Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006402

Physical Location & Seq

Genomic Coordinates Forward (+)

19021718 .. 19022439

Gene Structure 722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1205900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGACTTTTCAAATTTTGAAGGTAAACCATGGCAATTTGGTGAAGCTAGAGGGTTTCTGCATAGACCAGGAGGATGATTCTTGCTATCTAATTTACGGACAAGGCTGCAAGTTGCTATACACTAGGCCGAAGGTTGTGCACAAAGACATCAAAAGCAGCAATATTCTATTAGATTCGAACATGAGAGCGAAAATAGCAAATTTTGGGCTCGCAAAAACCGGTTGCAATGCCATAACAATGCACATTGTTGGAACTCAAGGTTACATTGCACCCGAGTATCTAGCTGACGGGGGGGGTGCGATTGATGAAGATGGAAATGTTTTGTGGGCAAGTGCTGGTAGTATTTTGGAAGGAAATGAGGAAGATAAGGCAAGGAAACTCAGGGAGTGGGTGGACAGTGAACTTGTCCTGGAGTCGTTCTCAATGGAGAGCATAGTGAATGTTGTGACTGTTGTCATTGCTTGTGTGCATAAAGATCCTTCAAAAAGGCCAACCATGGTGGATATTGTCTATGCCTTGTGTAAGAGTGATGATTTGTTTTTTGACATCTCCGATGATGGATCATCGACTCCCCCAGTCAAAGCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

197

Amino Acids

21.51

Weight (kDa)

