	1 cut(s)	505
BtsCI	GGATG	2 cut(s)	556, 895
Cac8I	GCNNGC	2 cut(s)	789, 973
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	1 cut(s)	977
Cfr10I	RCCGGY	1 cut(s)	977
CseI	GACGC	1 cut(s)	1193
Csp6I	GTAC	2 cut(s)	222, 337
CspCI	CAANNNNNGTGG	2 cut(s)	1122, 1157
CviAII	CATG	7 cut(s)	506, 603, 611, 692, 760, 1059, 1175
CviQI	GTAC	2 cut(s)	222, 337
DdeI	CTNAG	6 cut(s)	48, 57, 105, 362, 1194, 1272
DpnI	GATC	4 cut(s)	167, 360, 488, 1119
DpnII	GATC	4 cut(s)	165, 358, 486, 1117
Eam1104I	CTCTTC	2 cut(s)	206, 231
EarI	CTCTTC	2 cut(s)	206, 231
Ecl136II	GAGCTC	1 cut(s)	481
Eco130I	CCWWGG	2 cut(s)	505, 707
Eco24I	GRGCYC	1 cut(s)	483
Eco53kI	GAGCTC	1 cut(s)	481
Eco88I	CYCGRG	1 cut(s)	851
EcoICRI	GAGCTC	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	505, 707
EcoT38I	GRGCYC	1 cut(s)	483
ErhI	CCWWGG	2 cut(s)	505, 707
FaeI	CATG	7 cut(s)	509, 606, 614, 695, 763, 1062, 1178
FatI	CATG	7 cut(s)	505, 602, 610, 691, 759, 1058, 1174
Fnu4HI	GCNGC	3 cut(s)	608, 650, 1086
FokI	GGATG	2 cut(s)	563, 902
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	3 cut(s)	608, 650, 1086
FspBI	CTAG	5 cut(s)	524, 566, 702, 917, 972
GlaI	GCGC	1 cut(s)	976
GluI	GCNGC	3 cut(s)	608, 650, 1086
HaeII	RGCGCY	1 cut(s)	978
HaeIII	GGCC	3 cut(s)	706, 941, 1132
HapII	CCGG	1 cut(s)	978
HgaI	GACGC	1 cut(s)	1193
HhaI	GCGC	1 cut(s)	977
Hin1II	CATG	7 cut(s)	509, 606, 614, 695, 763, 1062, 1178
Hin6I	GCGC	1 cut(s)	975
HinP1I	GCGC	1 cut(s)	975
HincII	GTYRAC	2 cut(s)	29, 879
HindII	GTYRAC	2 cut(s)	29, 879
HindIII	AAGCTT	1 cut(s)	1228
HinfI	GANTC	6 cut(s)	46, 244, 250, 752, 1055, 1171
HpaII	CCGG	1 cut(s)	978
HphI	GGTGA	2 cut(s)	217, 529
Hpy166II	GTNNAC	7 cut(s)	29, 415, 502, 718, 879, 1036, 1144
Hpy188I	TCNGA	8 cut(s)	18, 179, 249, 322, 365, 861, 1273, 1316
Hpy188III	TCNNGA	5 cut(s)	56, 451, 484, 692, 1168
Hpy8I	GTNNAC	7 cut(s)	29, 415, 502, 718, 879, 1036, 1144
Hpy99I	CGWCG	1 cut(s)	1187
HpyCH4III	ACNGT	4 cut(s)	33, 76, 1093, 1237
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 703, 773, 1094, 1184
HpyF3I	CTNAG	6 cut(s)	48, 57, 105, 362, 1194, 1272
Hsp92II	CATG	7 cut(s)	509, 606, 614, 695, 763, 1062, 1178
HspAI	GCGC	1 cut(s)	975
Kzo9I	GATC	4 cut(s)	165, 358, 486, 1117
LmnI	GCTCC	2 cut(s)	478, 1042
