Rw0G017330

lysM domain receptor-like kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00773
Physical Location & Seq
Forward (+)
23103 .. 26326
3224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G017330.1

Sequence Viewer

Length: 1806 bp
ATGAGAAGCTCCAGACCCAAGTGTCTCTTTTCTCTCTTCCTGTTCTTCCTATGCTTCCATCTCCTTCTTCACCTTTCACAATCTCAAGAGCCATCAACTGAAGGCTATACCTGCTCAATCAATGAGACCACCACCAATCCATGCCAAGCCTATGCCTATTACAGAGCCTCGCTGACCTCTTCTCAGTTAGCCGCCTCATCACCTCTGAACCCAGACCAACCCCTGTTTGTTCCTCTATCTTGTTCCTGCAACTCAGTCAACGCCAGCATGACCATCTCCTATGCCAATCTCTCGTACACAATCAATGGAGGTGACACATTTTACCTAGTTTCCACCAACAGCTTCCAAAACCTCACAACCTACCAATCTGTGGAGCTTGTGAACCCTACTCTTGTAGCCACCGACCTTGCAATTGGGGTAACTGCATATTTCCCTATCTTTTGCAAGTGCCCCACCAAAACCCAGTCGCAAAACAACGTCAGTTATCTAGTCTCCTATGTGTTCCAACCTTCTGATAACTTGTCAACCGTTGCTTCAAGGTTTGGGGTCCAAACAAACTCTATAGTTGAAGTTAATGGCAATCGTACTCAGCCTTTTGATACCATTTTCATTCCAGTGACTCAGCTTCCTGAGCTATCACAACCTACTGTTGTTCCTTCGCCTCCTTCAAATAAGACTGAGAGGAAAGGAGTGATTACAGGGTTGGCAGTTGGGTTGGGGATTACTGGGTTTTTGCTGATCTTGGCTGTCGGAGTTTTGATTTTTGGAGGTGGGTTGGTGAAGAAGAGGAGAGGTACAAAAGGAGATGAAGAGAAGAATCAGAATCTATATAAGAATGAGAAGGGAGATAAGAGGGCGAAGGAAATGGAAGTGAGTTTGATGGCTGATGTTTCAGATTGCTTGGACAAGTACAGAGTGTTTGGTATTGAAGAACTCAGAGAAGCTACTAATGGGTTTGGAGAGAATTGCTTGATTGAAGGGTCTGTTTACAAAGGAAATATTAATGGGGAGGTCTATGCCATCAAGAAGATGAAGTGGAACGCCTGTGAGGAGCTCAAGATCTTACAGAAGGTAAACCATGGCAATTTGGTGAAGCTAGAAGGCTTCTGCATAGACCCAGAGGATGCAAATTGCTATCTAGTTTATGAGTATGTCGAAAATGGCTCTCTCTATTCATGGCTGCATGAAAACCCGAATGAAAAGGTAAGTTGGAAGACAAGGCTGCATATTGCTGCTGATGTCGCAAATGGTCTGCAATATATTCATGAGCACACTAGGCCAAGGGTCGTGCACAAAGACATAAAGAGCAGTAATATTCTCTTGGACTCCAACATGAGAGCCAAAATAGCCAATTTCGGGCTTGCAAAGTCTGGTTGCAATGCCATAACAATGCACATTGTTGGAACTCAAGGTTATATTGCCCCCGAGTATCTGACTGATGGGGTGGTGTCAACAAAAATGGATGTGTTCTCCTTTGGGGTAGTTTTACTAGAGCTTCTTTCAGGGAAAGAGGCCATTGATGAAGCTGGAAATGTTCTGTGGGCTAGCGCTGGTAGGATTTTGGAGGGAAGTGAGGAACAGAAGGCAGAGAAAGTAAAGCAATGGGTGGACAAGGAGCTTTTCCTTGAGTCATGCTCAATGGAGAGCATAGTGAATGTTGCGACTGTTGCCATTGCCTGTTTGCATAAAGATCCTTCTAAAAGGCCAAGTATGGTGGACATTGTTTATGCCTTGTGTAAGAGCGATGAATTGTTTTTCGATATCTCAGACGATGGATCATCAGCTCCCCCAGTAAGAGCACGGTAA

