RLG00000009973

lysM domain receptor-like kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
61406289 .. 61409602
3314 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009973

Sequence Viewer

Length: 1890 bp
ATGAGAAGCTCCAAACCCAAATGTGTCTGTTCTCTCTTCCTGTTCTTTCTATGCTTCCATCTCCTTCTTCACCATTCACAAGCTCAAGGAGGTCCACCAGCTGATGGCTATACCTGCTCAATCAATGAGACCACCGCCAATCCATGCCAAGCCTATGCCTATTACAGGGCCATGGCTCCTGACTTTCTTGACCTGGCCTCCATAGGTGACCTCTTCTCAGTGAGCCGCCTCATGATCTCCAAACCCAGCAACATCTCTTCCCCAACTTCACCTCTGGTCCAAGACCAACCCCTCTTTGTTCCTCTATCTTGTTCCTGCAACTCGGTCAACACAAGCACGAACATCTCCTATGCCAATATCTCATACACAATCGTGAGAGGTGACACTTTTTTCCGACTCTCCACCCTGAGCTTCCAAAACCTCACAACCTGGCATTCTGTGGTGCTTGTGAACCCTACTCTTGTACCCACCAACCTTACAATTGGGGTAACTGCATATTTCCCAATCTTTTGCAAGTGCCCCACCAAAACCCAGTCGCAAAACAACGTCAGTTATCTAGTCTCCTATGTGTTCCAACCTTCTGATACCTTGTCAACAGTTGCTTCAAGGTTTGGGGTCCAAACAAACTCTATAGTTGAAGTTAATGGCAATAATACTCAGCCTTTTGATACCATATTCATTCCAGTGTCTCAGCTTCCTGAGCTATCACAACCTACTGTTTCTCCTTCACCTTCACCTTCTTCACCTCCTTCAAATAAGACTGAGAGGAAAGGAGTGATTACAGGGTTGGCAGTTGGGTTGGGGATCACTGGGTTTTTGCTGATTTTGGTCCTGGGGCTTTTGATTTTTGGAGGTGGGTTGGTGAAGAAGAGGAGAGGCATAAGAAGAGATGAAGAGAAGAATCTGAATCTATATAAGAATGAGAAGGGAGATAAGAGGGCGAAGGAAATGGAAGTGAGTTTGATGGCTGATGTTTCAGATTGCTTGGACAAGTACAGAGTGTTTGGTGTTGAAGAACTCAGAGAAGCTACTAATGGGTTTGGAGAGAATTGCTTGATTGAAGGGTCTGTTTACAAAGGAAATATTAATGGGGAGGTCTATGCCATTAATAAGATGAAGTGGAACGGCTGTGAGGAGCTCAAGATCTTACAGAAGGTAAACCATGGCAATTTGGTGAAGCTAGAAGGCTTCTGCATAGACCCGGAGGATGCAAAATGCTATCTAGTTTATGAGTATGTTGAAAATGGCTCTCTCTATTCATGGCTGCATGAAAACCCGAATGAAAAGTTAAGTTGGCAGACAAGGCTGCATATTGCTGCTGATGTCGCAAATGGTCTGCAATATATTCATGAGCACACTAGGGCAAGGGTCGTGCACAAAGACATAAAGAGCAGTAATATTCTCTTGGACTCCAACATGAGAGCCAAAATAGCCAATTTCGGGTTAGCAAAGTCTGGTTGCAATGCCATAACAATGCACATTGTCGGAACTCAAGGTTATATTGCCCCTGAGTATCTAACTGATGGGGTGGTGTCAACAAAAATGGATGTTTTCTCCTTTGGGGTAGTTTTGCTAGAGCTTCTTTCAGGGAAGGAGGCCATTGATGAAGCTGGAAATGTTCTGTGGGCTAGCGCTGGTAGGATTTTGGAGGGAAGTGAAGAAGAGAAGGCACAGAAAGTAAAGCAATGGGTGGACAAGGAGCTTTTCCTTGACTCATGCTCAATGGAGAGCATAATGAATGTTGCGACTGTTGCCATTGCCTGTTTGCGTAAAGATCCTTCTAAAAGGCCAAGTATGGTGGACATTGTTTATGCCTTGTGTAAGAGCGATGAATTGTTTTTTGATATCTCACACGATGGATCATCAGCTCCCCCGGTAAGAGCACGGTAA

Protein Analysis

630

Amino Acids

69.32

Weight (kDa)

6.34

