Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8368025.1

Orthogroup ID

OG0006402

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 746

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8368025.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 746 bp

accttacaattggggtaactgcatatttccctatcttttgcaagtgccccaccaaaacccagtcgcaaaacaacgtcagttatctagtctcctatgtgttccaaccttctgataacttgtcaacagttgcttcaaggtttggggtccaaacaaactctatagttgaagttaatggcaatcgtactcagccttttgataccattttcattccagtgactcagcttcctgagctatcacaacctactgttgttccttcgcctccttcaaataagactgagaggaaaggagtgattacagggttggcagttgggttggggattactgggtttttgctgatcttggctgtcggagttttgatttttggaggtgggttggtgaagaagaggagaggtacaagaggagatgaagagaagaatcagaatctatataagaatgagaagggagataagagggcgaaggaaatggaagtgagtttgatggctgatgtttcagattgcttggacaagtacagagtgtttggtattgaagaactcagaaaagctactaatgggtttggagagaattgcttgattgaagggtctgtttacaaaggaaatattaatggggaggtctatgccatcaagaagatgaagtggaacgcctgtgaggagctcaagatcttacagaaggtactctttgtcttttcactttgtttctttaacttctgtctatatggtaaaagttttgcttttggcctatctgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

247

Amino Acids

27.29

Weight (kDa)