Protein Analysis

601

Amino Acids

66.24

Weight (kDa)

5.71

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM2_NFP PF23457 93 - 147 9.1e-22 NFP LysM2 domain
LysM2_CERK1_LYK3_4_5 PF23472 95 - 140 7.8e-07 LYK3/4/5 LysM2 domain
LysM3_NFP PF23462 162 - 206 6.5e-08 NFP LysM3 domain
Pkinase PF00069 328 - 575 8.9e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 345 - 577 2.3e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 119
AccB7I CCANNNNNTGG 1 cut(s) 370
AciI CCGC 1 cut(s) 192
AclWI GGATC 2 cut(s) 1685, 1783
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 4 cut(s) 296, 586, 796, 911
AfeI AGCGCT 1 cut(s) 1549
AfiI CCNNNNNNNGG 2 cut(s) 370, 1356
AgsI TTSAA 5 cut(s) 537, 569, 669, 929, 977
Alw21I GWGCWC 4 cut(s) 1056, 1272, 1293, 1801
Alw26I GTCTC 3 cut(s) 29, 119, 496
Alw44I GTGCAC 1 cut(s) 1289
AlwI GGATC 2 cut(s) 1685, 1783
Ama87I CYCGRG 1 cut(s) 1424
Aor51HI AGCGCT 1 cut(s) 1549
AoxI GGCC 3 cut(s) 1277, 1512, 1703
ApaLI GTGCAC 1 cut(s) 1289
ApeKI GCWGC 3 cut(s) 1180, 1222, 1232
AseI ATTAAT 1 cut(s) 1002
AspLEI GCGC 1 cut(s) 1550
AspS9I GGNCC 1 cut(s) 547
AsuHPI GGTGA 5 cut(s) 62, 192, 323, 790, 1102
AsuNHI GCTAGC 1 cut(s) 1544
AvaI CYCGRG 1 cut(s) 1424
AvaII GGWCC 1 cut(s) 547
BaeGI GKGCMC 2 cut(s) 452, 1293
BanII GRGCYC 1 cut(s) 1056
BbsI GAAGAC 1 cut(s) 1220
Bbv12I GWGCWC 4 cut(s) 1056, 1272, 1293, 1801
BbvI GCAGC 3 cut(s) 1167, 1209, 1219
BccI CCATC 7 cut(s) 66, 100, 281, 874, 1028, 1433, 1766
BcoDI GTCTC 3 cut(s) 29, 119, 496
BfaI CTAG 7 cut(s) 326, 488, 1097, 1139, 1275, 1490, 1545
BfmI CTRYAG 1 cut(s) 561
BfoI RGCGCY 1 cut(s) 1551
BfuAI ACCTGC 1 cut(s) 119
BglII AGATCT 1 cut(s) 1059
BisI GCNGC 4 cut(s) 192, 1181, 1223, 1233
BlsI GCNGC 4 cut(s) 193, 1182, 1224, 1234
Bme18I GGWCC 1 cut(s) 547
BmeT110I CYCGRG 1 cut(s) 1424
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 1 cut(s) 548
BmrI ACTGGG 3 cut(s) 457, 735, 1784
BmsI GCATC 1 cut(s) 1114
BmtI GCTAGC 1 cut(s) 1548
BmuI ACTGGG 3 cut(s) 457, 735, 1784
BpiI GAAGAC 1 cut(s) 1220
BplI GAGNNNNNCTC 2 cut(s) 1619, 1651
Bpu10I CCTNAGC 1 cut(s) 630
BpuEI CTTGAG 4 cut(s) 69, 1040, 1392, 1646
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 1078, 1280
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 1356
Bse1I ACTGG 4 cut(s) 463, 614, 730, 1790
Bse3DI GCAATG 3 cut(s) 1384, 1607, 1671
BseDI CCNNGG 2 cut(s) 1078, 1280
BseGI GGATG 2 cut(s) 1129, 1468
BseLI CCNNNNNNNGG 2 cut(s) 370, 1356