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM1_NFP_LYK PF23446 49 - 106 1.8e-17 NFP/LYK LysM1 domain
LysM2_NFP PF23457 116 - 170 1.5e-22 NFP LysM2 domain
LysM3_NFP PF23462 185 - 229 2.7e-07 NFP LysM3 domain
Pkinase PF00069 375 - 603 2e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 376 - 605 1.4e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 104
AciI CCGC 2 cut(s) 135, 226
AclWI GGATC 3 cut(s) 812, 1769, 1867
AfaI GTAC 2 cut(s) 465, 995
AfeI AGCGCT 1 cut(s) 1633
AfiI CCNNNNNNNGG 3 cut(s) 104, 165, 1440
AgsI TTSAA 6 cut(s) 606, 638, 753, 1013, 1061, 1241
AjnI CCWGG 3 cut(s) 192, 428, 831
AleI CACNNNNGTG 1 cut(s) 371
Alw21I GWGCWC 4 cut(s) 1140, 1356, 1377, 1885
Alw26I GTCTC 3 cut(s) 122, 565, 693
Alw44I GTGCAC 1 cut(s) 1373
AlwI GGATC 3 cut(s) 812, 1769, 1867
Aor51HI AGCGCT 1 cut(s) 1633
AoxI GGCC 4 cut(s) 168, 195, 1596, 1787
ApaLI GTGCAC 1 cut(s) 1373
ApeKI GCWGC 3 cut(s) 1264, 1306, 1316
AseI ATTAAT 2 cut(s) 1086, 1107
AspLEI GCGC 1 cut(s) 1634
AspS9I GGNCC 5 cut(s) 92, 168, 277, 616, 829
AsuC2I CCSGG 2 cut(s) 1202, 1874
AsuHPI GGTGA 9 cut(s) 62, 218, 261, 392, 720, 726, 735, 874, 1186
AsuNHI GCTAGC 1 cut(s) 1628
AvaII GGWCC 4 cut(s) 92, 277, 616, 829
BaeGI GKGCMC 2 cut(s) 521, 1377
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BanII GRGCYC 1 cut(s) 1140
BarI GAAGNNNNNNTAC 2 cut(s) 1762, 1794
Bbv12I GWGCWC 4 cut(s) 1140, 1356, 1377, 1885
BbvI GCAGC 3 cut(s) 1251, 1293, 1303
BccI CCATC 5 cut(s) 66, 98, 958, 1517, 1850
BceAI ACGGC 1 cut(s) 1141
BciT130I CCWGG 3 cut(s) 194, 430, 833
BcnI CCSGG 2 cut(s) 1202, 1874
BcoDI GTCTC 3 cut(s) 122, 565, 693
BfaI CTAG 6 cut(s) 557, 1181, 1223, 1359, 1574, 1629
BfmI CTRYAG 1 cut(s) 630
BfoI RGCGCY 1 cut(s) 1635
BfuAI ACCTGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 1143
BisI GCNGC 4 cut(s) 226, 1265, 1307, 1317
BlsI GCNGC 4 cut(s) 227, 1266, 1308, 1318
Bme1390I CCNGG 5 cut(s) 194, 430, 833, 1202, 1874
Bme18I GGWCC 4 cut(s) 92, 277, 616, 829
BmgT120I GGNCC 5 cut(s) 92, 168, 277, 616, 829
BmiI GGNNCC 2 cut(s) 177, 617
BmrFI CCNGG 5 cut(s) 194, 430, 833, 1202, 1874
BmrI ACTGGG 2 cut(s) 526, 819
BmsI GCATC 1 cut(s) 1198
BmtI GCTAGC 1 cut(s) 1632
BmuI ACTGGG 2 cut(s) 526, 819
Bpu10I CCTNAGC 2 cut(s) 407, 699
