Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8296341.1

Orthogroup ID

OG0006402

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 818

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8296341.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

gtaaaccatggcaatttggtgaagctagaaggcttctgcatagacccagaggatgcaaattgctatctagtttatgagtatgtcgaaaatggctctctctattcatggctgcatgaaaacccgaatgaaaagttaagttggaagacaaggctgcatattgctgttgatgtcgcaaatggtctgcaatatattcatgagcacactaggccaagggtcgtgcacaaagacataaagagcagtaatattctcttggactccaacatgagagccaaaatagccaatttcgggcttgcaaagtctggttgcaatgccataacaatgcacattgttggaactcaaggttatattgcccccgagtatctgactgatggggtggtgtcaacaaaaatggatgtgttctcctttggggtagttttactagagcttctttcagggaaagaggccattgatgaagctggaaatgttctgtgggctagcgccggtaggattttggagggaagtgaggaacagaaggcagagaaagtaaagcaatgggtggacaaggagcttttccttgagtcatgctcaatggagagcatagtgaatgctgcgactgttgccattgcctgtttgcataaagatccttctaaaaggccaagtatggtggacattgtttatgccttgtgtaagagcgatgaattgtttttcgatatctcagacgatggatcatcagctcccccagtaagagcacggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

244

Amino Acids

27.02

Weight (kDa)