BseMI GCAATG 3 cut(s) 1384, 1607, 1671
BseMII CTCAG 8 cut(s) 197, 267, 602, 621, 635, 669, 949, 1779
BseNI ACTGG 4 cut(s) 463, 614, 730, 1790
BseRI GAGGAG 2 cut(s) 802, 1064
BseSI GKGCMC 2 cut(s) 452, 1293
BseXI GCAGC 3 cut(s) 1167, 1209, 1219
BshFI GGCC 3 cut(s) 1279, 1514, 1705
BsiHKAI GWGCWC 4 cut(s) 1056, 1272, 1293, 1801
BsiHKCI CYCGRG 1 cut(s) 1424
BslI CCNNNNNNNGG 2 cut(s) 370, 1356
BsmAI GTCTC 3 cut(s) 29, 119, 496
BsnI GGCC 3 cut(s) 1279, 1514, 1705
Bso31I GGTCTC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 1424
Bsp1286I GDGCHC 5 cut(s) 452, 1056, 1272, 1293, 1801
Bsp143I GATC 4 cut(s) 738, 1059, 1690, 1775
Bsp19I CCATGG 1 cut(s) 1078
BspACI CCGC 1 cut(s) 192
BspANI GGCC 3 cut(s) 1279, 1514, 1705
BspCNI CTCAG 8 cut(s) 196, 266, 601, 622, 634, 670, 948, 1778
BspHI TCATGA 1 cut(s) 1264
BspLI GGNNCC 1 cut(s) 548
BspMI ACCTGC 1 cut(s) 119
BspOI GCTAGC 1 cut(s) 1548
BspPI GGATC 2 cut(s) 1685, 1783
BspTNI GGTCTC 1 cut(s) 119
BsrDI GCAATG 3 cut(s) 1384, 1607, 1671
BsrI ACTGG 4 cut(s) 463, 614, 730, 1790
BssECI CCNNGG 2 cut(s) 1078, 1280
BssMI GATC 4 cut(s) 738, 1059, 1690, 1775
BssT1I CCWWGG 2 cut(s) 1078, 1280
Bst4CI ACNGT 4 cut(s) 529, 649, 1666, 1803
Bst6I CTCTTC 4 cut(s) 41, 184, 779, 804
BstC8I GCNNGC 3 cut(s) 265, 1362, 1546
BstDEI CTNAG 8 cut(s) 183, 253, 588, 621, 630, 678, 935, 1765
BstDSI CCRYGG 1 cut(s) 1078
BstF5I GGATG 2 cut(s) 1129, 1468
BstH2I RGCGCY 1 cut(s) 1551
BstHHI GCGC 1 cut(s) 1550
BstKTI GATC 4 cut(s) 741, 1062, 1693, 1778
BstMAI GTCTC 3 cut(s) 29, 119, 496
BstMBI GATC 4 cut(s) 738, 1059, 1690, 1775
BstMWI GCNNNNNNNGC 6 cut(s) 111, 631, 1241, 1276, 1346, 1667
BstSFI CTRYAG 1 cut(s) 561
BstSLI GKGCMC 2 cut(s) 452, 1293
BstV1I GCAGC 3 cut(s) 1167, 1209, 1219
BstV2I GAAGAC 1 cut(s) 1220
BstX2I RGATCY 2 cut(s) 1059, 1690
BstYI RGATCY 2 cut(s) 1059, 1690
BsuRI GGCC 3 cut(s) 1279, 1514, 1705
BtgI CCRYGG 1 cut(s) 1078
BtgZI GCGATG 1 cut(s) 1758
BtsCI GGATG 2 cut(s) 1129, 1468
BtsIMutI CAGTG 1 cut(s) 621
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 3 cut(s) 265, 1362, 1546
CciI TCATGA 1 cut(s) 1264
CfoI GCGC 1 cut(s) 1550
Cfr13I GGNCC 1 cut(s) 547
Csp6I GTAC 4 cut(s) 295, 585, 795, 910
CspCI CAANNNNNGTGG 4 cut(s) 388, 423, 1695, 1730
CviAII CATG 8 cut(s) 141, 268, 1079, 1176, 1184, 1265, 1333, 1632
CviQI GTAC 4 cut(s) 295, 585, 795, 910
DdeI CTNAG 8 cut(s) 183, 253, 588, 621, 630, 678, 935, 1765