BpuEI CTTGAG 3 cut(s) 69, 1124, 1476
BpuMI CCSGG 2 cut(s) 1202, 1874
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 4 cut(s) 171, 832, 1162, 1872
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 706, 736
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 165, 1440
Bse1I ACTGG 3 cut(s) 532, 683, 814
Bse3DI GCAATG 3 cut(s) 1468, 1691, 1755
BseBI CCWGG 3 cut(s) 194, 430, 833
BseDI CCNNGG 4 cut(s) 171, 832, 1162, 1872
BseGI GGATG 2 cut(s) 1213, 1552
BseLI CCNNNNNNNGG 3 cut(s) 104, 165, 1440
BseMI GCAATG 3 cut(s) 1468, 1691, 1755
BseMII CTCAG 8 cut(s) 231, 398, 671, 690, 704, 753, 1033, 1500
BseNI ACTGG 3 cut(s) 532, 683, 814
BseRI GAGGAG 2 cut(s) 886, 1148
BseSI GKGCMC 2 cut(s) 521, 1377
BseXI GCAGC 3 cut(s) 1251, 1293, 1303
BseYI CCCAGC 1 cut(s) 245
BshFI GGCC 4 cut(s) 170, 197, 1598, 1789
BsiHKAI GWGCWC 4 cut(s) 1140, 1356, 1377, 1885
BsiSI CCGG 2 cut(s) 1202, 1874
BslI CCNNNNNNNGG 3 cut(s) 104, 165, 1440
BsmAI GTCTC 3 cut(s) 122, 565, 693
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 4 cut(s) 170, 197, 1598, 1789
Bso31I GGTCTC 1 cut(s) 122
Bsp1286I GDGCHC 5 cut(s) 521, 1140, 1356, 1377, 1885
Bsp143I GATC 5 cut(s) 234, 804, 1143, 1774, 1859
Bsp19I CCATGG 2 cut(s) 171, 1162
BspACI CCGC 2 cut(s) 135, 226
BspANI GGCC 4 cut(s) 170, 197, 1598, 1789
BspCNI CTCAG 8 cut(s) 230, 399, 670, 691, 703, 754, 1032, 1501
BspHI TCATGA 2 cut(s) 231, 1348
BspLI GGNNCC 2 cut(s) 177, 617
BspMI ACCTGC 1 cut(s) 122
BspOI GCTAGC 1 cut(s) 1632
BspPI GGATC 3 cut(s) 812, 1769, 1867
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 3 cut(s) 1468, 1691, 1755
BsrI ACTGG 3 cut(s) 532, 683, 814
BssECI CCNNGG 4 cut(s) 171, 832, 1162, 1872
BssMI GATC 5 cut(s) 234, 804, 1143, 1774, 1859
BssT1I CCWWGG 2 cut(s) 171, 1162
Bst2UI CCWGG 3 cut(s) 194, 430, 833
Bst4CI ACNGT 4 cut(s) 598, 718, 1750, 1887
Bst6I CTCTTC 7 cut(s) 41, 218, 262, 863, 880, 888, 1656
BstC8I GCNNGC 1 cut(s) 1630
BstDEI CTNAG 8 cut(s) 217, 407, 657, 690, 699, 762, 1019, 1509
BstDSI CCRYGG 2 cut(s) 171, 1162
BstEII GGTNACC 1 cut(s) 206
BstENI CCTNNNNNAGG 1 cut(s) 163
BstF5I GGATG 2 cut(s) 1213, 1552
BstH2I RGCGCY 1 cut(s) 1635
BstHHI GCGC 1 cut(s) 1634
BstKTI GATC 5 cut(s) 237, 807, 1146, 1777, 1862