4.98

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	35 - 169	1.9e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	42 - 172	2.5e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02221
malus_domestica	MD13G1203700.v1.1 MD13G1203800.v1.1 MD16G1205900.v1.1
prunus_persica	Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1
pyrus_communis	pycom13g17710 pycom16g17320
rosa_chinensis	RchiOBHm_Chr4g0389541
rosa_laevigata	RLG00000009973 RLG00000009975
rosa_multiflora	Rmu_co8296341.1_g000001 Rmu_co8368025.1_g000001 Rmu_sc0002498.1_g000001 Rmu_sc0003347.1_g000004 Rmu_sc0003582.1_g000008 Rmu_sc0016342.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335500
rosa_rugosa	Rorug03G0323800
rosa_samantha	Rh4AG028200 Rh4BG021400 Rh4CG030100 Rh4DG021900
rosa_wichuraiana	Rw0G017330 Rw4G002050 Rw4G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	470, 568
AcsI	RAATTY	2 cut(s)	12, 199
AgeI	ACCGGT	1 cut(s)	218
AgsI	TTSAA	3 cut(s)	11, 19, 483
AjnI	CCWGG	2 cut(s)	66, 408
AluBI	AGCT	2 cut(s)	46, 284
AluI	AGCT	2 cut(s)	46, 284
Alw21I	GWGCWC	1 cut(s)	141
Alw44I	GTGCAC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	470, 568
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	125, 488
ApaLI	GTGCAC	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	105, 156
ApoI	RAATTY	2 cut(s)	12, 199
AsiGI	ACCGGT	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	52
AsuII	TTCGAA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	141
BaeI	ACNNNNGTAYC	2 cut(s)	260, 293
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	92, 168
BccI	CCATC	2 cut(s)	305, 551
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	2 cut(s)	68, 410
BfaI	CTAG	3 cut(s)	47, 123, 281
BisI	GCNGC	2 cut(s)	106, 157
BlsI	GCNGC	2 cut(s)	107, 158
Bme1390I	CCNGG	2 cut(s)	68, 410
BmeT110I	CYCGRG	1 cut(s)	272
BmrFI	CCNGG	2 cut(s)	68, 410
BmrI	ACTGGG	1 cut(s)	569
BmuI	ACTGGG	1 cut(s)	569
BoxI	GACNNNNGTC	1 cut(s)	452
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
BpmI	CTGGAG	1 cut(s)	431
Bpu14I	TTCGAA	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	28, 495
BsaWI	WCCGGW	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	575
Bse3DI	GCAATG	3 cut(s)	232, 264, 456
BseBI	CCWGG	2 cut(s)	68, 410
BseDI	CCNNGG	2 cut(s)	28, 495
BseGI	GGATG	1 cut(s)	79
BseMI	GCAATG	3 cut(s)	232, 264, 456
BseMII	CTCAG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	92, 168
BshFI	GGCC	2 cut(s)	127, 490
BshTI	ACCGGT	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	219
BsnI	GGCC	2 cut(s)	127, 490
BsoBI	CYCGRG	1 cut(s)	272
Bsp119I	TTCGAA	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	141, 210
Bsp143I	GATC	2 cut(s)	475, 560
Bsp19I	CCATGG	2 cut(s)	28, 495
BspANI	GGCC	2 cut(s)	127, 490
BspCNI	CTCAG	1 cut(s)	393
BspPI	GGATC	2 cut(s)	470, 568
BspT104I	TTCGAA	1 cut(s)	176
BsrDI	GCAATG	3 cut(s)	232, 264, 456
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	28, 495
BssMI	GATC	2 cut(s)	475, 560
BssT1I	CCWWGG	2 cut(s)	28, 495
Bst2UI	CCWGG	2 cut(s)	68, 410
Bst4CI	ACNGT	2 cut(s)	398, 451
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	380
BstDSI	CCRYGG	2 cut(s)	28, 495
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	2 cut(s)	478, 563
BstMBI	GATC	2 cut(s)	475, 560
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	2 cut(s)	68, 410
BstPAI	GACNNNNGTC	1 cut(s)	452
BstSCI	CCNGG	2 cut(s)	66, 408
BstSLI	GKGCMC	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	92, 168
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	127, 490
BtgI	CCRYGG	2 cut(s)	28, 495
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	210
Cfr10I	RCCGGY	1 cut(s)	218
CspAI	ACCGGT	1 cut(s)	218
CspCI	CAANNNNNGTGG	2 cut(s)	480, 515
CviAII	CATG	3 cut(s)	29, 181, 496
CviJI	RGCY	6 cut(s)	46, 105, 127, 208, 284, 490
CviKI_1	RGCY	6 cut(s)	46, 105, 127, 208, 284, 490
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	2 cut(s)	477, 562
DpnII	GATC	2 cut(s)	475, 560
Eco130I	CCWWGG	2 cut(s)	28, 495
Eco24I	GRGCYC	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	66, 408
EcoT14I	CCWWGG	2 cut(s)	28, 495
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	2 cut(s)	28, 495
FaeI	CATG	3 cut(s)	32, 184, 499
FaiI	YATR	9 cut(s)	30, 62, 118, 182, 233, 434, 471, 497, 513
FatI	CATG	3 cut(s)	28, 180, 495
Fnu4HI	GCNGC	2 cut(s)	106, 157
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	2 cut(s)	106, 157
FspBI	CTAG	3 cut(s)	47, 123, 281
GluI	GCNGC	2 cut(s)	106, 157
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	127, 490
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	3 cut(s)	32, 184, 499
HinfI	GANTC	4 cut(s)	77, 173, 413, 568
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	4 cut(s)	25, 139, 394, 401
Hpy188I	TCNGA	1 cut(s)	553
Hpy8I	GTNNAC	4 cut(s)	25, 139, 394, 401
HpyAV	CCTTC	4 cut(s)	13, 124, 344, 489
HpyCH4III	ACNGT	2 cut(s)	398, 451
HpyCH4V	TGCA	7 cut(s)	60, 108, 139, 225, 241, 269, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	380
Hsp92II	CATG	3 cut(s)	32, 184, 499
Kzo9I	GATC	2 cut(s)	475, 560
LpnPI	CCDG	7 cut(s)	53, 80, 232, 321, 367, 395, 422
Lsp1109I	GCAGC	2 cut(s)	92, 168
MaeI	CTAG	3 cut(s)	47, 123, 281
MaeIII	GTNAC	2 cut(s)	260, 445
MalI	GATC	2 cut(s)	477, 562
MboI	GATC	2 cut(s)	475, 560
MboII	GAAGA	2 cut(s)	320, 374
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	2 cut(s)	141, 210
MluCI	AATT	4 cut(s)	12, 34, 90, 199
MlyI	GAGTC	2 cut(s)	422, 562
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	3 cut(s)	43, 64, 352
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	68, 410
MvaI	CCWGG	2 cut(s)	68, 410
MwoI	GCNNNNNNNGC	1 cut(s)	194
NcoI	CCATGG	2 cut(s)	28, 495
NdeII	GATC	2 cut(s)	475, 560
NlaIII	CATG	3 cut(s)	32, 184, 499
NmuCI	GTSAC	1 cut(s)	445
NspV	TTCGAA	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	77, 173
PfoI	TCCNGGA	1 cut(s)	408
PinAI	ACCGGT	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	107, 158
PleI	GAGTC	2 cut(s)	421, 562
PpsI	GAGTC	2 cut(s)	421, 562
PshAI	GACNNNNGTC	1 cut(s)	452
Psp6I	CCWGG	2 cut(s)	66, 408
PspGI	CCWGG	2 cut(s)	66, 408
PsuI	RGATCY	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	236
SatI	GCNGC	2 cut(s)	106, 157
Sau3AI	GATC	2 cut(s)	475, 560
SchI	GAGTC	2 cut(s)	422, 562
ScrFI	CCNGG	2 cut(s)	68, 410
SduI	GDGCHC	2 cut(s)	141, 210
SetI	ASST	5 cut(s)	24, 48, 135, 262, 286
SfuI	TTCGAA	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	4 cut(s)	12, 34, 90, 199
SspI	AATATT	1 cut(s)	163
SspMI	CTAG	3 cut(s)	47, 123, 281
StyD4I	CCNGG	2 cut(s)	66, 408
StyI	CCWWGG	2 cut(s)	28, 495
TaaI	ACNGT	2 cut(s)	398, 451
TaqI	TCGA	2 cut(s)	176, 566
TasI	AATT	4 cut(s)	12, 34, 90, 199
TfiI	GAWTC	2 cut(s)	77, 173
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	2 cut(s)	105, 156
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	403
VneI	GTGCAC	1 cut(s)	137
XapI	RAATTY	2 cut(s)	12, 199
XspI	CTAG	3 cut(s)	47, 123, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.