DpnI GATC 4 cut(s) 740, 1061, 1692, 1777
DpnII GATC 4 cut(s) 738, 1059, 1690, 1775
DrdI GACNNNNNNGTC 1 cut(s) 21
DseDI GACNNNNNNGTC 1 cut(s) 21
Eam1104I CTCTTC 4 cut(s) 41, 184, 779, 804
EarI CTCTTC 4 cut(s) 41, 184, 779, 804
Ecl136II GAGCTC 1 cut(s) 1054
Eco130I CCWWGG 2 cut(s) 1078, 1280
Eco24I GRGCYC 1 cut(s) 1056
Eco31I GGTCTC 1 cut(s) 119
Eco32I GATATC 1 cut(s) 1762
Eco47I GGWCC 1 cut(s) 547
Eco47III AGCGCT 1 cut(s) 1549
Eco53kI GAGCTC 1 cut(s) 1054
Eco57I CTGAAG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 1424
EcoICRI GAGCTC 1 cut(s) 1054
EcoRV GATATC 1 cut(s) 1762
EcoT14I CCWWGG 2 cut(s) 1078, 1280
EcoT38I GRGCYC 1 cut(s) 1056
ErhI CCWWGG 2 cut(s) 1078, 1280
FaeI CATG 8 cut(s) 144, 271, 1082, 1179, 1187, 1268, 1336, 1635
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 8 cut(s) 140, 267, 1078, 1175, 1183, 1264, 1332, 1631
Fnu4HI GCNGC 4 cut(s) 192, 1181, 1223, 1233
FokI GGATG 2 cut(s) 1136, 1475
FriOI GRGCYC 1 cut(s) 1056
Fsp4HI GCNGC 4 cut(s) 192, 1181, 1223, 1233
FspBI CTAG 7 cut(s) 326, 488, 1097, 1139, 1275, 1490, 1545
GlaI GCGC 1 cut(s) 1549
GluI GCNGC 4 cut(s) 192, 1181, 1223, 1233
HaeII RGCGCY 1 cut(s) 1551
HaeIII GGCC 3 cut(s) 1279, 1514, 1705
HhaI GCGC 1 cut(s) 1550
Hin1II CATG 8 cut(s) 144, 271, 1082, 1179, 1187, 1268, 1336, 1635
Hin6I GCGC 1 cut(s) 1548
HinP1I GCGC 1 cut(s) 1548
HincII GTYRAC 3 cut(s) 259, 525, 1452
HindII GTYRAC 3 cut(s) 259, 525, 1452
HinfI GANTC 5 cut(s) 619, 817, 823, 1325, 1628
HphI GGTGA 5 cut(s) 62, 192, 323, 790, 1102
Hpy188I TCNGA 8 cut(s) 207, 514, 752, 822, 895, 938, 1434, 1768
Hpy188III TCNNGA 6 cut(s) 12, 86, 629, 1024, 1057, 1265
HpyCH4III ACNGT 4 cut(s) 529, 649, 1666, 1803
HpyCH4IV ACGT 1 cut(s) 477
HpyF10VI GCNNNNNNNGC 6 cut(s) 111, 631, 1241, 1276, 1346, 1667
HpyF3I CTNAG 8 cut(s) 183, 253, 588, 621, 630, 678, 935, 1765
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 8 cut(s) 144, 271, 1082, 1179, 1187, 1268, 1336, 1635
HspAI GCGC 1 cut(s) 1548
Kzo9I GATC 4 cut(s) 738, 1059, 1690, 1775
LmnI GCTCC 5 cut(s) 14, 373, 1051, 1615, 1789
Lsp1109I GCAGC 3 cut(s) 1167, 1209, 1219
LweI GCATC 1 cut(s) 1114
MaeI CTAG 7 cut(s) 326, 488, 1097, 1139, 1275, 1490, 1545
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 3 cut(s) 311, 418, 616
MalI GATC 4 cut(s) 740, 1061, 1692, 1777
MboI GATC 4 cut(s) 738, 1059, 1690, 1775
MfeI CAATTG 1 cut(s) 411
MflI RGATCY 2 cut(s) 1059, 1690
MhlI GDGCHC 5 cut(s) 452, 1056, 1272, 1293, 1801