BstMAI GTCTC 3 cut(s) 122, 565, 693
BstMBI GATC 5 cut(s) 234, 804, 1143, 1774, 1859
BstMWI GCNNNNNNNGC 6 cut(s) 114, 700, 1303, 1325, 1430, 1751
BstNI CCWGG 3 cut(s) 194, 430, 833
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 5 cut(s) 192, 428, 831, 1200, 1872
BstSFI CTRYAG 1 cut(s) 630
BstSLI GKGCMC 2 cut(s) 521, 1377
BstV1I GCAGC 3 cut(s) 1251, 1293, 1303
BstX2I RGATCY 2 cut(s) 1143, 1774
BstYI RGATCY 2 cut(s) 1143, 1774
BsuRI GGCC 4 cut(s) 170, 197, 1598, 1789
BtgI CCRYGG 2 cut(s) 171, 1162
BtgZI GCGATG 1 cut(s) 1842
BtsCI GGATG 2 cut(s) 1213, 1552
BtsIMutI CAGTG 3 cut(s) 225, 690, 807
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 1630
CciI TCATGA 2 cut(s) 231, 1348
CfoI GCGC 1 cut(s) 1634
Cfr13I GGNCC 5 cut(s) 92, 168, 277, 616, 829
Csp6I GTAC 2 cut(s) 464, 994
CspCI CAANNNNNGTGG 2 cut(s) 1779, 1814
CviAII CATG 9 cut(s) 144, 172, 232, 1163, 1260, 1268, 1349, 1417, 1716
CviQI GTAC 2 cut(s) 464, 994
DdeI CTNAG 8 cut(s) 217, 407, 657, 690, 699, 762, 1019, 1509
DpnI GATC 5 cut(s) 236, 806, 1145, 1776, 1861
DpnII GATC 5 cut(s) 234, 804, 1143, 1774, 1859
Eam1104I CTCTTC 7 cut(s) 41, 218, 262, 863, 880, 888, 1656
EarI CTCTTC 7 cut(s) 41, 218, 262, 863, 880, 888, 1656
Ecl136II GAGCTC 1 cut(s) 1138
Eco130I CCWWGG 2 cut(s) 171, 1162
Eco24I GRGCYC 1 cut(s) 1140
Eco31I GGTCTC 1 cut(s) 122
Eco32I GATATC 1 cut(s) 1846
Eco47I GGWCC 4 cut(s) 92, 277, 616, 829
Eco47III AGCGCT 1 cut(s) 1633
Eco53kI GAGCTC 1 cut(s) 1138
Eco91I GGTNACC 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 1138
EcoNI CCTNNNNNAGG 1 cut(s) 163
EcoO65I GGTNACC 1 cut(s) 206
EcoRII CCWGG 3 cut(s) 192, 428, 831
EcoRV GATATC 1 cut(s) 1846
EcoT14I CCWWGG 2 cut(s) 171, 1162
EcoT38I GRGCYC 1 cut(s) 1140
ErhI CCWWGG 2 cut(s) 171, 1162
FaeI CATG 9 cut(s) 147, 175, 235, 1166, 1263, 1271, 1352, 1420, 1719
FatI CATG 9 cut(s) 143, 171, 231, 1162, 1259, 1267, 1348, 1416, 1715
Fnu4HI GCNGC 4 cut(s) 226, 1265, 1307, 1317
FokI GGATG 2 cut(s) 1220, 1559
FriOI GRGCYC 1 cut(s) 1140
Fsp4HI GCNGC 4 cut(s) 226, 1265, 1307, 1317
FspBI CTAG 6 cut(s) 557, 1181, 1223, 1359, 1574, 1629
GlaI GCGC 1 cut(s) 1633
GluI GCNGC 4 cut(s) 226, 1265, 1307, 1317
GsaI CCCAGC 1 cut(s) 249
HaeII RGCGCY 1 cut(s) 1635