9.0

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02221
malus_domestica	MD13G1203700.v1.1 MD13G1203800.v1.1 MD16G1205900.v1.1
prunus_persica	Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1
pyrus_communis	pycom13g17710 pycom16g17320
rosa_chinensis	RchiOBHm_Chr4g0389541
rosa_laevigata	RLG00000009973 RLG00000009975
rosa_multiflora	Rmu_co8296341.1_g000001 Rmu_co8368025.1_g000001 Rmu_sc0002498.1_g000001 Rmu_sc0003347.1_g000004 Rmu_sc0003582.1_g000008 Rmu_sc0016342.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335500
rosa_rugosa	Rorug03G0323800
rosa_samantha	Rh4AG028200 Rh4BG021400 Rh4CG030100 Rh4DG021900
rosa_wichuraiana	Rw0G017330 Rw4G002050 Rw4G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	4 cut(s)	183, 393, 508, 671
AgsI	TTSAA	5 cut(s)	134, 166, 266, 526, 574
AluBI	AGCT	4 cut(s)	222, 231, 541, 651
AluI	AGCT	4 cut(s)	222, 231, 541, 651
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	1 cut(s)	93
AoxI	GGCC	1 cut(s)	732
AseI	ATTAAT	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	653
Bbv12I	GWGCWC	1 cut(s)	653
BccI	CCATC	2 cut(s)	471, 625
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	85
BfmI	CTRYAG	1 cut(s)	158
BglII	AGATCT	1 cut(s)	656
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	145
BmrI	ACTGGG	2 cut(s)	54, 332
BmuI	ACTGGG	2 cut(s)	54, 332
Bpu10I	CCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	637
Bse1I	ACTGG	3 cut(s)	60, 211, 327
BseMII	CTCAG	5 cut(s)	199, 218, 232, 266, 546
BseNI	ACTGG	3 cut(s)	60, 211, 327
BseRI	GAGGAG	3 cut(s)	399, 413, 661
BseSI	GKGCMC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	734
BsiHKAI	GWGCWC	1 cut(s)	653
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	734
Bsp1286I	GDGCHC	2 cut(s)	49, 653
Bsp143I	GATC	2 cut(s)	335, 656
BspANI	GGCC	1 cut(s)	734
BspCNI	CTCAG	5 cut(s)	198, 219, 231, 267, 545
BspLI	GGNNCC	1 cut(s)	145
BsrI	ACTGG	3 cut(s)	60, 211, 327
BssMI	GATC	2 cut(s)	335, 656
Bst4CI	ACNGT	2 cut(s)	126, 246
Bst6I	CTCTTC	2 cut(s)	376, 401
BstDEI	CTNAG	5 cut(s)	185, 218, 227, 275, 532
BstKTI	GATC	2 cut(s)	338, 659
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	2 cut(s)	335, 656
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	656
BstYI	RGATCY	1 cut(s)	656
BsuRI	GGCC	1 cut(s)	734
BtsIMutI	CAGTG	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	144
Csp6I	GTAC	4 cut(s)	182, 392, 507, 670
CviJI	RGCY	8 cut(s)	189, 222, 231, 343, 481, 541, 651, 734
CviKI_1	RGCY	8 cut(s)	189, 222, 231, 343, 481, 541, 651, 734
CviQI	GTAC	4 cut(s)	182, 392, 507, 670
DdeI	CTNAG	5 cut(s)	185, 218, 227, 275, 532
DpnI	GATC	2 cut(s)	337, 658
DpnII	GATC	2 cut(s)	335, 656
Eam1104I	CTCTTC	2 cut(s)	376, 401
EarI	CTCTTC	2 cut(s)	376, 401
Ecl136II	GAGCTC	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	653
Eco47I	GGWCC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	651
EcoICRI	GAGCTC	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	653
FaiI	YATR	9 cut(s)	24, 95, 160, 426, 428, 614, 711, 713, 744
FalI	AAGNNNNNCTT	4 cut(s)	658, 690, 711, 743
FriOI	GRGCYC	1 cut(s)	653
FspBI	CTAG	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	734
HincII	GTYRAC	1 cut(s)	122
HindII	GTYRAC	1 cut(s)	122
HinfI	GANTC	3 cut(s)	216, 414, 420
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	2 cut(s)	122, 585
Hpy188I	TCNGA	5 cut(s)	111, 349, 419, 492, 535
Hpy188III	TCNNGA	3 cut(s)	226, 621, 654
Hpy8I	GTNNAC	2 cut(s)	122, 585
HpyAV	CCTTC	7 cut(s)	116, 263, 272, 432, 450, 568, 660
HpyCH4III	ACNGT	2 cut(s)	126, 246
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	2 cut(s)	22, 41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpyF3I	CTNAG	5 cut(s)	185, 218, 227, 275, 532
HpySE526I	ACGT	1 cut(s)	74
Kzo9I	GATC	2 cut(s)	335, 656
LmnI	GCTCC	1 cut(s)	648
LpnPI	CCDG	6 cut(s)	73, 224, 239, 281, 308, 654
MaeI	CTAG	1 cut(s)	85
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	15, 213
MalI	GATC	2 cut(s)	337, 658
MboI	GATC	2 cut(s)	335, 656
MboII	GAAGA	6 cut(s)	390, 393, 418, 423, 538, 636
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	1 cut(s)	656
MhlI	GDGCHC	2 cut(s)	49, 653
MluCI	AATT	2 cut(s)	8, 561
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	126, 327
MnlI	CCTC	9 cut(s)	269, 272, 358, 377, 382, 391, 443, 600, 639
MseI	TTAA	3 cut(s)	170, 599, 698
MslI	CAYNNNNRTG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	228
NdeII	GATC	2 cut(s)	335, 656
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	414, 420
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PshBI	ATTAAT	1 cut(s)	599
Psp124BI	GAGCTC	1 cut(s)	653
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	656
RsaI	GTAC	4 cut(s)	183, 393, 508, 671
RsaNI	GTAC	4 cut(s)	182, 392, 507, 670
RseI	CAYNNNNRTG	1 cut(s)	211
SacI	GAGCTC	1 cut(s)	653
SaqAI	TTAA	3 cut(s)	170, 599, 698
Sau3AI	GATC	2 cut(s)	335, 656
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	49, 653
SfcI	CTRYAG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	652
SmoI	CTYRAG	1 cut(s)	652
Sse9I	AATT	2 cut(s)	8, 561
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	1 cut(s)	85
SstI	GAGCTC	1 cut(s)	653
TaaI	ACNGT	2 cut(s)	126, 246
TaiI	ACGT	1 cut(s)	77
TasI	AATT	2 cut(s)	8, 561
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	2 cut(s)	414, 420
Tru1I	TTAA	3 cut(s)	170, 599, 698
Tru9I	TTAA	3 cut(s)	170, 599, 698
TscAI	CASTG	1 cut(s)	218
TseFI	GTSAC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	3 cut(s)	195, 419, 643
TspRI	CASTG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	144
VspI	ATTAAT	1 cut(s)	599
XspI	CTAG	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.