RLG00000009975

lysM domain receptor-like kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
61434992 .. 61437602
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009975

Sequence Viewer

Length: 1899 bp
ATGAGAAGCTCCAAACCCAAGTGTGTCTGCTCTCTCTTCCTGTTCTTTCTGTGCTTCCATCTCCTTCTTCACCATTCACAAGCTCAAGGAGGTCCACCAGCTGATGGCTATACCTGCTCAATCAATGAGACCACCACCAATCCATGCCAAGCCTATGCCTATTACAGAGCCATGGCTCCTGACTTTCTTGACCTGGCCTCCATAGGTGACCTCTTCTCAGTGAGCCGCCTCATGATCTCCAAACCCAGCAACATATCTTCCCCAACTTCACCTCTGGTCCAAGACCAACCCCTCTTTGTTCCTCTATCTTGTTCCTGCAACTCGGTCAACACAAGCACGCACATCTCCTATGCCAATATCTCATACACAATCGTGTTAGGTGACACTTTTTTACGACTCTCCACCCTGAGATTCCAAAACCTCACAACCTGGCATTCTGTGGTGCTTGTGAACCCTACTCTTGTACCCACCAACCTTACAATTGGGGTAACTGCATATTTCCCAATCTTTTGCAAGTGCCCCACCAAAACCCAGTCGCAAAGCAACGTCAGTTATCTGGTCTCCTATGTGTTCCAACCTTCTGATACCTTGTCAACAGTTGCTTCAAGGTTTGGGGTCCAAACAAACTCTATAGTTGAAGTTAATGGCAATAATACTCAGCCTTTTGATACCATATTCATTCCAGTGTCTCAGCTTCCTGAGCTATCACAACCTACTGTTTCTCCTTCACCTTCACCTTCTTCACCTCCTTCACCTCCTTCAAATAAGACTGAGAGGAAAGGAGTGATTACAGGGTTGGCAGTGGGGTTGGGGATCACTGGGTTTTTGTTGATTTTGGTCCTGGGGGTTTTCATTTTGGGAGGTGGGTTGGTGAAGAAGAGGAGAGGTATAAGAAGAGATGAAGAGAAGAATCTGAATCTATATAAGAATGAGACGGGAGATAAGAGGGCGAAGGAAATGGAAGTGAGTTTGATGGCTGATGTTTCAGATTGCTTGGACAAGTACAGAGTGTTTGGTGTTGAAGAACTCAGAGAAGCTACTAATGGGTTTGGAGAGAATTGCTTGATTGAAGGGTCTGTTTACAAAGGAAGTATTAATGGGGAGGTCTATGCCATCAAGAAGATGAAGTGGAACGCCTGTGAGGAGCTCAAGATCTTACAGAAGGTAAACCATGGCAATTTGGTGAAGCTAGAAGGCTTCTGCATAGACCCGGAGGATGCAAATTGCTATCTAGTTTACGAGTATGTCGAAAATGGCTCTCTCTATTCATGGCTGCATGAAAACCCGAATGAAAAGTTAAGTTGGAAGACAAGGCTGCATATTGCTGCTGATGTCGCAAATGGTCTGCAATATATTCATGAGCACACTAGGCCAAGGGTCGTGCACAAAGACATAAAGAGCAGTAATATTCTCTTGGACTCCAACATGAGAGCCAAAATAGCCAATTTTGGGCTTGCAAAGTCTGGTTGCAATGCCATAACAATGCATATTGTTGGAACTCAAGGTTATATTGCCCCCGAGTATCTAACTGATGGGGTGGTGTCAACAAAAATGGATGTGTTCTCCTTTGGGGTAGTTTTACTAGAGCTTCTTTCAGGGAAGGAGGCCATTGATGAAGCTGGAAATGTTCTGTGGGCTAGTGCCGGTAGGATTTTGGAGGGAAGTGAGGAAGAGAAGGCAGAGAAAGTAAAGCAATGGGTGGACAAGGAGCTTTTCCTTGACTCATGCTCAATGGATAGCATAGTGAATGTTGCTACTGTTGCCATTGCCTGTTTGCACAAAGATCCTTCTAAAAGGCCAAGTATGGTGGACATTGTTTATGGCTTGTGTAAGAGCGATGAATTGTTTTTCGATATCTCAGACGATGGATCATCAGCTCCCCCAGTAAGAGCACGGTAA

Protein Analysis

633

Amino Acids

69.49

Weight (kDa)

