Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002498.1

Orthogroup ID

OG0006402

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 550

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002498.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgagaagctctaaacccaagtgtctcttttctctcttcctgttcttcctatgcttccatctccttcttcacctttcacaagctcaagagccatcaactgaaggctatacctgctcaatcaatgagaccaccaccaatccatgccaagcctatgcctattacagagcctcggctcctaactttcttgacctggcctccatagctgacctcttctcagttagccgcctcatgatctccaaacccagcaacatctcttccccaacttcacctctgatccaagaccaacccctgtttgttcctctatcttgttcctgcaactcagtcaacaccagcacgaccatctcctatgccaacctctcgtacacaatcaatgaaggtgacacattttacctagtttccaccaacagcttccaaaacctcacaacctaccaatctgtggagcttgtgaaccctactcttgtagccaccgaccttacaattggggtaactgcatatttccctatcttttgcaagtgccccaccaaaacccagtcgcaaaacaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

181

Amino Acids

20.02

Weight (kDa)

5.53

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02221
malus_domestica	MD13G1203700.v1.1 MD13G1203800.v1.1 MD16G1205900.v1.1
prunus_persica	Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1
pyrus_communis	pycom13g17710 pycom16g17320
rosa_chinensis	RchiOBHm_Chr4g0389541
rosa_laevigata	RLG00000009973 RLG00000009975
rosa_multiflora	Rmu_co8296341.1_g000001 Rmu_co8368025.1_g000001 Rmu_sc0002498.1_g000001 Rmu_sc0003347.1_g000004 Rmu_sc0003582.1_g000008 Rmu_sc0016342.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335500
rosa_rugosa	Rorug03G0323800
rosa_samantha	Rh4AG028200 Rh4BG021400 Rh4CG030100 Rh4DG021900
rosa_wichuraiana	Rw0G017330 Rw4G002050 Rw4G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	436
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	5 cut(s)	9, 83, 203, 408, 442
AluI	AGCT	5 cut(s)	9, 83, 203, 408, 442
Alw26I	GTCTC	2 cut(s)	29, 119
AlwI	GGATC	1 cut(s)	268
AoxI	GGCC	1 cut(s)	192
AsuHPI	GGTGA	3 cut(s)	62, 258, 389
BaeGI	GKGCMC	1 cut(s)	518
BccI	CCATC	3 cut(s)	66, 100, 347
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	29, 119
BfaI	CTAG	1 cut(s)	392
BfuAI	ACCTGC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	191
BmrI	ACTGGG	1 cut(s)	523
BmuI	ACTGGG	1 cut(s)	523
BpuEI	CTTGAG	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMII	CTCAG	2 cut(s)	228, 333
BseNI	ACTGG	1 cut(s)	529
BseSI	GKGCMC	1 cut(s)	518
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	2 cut(s)	29, 119
BsnI	GGCC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	2 cut(s)	231, 273
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	2 cut(s)	227, 332
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	174
BspMI	ACCTGC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	529
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	231, 273
Bst2UI	CCWGG	1 cut(s)	191
Bst6I	CTCTTC	3 cut(s)	41, 215, 259
BstDEI	CTNAG	2 cut(s)	214, 319
BstKTI	GATC	2 cut(s)	234, 276
BstMAI	GTCTC	2 cut(s)	29, 119
BstMBI	GATC	2 cut(s)	231, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 200
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	518
BsuRI	GGCC	1 cut(s)	194
BveI	ACCTGC	1 cut(s)	119
CciI	TCATGA	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	141, 229
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	214, 319
DpnI	GATC	2 cut(s)	233, 275
DpnII	GATC	2 cut(s)	231, 273
Eam1104I	CTCTTC	3 cut(s)	41, 215, 259
EarI	CTCTTC	3 cut(s)	41, 215, 259
Eco31I	GGTCTC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	189
FaeI	CATG	2 cut(s)	144, 232
FaiI	YATR	8 cut(s)	52, 108, 142, 153, 200, 230, 348, 493
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	2 cut(s)	140, 228
Fnu4HI	GCNGC	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	223
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	1 cut(s)	223
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	144, 232
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HphI	GGTGA	3 cut(s)	62, 258, 389
Hpy166II	GTNNAC	3 cut(s)	325, 363, 448
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	3 cut(s)	86, 185, 229
Hpy8I	GTNNAC	3 cut(s)	325, 363, 448
HpyAV	CCTTC	3 cut(s)	74, 95, 368
HpyCH4V	TGCA	3 cut(s)	315, 491, 510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 200
HpyF3I	CTNAG	2 cut(s)	214, 319
Hsp92II	CATG	2 cut(s)	144, 232
Kzo9I	GATC	2 cut(s)	231, 273
LmnI	GCTCC	2 cut(s)	178, 439
LpnPI	CCDG	8 cut(s)	53, 124, 176, 203, 256, 302, 325, 343
MaeI	CTAG	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	377, 484
MalI	GATC	2 cut(s)	233, 275
MboI	GATC	2 cut(s)	231, 273
MboII	GAAGA	5 cut(s)	28, 37, 59, 202, 246
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	518
MluCI	AATT	1 cut(s)	477
MnlI	CCTC	8 cut(s)	178, 205, 218, 236, 279, 309, 365, 428
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	111, 200
NdeII	GATC	2 cut(s)	231, 273
NlaIII	CATG	2 cut(s)	144, 232
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	377
PagI	TCATGA	1 cut(s)	228
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	174
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	2 cut(s)	231, 273
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	1 cut(s)	223
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	189
TasI	AATT	1 cut(s)	477
TauI	GCSGC	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	387
Van91I	CCANNNNNTGG	1 cut(s)	436
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.