5.28

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02221
malus_domestica	MD13G1203700.v1.1 MD13G1203800.v1.1 MD16G1205900.v1.1
prunus_persica	Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1
pyrus_communis	pycom13g17710 pycom16g17320
rosa_chinensis	RchiOBHm_Chr4g0389541
rosa_laevigata	RLG00000009973 RLG00000009975
rosa_multiflora	Rmu_co8296341.1_g000001 Rmu_co8368025.1_g000001 Rmu_sc0002498.1_g000001 Rmu_sc0003347.1_g000004 Rmu_sc0003582.1_g000008 Rmu_sc0016342.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335500
rosa_rugosa	Rorug03G0323800
rosa_samantha	Rh4AG028200 Rh4BG021400 Rh4CG030100 Rh4DG021900
rosa_wichuraiana	Rw0G017330 Rw4G002050 Rw4G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	614, 712
AfiI	CCNNNNNNNGG	1 cut(s)	285
AluBI	AGCT	5 cut(s)	25, 424, 455, 547, 713
AluI	AGCT	5 cut(s)	25, 424, 455, 547, 713
Alw21I	GWGCWC	3 cut(s)	201, 222, 730
Alw44I	GTGCAC	1 cut(s)	218
AlwI	GGATC	2 cut(s)	614, 712
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	3 cut(s)	206, 441, 632
ApaLI	GTGCAC	1 cut(s)	218
ApeKI	GCWGC	3 cut(s)	109, 151, 587
AspLEI	GCGC	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	473
AvaI	CYCGRG	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	3 cut(s)	201, 222, 730
BbvI	GCAGC	3 cut(s)	96, 138, 574
BccI	CCATC	2 cut(s)	362, 695
BfaI	CTAG	5 cut(s)	26, 68, 204, 419, 474
BfoI	RGCGCY	1 cut(s)	480
BisI	GCNGC	3 cut(s)	110, 152, 588
BlsI	GCNGC	3 cut(s)	111, 153, 589
BmeT110I	CYCGRG	1 cut(s)	353
BmrI	ACTGGG	1 cut(s)	713
BmsI	GCATC	1 cut(s)	43
BmtI	GCTAGC	1 cut(s)	477
BmuI	ACTGGG	1 cut(s)	713
BpiI	GAAGAC	1 cut(s)	149
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpuEI	CTTGAG	2 cut(s)	321, 575
BsaJI	CCNNGG	2 cut(s)	7, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	1 cut(s)	719
Bse3DI	GCAATG	3 cut(s)	313, 536, 600
BseDI	CCNNGG	2 cut(s)	7, 209
BseGI	GGATG	2 cut(s)	58, 397
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMI	GCAATG	3 cut(s)	313, 536, 600
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	1 cut(s)	719
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	3 cut(s)	96, 138, 574
BshFI	GGCC	3 cut(s)	208, 443, 634
BsiHKAI	GWGCWC	3 cut(s)	201, 222, 730
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	3 cut(s)	208, 443, 634
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	3 cut(s)	201, 222, 730
Bsp143I	GATC	2 cut(s)	619, 704
Bsp19I	CCATGG	1 cut(s)	7
BspANI	GGCC	3 cut(s)	208, 443, 634
BspCNI	CTCAG	1 cut(s)	707
BspHI	TCATGA	1 cut(s)	193
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	614, 712
BsrDI	GCAATG	3 cut(s)	313, 536, 600
BsrFI	RCCGGY	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	719
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	2 cut(s)	7, 209
BssMI	GATC	2 cut(s)	619, 704
BssT1I	CCWWGG	2 cut(s)	7, 209
Bst4CI	ACNGT	2 cut(s)	595, 732
BstC8I	GCNNGC	2 cut(s)	291, 475
BstDEI	CTNAG	1 cut(s)	694
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	58, 397
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	2 cut(s)	622, 707
BstMBI	GATC	2 cut(s)	619, 704
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 275, 596
BstSLI	GKGCMC	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	96, 138, 574
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	3 cut(s)	208, 443, 634
BtgI	CCRYGG	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	687
BtsCI	GGATG	2 cut(s)	58, 397
Cac8I	GCNNGC	2 cut(s)	291, 475
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	1 cut(s)	479
Cfr10I	RCCGGY	1 cut(s)	479
CspCI	CAANNNNNGTGG	2 cut(s)	624, 659
CviAII	CATG	6 cut(s)	8, 105, 113, 194, 262, 561
DdeI	CTNAG	1 cut(s)	694
DpnI	GATC	2 cut(s)	621, 706
DpnII	GATC	2 cut(s)	619, 704
Eco130I	CCWWGG	2 cut(s)	7, 209
Eco32I	GATATC	1 cut(s)	691
Eco88I	CYCGRG	1 cut(s)	353
EcoRV	GATATC	1 cut(s)	691
EcoT14I	CCWWGG	2 cut(s)	7, 209
ErhI	CCWWGG	2 cut(s)	7, 209
FaeI	CATG	6 cut(s)	11, 108, 116, 197, 265, 564
FatI	CATG	6 cut(s)	7, 104, 112, 193, 261, 560
Fnu4HI	GCNGC	3 cut(s)	110, 152, 588
FokI	GGATG	2 cut(s)	65, 404
Fsp4HI	GCNGC	3 cut(s)	110, 152, 588
FspBI	CTAG	5 cut(s)	26, 68, 204, 419, 474
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	3 cut(s)	110, 152, 588
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	208, 443, 634
HapII	CCGG	1 cut(s)	480
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	6 cut(s)	11, 108, 116, 197, 265, 564
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	2 cut(s)	254, 557
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	5 cut(s)	4, 220, 381, 538, 646
Hpy188I	TCNGA	2 cut(s)	363, 697
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	5 cut(s)	4, 220, 381, 538, 646
HpyAV	CCTTC	3 cut(s)	23, 505, 633
HpyCH4III	ACNGT	2 cut(s)	595, 732
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 275, 596
HpyF3I	CTNAG	1 cut(s)	694
Hsp92II	CATG	6 cut(s)	11, 108, 116, 197, 265, 564
HspAI	GCGC	1 cut(s)	477
Kzo9I	GATC	2 cut(s)	619, 704
LmnI	GCTCC	2 cut(s)	544, 718
LpnPI	CCDG	6 cut(s)	60, 285, 417, 441, 493, 619
Lsp1109I	GCAGC	3 cut(s)	96, 138, 574
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	5 cut(s)	26, 68, 204, 419, 474
MalI	GATC	2 cut(s)	621, 706
MboI	GATC	2 cut(s)	619, 704
MboII	GAAGA	1 cut(s)	154
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	3 cut(s)	201, 222, 730
MluCI	AATT	4 cut(s)	13, 58, 280, 677
MlyI	GAGTC	2 cut(s)	248, 566
MmeI	TCCRAC	3 cut(s)	119, 282, 310
MnlI	CCTC	4 cut(s)	43, 433, 487, 496
MseI	TTAA	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	1 cut(s)	480
Mva1269I	GAATGC	1 cut(s)	589
MwoI	GCNNNNNNNGC	3 cut(s)	205, 275, 596
NcoI	CCATGG	1 cut(s)	7
NdeII	GATC	2 cut(s)	619, 704
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	6 cut(s)	11, 108, 116, 197, 265, 564
PagI	TCATGA	1 cut(s)	193
PctI	GAATGC	1 cut(s)	589
PkrI	GCNGC	3 cut(s)	111, 153, 589
PleI	GAGTC	2 cut(s)	248, 565
PpsI	GAGTC	2 cut(s)	248, 565
PsuI	RGATCY	1 cut(s)	619
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	3 cut(s)	110, 152, 588
Sau3AI	GATC	2 cut(s)	619, 704
SchI	GAGTC	2 cut(s)	248, 566
SduI	GDGCHC	3 cut(s)	201, 222, 730
SetI	ASST	6 cut(s)	27, 343, 426, 457, 549, 715
SfaNI	GCATC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	336, 554
SmoI	CTYRAG	2 cut(s)	336, 554
Sse9I	AATT	4 cut(s)	13, 58, 280, 677
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	5 cut(s)	26, 68, 204, 419, 474
StyI	CCWWGG	2 cut(s)	7, 209
TaaI	ACNGT	2 cut(s)	595, 732
TaqI	TCGA	2 cut(s)	84, 687
TasI	AATT	4 cut(s)	13, 58, 280, 677
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TseI	GCWGC	3 cut(s)	109, 151, 587
TspDTI	ATGAA	6 cut(s)	93, 129, 141, 182, 465, 690
VneI	GTGCAC	1 cut(s)	218
XspI	CTAG	5 cut(s)	26, 68, 204, 419, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.