6.05

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM1_NFP_LYK PF23446 49 - 106 1.8e-17 NFP/LYK LysM1 domain
LysM2_NFP PF23457 116 - 170 9.7e-21 NFP LysM2 domain
LysM3_NFP PF23462 185 - 229 2.7e-07 NFP LysM3 domain
Pkinase PF00069 359 - 606 1e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 376 - 606 7.2e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 104
AciI CCGC 1 cut(s) 226
AclWI GGATC 3 cut(s) 821, 1778, 1876
AfaI GTAC 2 cut(s) 465, 1004
AfiI CCNNNNNNNGG 2 cut(s) 104, 1449
AgsI TTSAA 5 cut(s) 606, 638, 762, 1022, 1070
AjnI CCWGG 3 cut(s) 192, 428, 840
AleI CACNNNNGTG 1 cut(s) 371
Alw21I GWGCWC 4 cut(s) 1149, 1365, 1386, 1894
Alw26I GTCTC 4 cut(s) 122, 565, 693, 926
Alw44I GTGCAC 1 cut(s) 1382
AlwI GGATC 3 cut(s) 821, 1778, 1876
Ama87I CYCGRG 1 cut(s) 1517
AoxI GGCC 4 cut(s) 195, 1370, 1605, 1796
ApaLI GTGCAC 1 cut(s) 1382
ApeKI GCWGC 3 cut(s) 1273, 1315, 1325
AseI ATTAAT 1 cut(s) 1095
AspS9I GGNCC 4 cut(s) 92, 277, 616, 838
AsuC2I CCSGG 1 cut(s) 1211
AvaI CYCGRG 1 cut(s) 1517
AvaII GGWCC 4 cut(s) 92, 277, 616, 838
BaeGI GKGCMC 2 cut(s) 521, 1386
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BanII GRGCYC 1 cut(s) 1149
BbsI GAAGAC 1 cut(s) 1313
Bbv12I GWGCWC 4 cut(s) 1149, 1365, 1386, 1894
BbvI GCAGC 3 cut(s) 1260, 1302, 1312
BccI CCATC 6 cut(s) 66, 98, 967, 1121, 1526, 1859
BciT130I CCWGG 3 cut(s) 194, 430, 842
BcnI CCSGG 1 cut(s) 1211
BcoDI GTCTC 4 cut(s) 122, 565, 693, 926
BfaI CTAG 5 cut(s) 1190, 1232, 1368, 1583, 1638
BfmI CTRYAG 1 cut(s) 630
BfuAI ACCTGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 1152
BisI GCNGC 4 cut(s) 226, 1274, 1316, 1326
BlsI GCNGC 4 cut(s) 227, 1275, 1317, 1327
Bme1390I CCNGG 4 cut(s) 194, 430, 842, 1211
Bme18I GGWCC 4 cut(s) 92, 277, 616, 838
BmeT110I CYCGRG 1 cut(s) 1517
BmgT120I GGNCC 4 cut(s) 92, 277, 616, 838
BmiI GGNNCC 2 cut(s) 177, 617
BmrFI CCNGG 4 cut(s) 194, 430, 842, 1211
BmrI ACTGGG 3 cut(s) 526, 828, 1877
BmsI GCATC 1 cut(s) 1207
BmuI ACTGGG 3 cut(s) 526, 828, 1877
BpiI GAAGAC 1 cut(s) 1313
Bpu10I CCTNAGC 1 cut(s) 699
BpuEI CTTGAG 3 cut(s) 69, 1133, 1485
BpuMI CCSGG 1 cut(s) 1211
BsaI GGTCTC 2 cut(s) 122, 565
BsaJI CCNNGG 4 cut(s) 171, 841, 1171, 1373
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 706, 736
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 1449
Bse118I RCCGGY 1 cut(s) 1643
Bse1I ACTGG 4 cut(s) 532, 683, 823, 1883
Bse3DI GCAATG 3 cut(s) 1477, 1700, 1764
BseBI CCWGG 3 cut(s) 194, 430, 842
BseDI CCNNGG 4 cut(s) 171, 841, 1171, 1373
BseGI GGATG 2 cut(s) 1222, 1561
BseLI CCNNNNNNNGG 2 cut(s) 104, 1449
BseMI GCAATG 3 cut(s) 1477, 1700, 1764
BseMII CTCAG 8 cut(s) 231, 398, 671, 690, 704, 762, 1042, 1872
BseNI ACTGG 4 cut(s) 532, 683, 823, 1883