HaeIII GGCC 4 cut(s) 170, 197, 1598, 1789
HapII CCGG 2 cut(s) 1202, 1874
HhaI GCGC 1 cut(s) 1634
Hin1II CATG 9 cut(s) 147, 175, 235, 1166, 1263, 1271, 1352, 1420, 1719
Hin6I GCGC 1 cut(s) 1632
HinP1I GCGC 1 cut(s) 1632
HincII GTYRAC 3 cut(s) 328, 594, 1536
HindII GTYRAC 3 cut(s) 328, 594, 1536
HinfI GANTC 5 cut(s) 396, 901, 907, 1409, 1712
HpaII CCGG 2 cut(s) 1202, 1874
HphI GGTGA 9 cut(s) 62, 218, 261, 392, 720, 726, 735, 874, 1186
Hpy188I TCNGA 6 cut(s) 395, 583, 906, 979, 1022, 1487
Hpy188III TCNNGA 7 cut(s) 179, 188, 232, 373, 698, 1141, 1349
HpyCH4III ACNGT 4 cut(s) 598, 718, 1750, 1887
HpyCH4IV ACGT 1 cut(s) 546
HpyF10VI GCNNNNNNNGC 6 cut(s) 114, 700, 1303, 1325, 1430, 1751
HpyF3I CTNAG 8 cut(s) 217, 407, 657, 690, 699, 762, 1019, 1509
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 9 cut(s) 147, 175, 235, 1166, 1263, 1271, 1352, 1420, 1719
HspAI GCGC 1 cut(s) 1632
Kzo9I GATC 5 cut(s) 234, 804, 1143, 1774, 1859
LmnI GCTCC 5 cut(s) 14, 181, 1135, 1699, 1873
Lsp1109I GCAGC 3 cut(s) 1251, 1293, 1303
LweI GCATC 1 cut(s) 1198
MaeI CTAG 6 cut(s) 557, 1181, 1223, 1359, 1574, 1629
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 3 cut(s) 206, 380, 487
MalI GATC 5 cut(s) 236, 806, 1145, 1776, 1861
MboI GATC 5 cut(s) 234, 804, 1143, 1774, 1859
MfeI CAATTG 1 cut(s) 480
MflI RGATCY 2 cut(s) 1143, 1774
MhlI GDGCHC 5 cut(s) 521, 1140, 1356, 1377, 1885
MluCI AATT 5 cut(s) 480, 1048, 1168, 1435, 1832
MlyI GAGTC 3 cut(s) 390, 1403, 1706
MmeI TCCRAC 4 cut(s) 418, 598, 1437, 1465
MseI TTAA 4 cut(s) 642, 1086, 1107, 1289
MslI CAYNNNNRTG 3 cut(s) 371, 683, 1472
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 2 cut(s) 1202, 1874
MspR9I CCNGG 5 cut(s) 194, 430, 833, 1202, 1874
MunI CAATTG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 3 cut(s) 194, 430, 833
MwoI GCNNNNNNNGC 6 cut(s) 114, 700, 1303, 1325, 1430, 1751
NciI CCSGG 2 cut(s) 1202, 1874
NcoI CCATGG 2 cut(s) 171, 1162
NdeII GATC 5 cut(s) 234, 804, 1143, 1774, 1859
NheI GCTAGC 1 cut(s) 1628
NlaIII CATG 9 cut(s) 147, 175, 235, 1166, 1263, 1271, 1352, 1420, 1719
NlaIV GGNNCC 2 cut(s) 177, 617
NmuCI GTSAC 2 cut(s) 206, 380
OliI CACNNNNGTG 1 cut(s) 371
PagI TCATGA 2 cut(s) 231, 1348
PctI GAATGC 1 cut(s) 433