Lsp1109I	GCAGC	3 cut(s)	594, 636, 1072
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	5 cut(s)	524, 566, 702, 917, 972
MaeIII	GTNAC	2 cut(s)	43, 1161
MalI	GATC	4 cut(s)	167, 360, 488, 1119
MboI	GATC	4 cut(s)	165, 358, 486, 1117
MboII	GAAGA	7 cut(s)	220, 223, 248, 253, 368, 466, 652
MflI	RGATCY	3 cut(s)	358, 486, 1117
MhlI	GDGCHC	3 cut(s)	483, 699, 720
MluCI	AATT	4 cut(s)	391, 511, 556, 778
MlyI	GAGTC	3 cut(s)	40, 746, 1064
MmeI	TCCRAC	5 cut(s)	33, 157, 617, 780, 808
MseI	TTAA	2 cut(s)	429, 632
MslI	CAYNNNNRTG	1 cut(s)	815
MspI	CCGG	1 cut(s)	978
Mva1269I	GAATGC	1 cut(s)	1087
MwoI	GCNNNNNNNGC	5 cut(s)	58, 703, 773, 1094, 1184
NcoI	CCATGG	1 cut(s)	505
NdeII	GATC	4 cut(s)	165, 358, 486, 1117
NheI	GCTAGC	1 cut(s)	971
NlaIII	CATG	7 cut(s)	509, 606, 614, 695, 763, 1062, 1178
NmuCI	GTSAC	2 cut(s)	43, 1161
PagI	TCATGA	1 cut(s)	691
PctI	GAATGC	1 cut(s)	1087
PfeI	GAWTC	3 cut(s)	244, 250, 1171
PkrI	GCNGC	3 cut(s)	609, 651, 1087
PleI	GAGTC	3 cut(s)	40, 746, 1063
PpsI	GAGTC	3 cut(s)	40, 746, 1063
PshBI	ATTAAT	1 cut(s)	429
Psp124BI	GAGCTC	1 cut(s)	483
PsuI	RGATCY	3 cut(s)	358, 486, 1117
RsaI	GTAC	2 cut(s)	223, 338
RsaNI	GTAC	2 cut(s)	222, 337
RseI	CAYNNNNRTG	1 cut(s)	815
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	429, 632
SatI	GCNGC	3 cut(s)	608, 650, 1086
Sau3AI	GATC	4 cut(s)	165, 358, 486, 1117
SchI	GAGTC	3 cut(s)	40, 746, 1064
SduI	GDGCHC	3 cut(s)	483, 699, 720
SfaNI	GCATC	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	815
SmlI	CTYRAG	3 cut(s)	482, 834, 1052
SmoI	CTYRAG	3 cut(s)	482, 834, 1052
Sse9I	AATT	4 cut(s)	391, 511, 556, 778
SspI	AATATT	2 cut(s)	427, 742
SspMI	CTAG	5 cut(s)	524, 566, 702, 917, 972
SstI	GAGCTC	1 cut(s)	483
StyI	CCWWGG	2 cut(s)	505, 707
TaaI	ACNGT	4 cut(s)	33, 76, 1093, 1237
TaqI	TCGA	1 cut(s)	582
TasI	AATT	4 cut(s)	391, 511, 556, 778
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	244, 250, 1171
Tru1I	TTAA	2 cut(s)	429, 632
Tru9I	TTAA	2 cut(s)	429, 632
TseFI	GTSAC	2 cut(s)	43, 1161
TseI	GCWGC	3 cut(s)	607, 649, 1085
Tsp45I	GTSAC	2 cut(s)	43, 1161
TspDTI	ATGAA	8 cut(s)	249, 473, 591, 627, 639, 680, 963, 1195
VneI	GTGCAC	1 cut(s)	716
VspI	ATTAAT	1 cut(s)	429
XspI	CTAG	5 cut(s)	524, 566, 702, 917, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.