BseRI GAGGAG 2 cut(s) 895, 1157
BseSI GKGCMC 2 cut(s) 521, 1386
BseXI GCAGC 3 cut(s) 1260, 1302, 1312
BseYI CCCAGC 1 cut(s) 245
BshFI GGCC 4 cut(s) 197, 1372, 1607, 1798
BsiHKAI GWGCWC 4 cut(s) 1149, 1365, 1386, 1894
BsiHKCI CYCGRG 1 cut(s) 1517
BsiSI CCGG 2 cut(s) 1211, 1644
BslI CCNNNNNNNGG 2 cut(s) 104, 1449
BsmAI GTCTC 4 cut(s) 122, 565, 693, 926
BsmBI CGTCTC 1 cut(s) 926
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 4 cut(s) 197, 1372, 1607, 1798
Bso31I GGTCTC 2 cut(s) 122, 565
BsoBI CYCGRG 1 cut(s) 1517
Bsp1286I GDGCHC 5 cut(s) 521, 1149, 1365, 1386, 1894
Bsp143I GATC 5 cut(s) 234, 813, 1152, 1783, 1868
Bsp19I CCATGG 2 cut(s) 171, 1171
BspACI CCGC 1 cut(s) 226
BspANI GGCC 4 cut(s) 197, 1372, 1607, 1798
BspCNI CTCAG 8 cut(s) 230, 399, 670, 691, 703, 763, 1041, 1871
BspHI TCATGA 2 cut(s) 231, 1357
BspLI GGNNCC 2 cut(s) 177, 617
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 3 cut(s) 821, 1778, 1876
BspTNI GGTCTC 2 cut(s) 122, 565
BsrDI GCAATG 3 cut(s) 1477, 1700, 1764
BsrFI RCCGGY 1 cut(s) 1643
BsrI ACTGG 4 cut(s) 532, 683, 823, 1883
BssAI RCCGGY 1 cut(s) 1643
BssECI CCNNGG 4 cut(s) 171, 841, 1171, 1373
BssMI GATC 5 cut(s) 234, 813, 1152, 1783, 1868
BssT1I CCWWGG 3 cut(s) 171, 1171, 1373
Bst2UI CCWGG 3 cut(s) 194, 430, 842
Bst4CI ACNGT 4 cut(s) 598, 718, 1759, 1896
Bst6I CTCTTC 6 cut(s) 41, 218, 872, 889, 897, 1665
BstC8I GCNNGC 2 cut(s) 338, 1455
BstDEI CTNAG 8 cut(s) 217, 407, 657, 690, 699, 771, 1028, 1858
BstDSI CCRYGG 2 cut(s) 171, 1171
BstEII GGTNACC 1 cut(s) 206
BstF5I GGATG 2 cut(s) 1222, 1561
BstKTI GATC 5 cut(s) 237, 816, 1155, 1786, 1871
BstMAI GTCTC 4 cut(s) 122, 565, 693, 926
BstMBI GATC 5 cut(s) 234, 813, 1152, 1783, 1868
BstMWI GCNNNNNNNGC 6 cut(s) 114, 700, 1334, 1369, 1439, 1760
BstNI CCWGG 3 cut(s) 194, 430, 842
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 4 cut(s) 192, 428, 840, 1209
BstSFI CTRYAG 1 cut(s) 630
BstSLI GKGCMC 2 cut(s) 521, 1386
BstV1I GCAGC 3 cut(s) 1260, 1302, 1312
BstV2I GAAGAC 1 cut(s) 1313
BstX2I RGATCY 2 cut(s) 1152, 1783
BstYI RGATCY 2 cut(s) 1152, 1783
BsuRI GGCC 4 cut(s) 197, 1372, 1607, 1798
BtgI CCRYGG 2 cut(s) 171, 1171
BtgZI GCGATG 1 cut(s) 1851
BtsCI GGATG 2 cut(s) 1222, 1561
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 4 cut(s) 225, 690, 807, 816
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 338, 1455
CciI TCATGA 2 cut(s) 231, 1357
Cfr10I RCCGGY 1 cut(s) 1643
Cfr13I GGNCC 4 cut(s) 92, 277, 616, 838
Csp6I GTAC 2 cut(s) 464, 1003
CspCI CAANNNNNGTGG 2 cut(s) 1788, 1823
CviAII CATG 9 cut(s) 144, 172, 232, 1172, 1269, 1277, 1358, 1426, 1725
CviQI GTAC 2 cut(s) 464, 1003
DdeI CTNAG 8 cut(s) 217, 407, 657, 690, 699, 771, 1028, 1858
DpnI GATC 5 cut(s) 236, 815, 1154, 1785, 1870