MluCI AATT 6 cut(s) 411, 964, 1084, 1129, 1351, 1748
MlyI GAGTC 3 cut(s) 613, 1319, 1637
MmeI TCCRAC 5 cut(s) 529, 730, 1190, 1353, 1381
MseI TTAA 2 cut(s) 573, 1002
MslI CAYNNNNRTG 2 cut(s) 614, 1388
MunI CAATTG 1 cut(s) 411
MwoI GCNNNNNNNGC 6 cut(s) 111, 631, 1241, 1276, 1346, 1667
NcoI CCATGG 1 cut(s) 1078
NdeII GATC 4 cut(s) 738, 1059, 1690, 1775
NheI GCTAGC 1 cut(s) 1544
NlaIII CATG 8 cut(s) 144, 271, 1082, 1179, 1187, 1268, 1336, 1635
NlaIV GGNNCC 1 cut(s) 548
NmuCI GTSAC 2 cut(s) 311, 616
PagI TCATGA 1 cut(s) 1264
PfeI GAWTC 2 cut(s) 817, 823
PflMI CCANNNNNTGG 1 cut(s) 370
PkrI GCNGC 4 cut(s) 193, 1182, 1224, 1234
PleI GAGTC 3 cut(s) 613, 1319, 1636
PpsI GAGTC 3 cut(s) 613, 1319, 1636
PshBI ATTAAT 1 cut(s) 1002
Psp124BI GAGCTC 1 cut(s) 1056
PspN4I GGNNCC 1 cut(s) 548
PspPI GGNCC 1 cut(s) 547
PsuI RGATCY 2 cut(s) 1059, 1690
RsaI GTAC 4 cut(s) 296, 586, 796, 911
RsaNI GTAC 4 cut(s) 295, 585, 795, 910
RseI CAYNNNNRTG 2 cut(s) 614, 1388
SacI GAGCTC 1 cut(s) 1056
SaqAI TTAA 2 cut(s) 573, 1002
SatI GCNGC 4 cut(s) 192, 1181, 1223, 1233
Sau3AI GATC 4 cut(s) 738, 1059, 1690, 1775
Sau96I GGNCC 1 cut(s) 547
SchI GAGTC 3 cut(s) 613, 1319, 1637
SduI GDGCHC 5 cut(s) 452, 1056, 1272, 1293, 1801
SfaNI GCATC 1 cut(s) 1114
SfcI CTRYAG 1 cut(s) 561
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 2 cut(s) 614, 1388
SmlI CTYRAG 4 cut(s) 84, 1055, 1407, 1625
SmoI CTYRAG 4 cut(s) 84, 1055, 1407, 1625
Sse9I AATT 6 cut(s) 411, 964, 1084, 1129, 1351, 1748
SsiI CCGC 1 cut(s) 192
SspI AATATT 2 cut(s) 1000, 1315
SspMI CTAG 7 cut(s) 326, 488, 1097, 1139, 1275, 1490, 1545
SstI GAGCTC 1 cut(s) 1056
StyI CCWWGG 2 cut(s) 1078, 1280
TaaI ACNGT 4 cut(s) 529, 649, 1666, 1803
TaiI ACGT 1 cut(s) 480
TaqI TCGA 2 cut(s) 1155, 1758
TasI AATT 6 cut(s) 411, 964, 1084, 1129, 1351, 1748
TatI WGTACW 1 cut(s) 909
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 2 cut(s) 817, 823
Tru1I TTAA 2 cut(s) 573, 1002
Tru9I TTAA 2 cut(s) 573, 1002
TscAI CASTG 1 cut(s) 621
TseFI GTSAC 2 cut(s) 311, 616
TseI GCWGC 3 cut(s) 1180, 1222, 1232
Tsp45I GTSAC 2 cut(s) 311, 616
TspDTI ATGAA 9 cut(s) 598, 822, 1046, 1164, 1200, 1212, 1253, 1536, 1761
TspRI CASTG 1 cut(s) 621
Van91I CCANNNNNTGG 1 cut(s) 370
VneI GTGCAC 1 cut(s) 1289
VpaK11BI GGWCC 1 cut(s) 547
VspI ATTAAT 1 cut(s) 1002
XspI CTAG 7 cut(s) 326, 488, 1097, 1139, 1275, 1490, 1545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.