PfeI GAWTC 2 cut(s) 901, 907
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 4 cut(s) 227, 1266, 1308, 1318
PleI GAGTC 3 cut(s) 390, 1403, 1706
PpsI GAGTC 3 cut(s) 390, 1403, 1706
PshBI ATTAAT 2 cut(s) 1086, 1107
Psp124BI GAGCTC 1 cut(s) 1140
Psp6I CCWGG 3 cut(s) 192, 428, 831
PspEI GGTNACC 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 245
PspGI CCWGG 3 cut(s) 192, 428, 831
PspN4I GGNNCC 2 cut(s) 177, 617
PspPI GGNCC 5 cut(s) 92, 168, 277, 616, 829
PsuI RGATCY 2 cut(s) 1143, 1774
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 2 cut(s) 465, 995
RsaNI GTAC 2 cut(s) 464, 994
RseI CAYNNNNRTG 3 cut(s) 371, 683, 1472
SacI GAGCTC 1 cut(s) 1140
SaqAI TTAA 4 cut(s) 642, 1086, 1107, 1289
SatI GCNGC 4 cut(s) 226, 1265, 1307, 1317
Sau3AI GATC 5 cut(s) 234, 804, 1143, 1774, 1859
Sau96I GGNCC 5 cut(s) 92, 168, 277, 616, 829
SchI GAGTC 3 cut(s) 390, 1403, 1706
ScrFI CCNGG 5 cut(s) 194, 430, 833, 1202, 1874
SduI GDGCHC 5 cut(s) 521, 1140, 1356, 1377, 1885
SfaNI GCATC 1 cut(s) 1198
SfcI CTRYAG 1 cut(s) 630
SinI GGWCC 4 cut(s) 92, 277, 616, 829
SmiMI CAYNNNNRTG 3 cut(s) 371, 683, 1472
SmlI CTYRAG 3 cut(s) 84, 1139, 1491
SmoI CTYRAG 3 cut(s) 84, 1139, 1491
Sse9I AATT 5 cut(s) 480, 1048, 1168, 1435, 1832
SsiI CCGC 2 cut(s) 135, 226
SspI AATATT 2 cut(s) 1084, 1399
SspMI CTAG 6 cut(s) 557, 1181, 1223, 1359, 1574, 1629
SstI GAGCTC 1 cut(s) 1140
StyD4I CCNGG 5 cut(s) 192, 428, 831, 1200, 1872
StyI CCWWGG 2 cut(s) 171, 1162
TaaI ACNGT 4 cut(s) 598, 718, 1750, 1887
TaiI ACGT 1 cut(s) 549
TaqII GACCGA 1 cut(s) 313
TasI AATT 5 cut(s) 480, 1048, 1168, 1435, 1832
TatI WGTACW 1 cut(s) 993
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 2 cut(s) 901, 907
Tru1I TTAA 4 cut(s) 642, 1086, 1107, 1289
Tru9I TTAA 4 cut(s) 642, 1086, 1107, 1289
TscAI CASTG 3 cut(s) 225, 690, 814
TseFI GTSAC 2 cut(s) 206, 380
TseI GCWGC 3 cut(s) 1264, 1306, 1316
Tsp45I GTSAC 2 cut(s) 206, 380
TspRI CASTG 3 cut(s) 225, 690, 814
Van91I CCANNNNNTGG 1 cut(s) 104
VneI GTGCAC 1 cut(s) 1373
VpaK11BI GGWCC 4 cut(s) 92, 277, 616, 829
VspI ATTAAT 2 cut(s) 1086, 1107
XagI CCTNNNNNAGG 1 cut(s) 163
XspI CTAG 6 cut(s) 557, 1181, 1223, 1359, 1574, 1629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.