DpnII GATC 5 cut(s) 234, 813, 1152, 1783, 1868
Eam1104I CTCTTC 6 cut(s) 41, 218, 872, 889, 897, 1665
EarI CTCTTC 6 cut(s) 41, 218, 872, 889, 897, 1665
Ecl136II GAGCTC 1 cut(s) 1147
Eco130I CCWWGG 3 cut(s) 171, 1171, 1373
Eco24I GRGCYC 1 cut(s) 1149
Eco31I GGTCTC 2 cut(s) 122, 565
Eco32I GATATC 1 cut(s) 1855
Eco47I GGWCC 4 cut(s) 92, 277, 616, 838
Eco53kI GAGCTC 1 cut(s) 1147
Eco88I CYCGRG 1 cut(s) 1517
Eco91I GGTNACC 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 1147
EcoO65I GGTNACC 1 cut(s) 206
EcoRII CCWGG 3 cut(s) 192, 428, 840
EcoRV GATATC 1 cut(s) 1855
EcoT14I CCWWGG 3 cut(s) 171, 1171, 1373
EcoT22I ATGCAT 1 cut(s) 1488
EcoT38I GRGCYC 1 cut(s) 1149
ErhI CCWWGG 3 cut(s) 171, 1171, 1373
Esp3I CGTCTC 1 cut(s) 926
FaeI CATG 9 cut(s) 147, 175, 235, 1175, 1272, 1280, 1361, 1429, 1728
FatI CATG 9 cut(s) 143, 171, 231, 1171, 1268, 1276, 1357, 1425, 1724
Fnu4HI GCNGC 4 cut(s) 226, 1274, 1316, 1326
FokI GGATG 2 cut(s) 1229, 1568
FriOI GRGCYC 1 cut(s) 1149
Fsp4HI GCNGC 4 cut(s) 226, 1274, 1316, 1326
FspBI CTAG 5 cut(s) 1190, 1232, 1368, 1583, 1638
GluI GCNGC 4 cut(s) 226, 1274, 1316, 1326
GsaI CCCAGC 1 cut(s) 249
HaeIII GGCC 4 cut(s) 197, 1372, 1607, 1798
HapII CCGG 2 cut(s) 1211, 1644
Hin1II CATG 9 cut(s) 147, 175, 235, 1175, 1272, 1280, 1361, 1429, 1728
HincII GTYRAC 3 cut(s) 328, 594, 1545
HindII GTYRAC 3 cut(s) 328, 594, 1545
HinfI GANTC 6 cut(s) 396, 411, 910, 916, 1418, 1721
HpaII CCGG 2 cut(s) 1211, 1644
Hpy188I TCNGA 5 cut(s) 583, 915, 988, 1031, 1861
Hpy188III TCNNGA 7 cut(s) 179, 188, 232, 698, 1117, 1150, 1358
HpyCH4III ACNGT 4 cut(s) 598, 718, 1759, 1896
HpyCH4IV ACGT 1 cut(s) 546
HpyF10VI GCNNNNNNNGC 6 cut(s) 114, 700, 1334, 1369, 1439, 1760
HpyF3I CTNAG 8 cut(s) 217, 407, 657, 690, 699, 771, 1028, 1858
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 9 cut(s) 147, 175, 235, 1175, 1272, 1280, 1361, 1429, 1728
Kzo9I GATC 5 cut(s) 234, 813, 1152, 1783, 1868
LmnI GCTCC 5 cut(s) 14, 181, 1144, 1708, 1882
Lsp1109I GCAGC 3 cut(s) 1260, 1302, 1312
LweI GCATC 1 cut(s) 1207
MaeI CTAG 5 cut(s) 1190, 1232, 1368, 1583, 1638
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 3 cut(s) 206, 380, 487
MalI GATC 5 cut(s) 236, 815, 1154, 1785, 1870
MboI GATC 5 cut(s) 234, 813, 1152, 1783, 1868
MfeI CAATTG 1 cut(s) 480
MflI RGATCY 2 cut(s) 1152, 1783
MhlI GDGCHC 5 cut(s) 521, 1149, 1365, 1386, 1894
MluCI AATT 6 cut(s) 480, 1057, 1177, 1222, 1444, 1841
MlyI GAGTC 3 cut(s) 390, 1412, 1715
MmeI TCCRAC 4 cut(s) 598, 1283, 1446, 1474
Mph1103I ATGCAT 1 cut(s) 1488
MseI TTAA 3 cut(s) 642, 1095, 1298
MslI CAYNNNNRTG 3 cut(s) 371, 683, 1481
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 2 cut(s) 1211, 1644
MspR9I CCNGG 4 cut(s) 194, 430, 842, 1211
MunI CAATTG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 3 cut(s) 194, 430, 842
MwoI GCNNNNNNNGC 6 cut(s) 114, 700, 1334, 1369, 1439, 1760
NciI CCSGG 1 cut(s) 1211
NcoI CCATGG 2 cut(s) 171, 1171
NdeII GATC 5 cut(s) 234, 813, 1152, 1783, 1868
NlaIII CATG 9 cut(s) 147, 175, 235, 1175, 1272, 1280, 1361, 1429, 1728
NlaIV GGNNCC 2 cut(s) 177, 617
NmuCI GTSAC 2 cut(s) 206, 380
NsiI ATGCAT 1 cut(s) 1488
OliI CACNNNNGTG 1 cut(s) 371
PagI TCATGA 2 cut(s) 231, 1357
PcsI WCGNNNNNNNCGW 1 cut(s) 1245
PctI GAATGC 1 cut(s) 433
PfeI GAWTC 3 cut(s) 411, 910, 916
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 4 cut(s) 227, 1275, 1317, 1327
PleI GAGTC 3 cut(s) 390, 1412, 1715
PpsI GAGTC 3 cut(s) 390, 1412, 1715
PshBI ATTAAT 1 cut(s) 1095
Psp124BI GAGCTC 1 cut(s) 1149
Psp6I CCWGG 3 cut(s) 192, 428, 840
PspEI GGTNACC 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 245
PspGI CCWGG 3 cut(s) 192, 428, 840
PspN4I GGNNCC 2 cut(s) 177, 617
PspPI GGNCC 4 cut(s) 92, 277, 616, 838
PsuI RGATCY 2 cut(s) 1152, 1783
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 2 cut(s) 465, 1004
RsaNI GTAC 2 cut(s) 464, 1003
RseI CAYNNNNRTG 3 cut(s) 371, 683, 1481
SacI GAGCTC 1 cut(s) 1149
SaqAI TTAA 3 cut(s) 642, 1095, 1298
SatI GCNGC 4 cut(s) 226, 1274, 1316, 1326
Sau3AI GATC 5 cut(s) 234, 813, 1152, 1783, 1868
Sau96I GGNCC 4 cut(s) 92, 277, 616, 838
SchI GAGTC 3 cut(s) 390, 1412, 1715
ScrFI CCNGG 4 cut(s) 194, 430, 842, 1211
SduI GDGCHC 5 cut(s) 521, 1149, 1365, 1386, 1894
SfaNI GCATC 1 cut(s) 1207
SfcI CTRYAG 1 cut(s) 630
SinI GGWCC 4 cut(s) 92, 277, 616, 838
SmiMI CAYNNNNRTG 3 cut(s) 371, 683, 1481
SmlI CTYRAG 3 cut(s) 84, 1148, 1500
SmoI CTYRAG 3 cut(s) 84, 1148, 1500
Sse9I AATT 6 cut(s) 480, 1057, 1177, 1222, 1444, 1841
SsiI CCGC 1 cut(s) 226
SspI AATATT 1 cut(s) 1408
SspMI CTAG 5 cut(s) 1190, 1232, 1368, 1583, 1638
SstI GAGCTC 1 cut(s) 1149
StyD4I CCNGG 4 cut(s) 192, 428, 840, 1209
StyI CCWWGG 3 cut(s) 171, 1171, 1373
TaaI ACNGT 4 cut(s) 598, 718, 1759, 1896
TaiI ACGT 1 cut(s) 549
TaqI TCGA 2 cut(s) 1248, 1851
TaqII GACCGA 1 cut(s) 313
TasI AATT 6 cut(s) 480, 1057, 1177, 1222, 1444, 1841
TatI WGTACW 1 cut(s) 1002
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 3 cut(s) 411, 910, 916
Tru1I TTAA 3 cut(s) 642, 1095, 1298
Tru9I TTAA 3 cut(s) 642, 1095, 1298
TscAI CASTG 4 cut(s) 225, 690, 807, 823
TseFI GTSAC 2 cut(s) 206, 380
TseI GCWGC 3 cut(s) 1273, 1315, 1325
Tsp45I GTSAC 2 cut(s) 206, 380
TspRI CASTG 4 cut(s) 225, 690, 807, 823
Van91I CCANNNNNTGG 1 cut(s) 104
VneI GTGCAC 1 cut(s) 1382
VpaK11BI GGWCC 4 cut(s) 92, 277, 616, 838
VspI ATTAAT 1 cut(s) 1095
XspI CTAG 5 cut(s) 1190, 1232, 1368, 1583, 1638
Zsp2I ATGCAT 1 cut(s) 1488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.