Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006402

Physical Location & Seq

Genomic Coordinates Forward (+)

18355102 .. 18356366

Gene Structure 1265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1203800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAAGTATAAGGTGAAAGATAACAAAGTGAACCATGTGCAGAAACTTACAATTTGGTTTTTAGTCATTCTATTTAGTTCAGTTGTTTGTTGGAGAGTATTGCAGGGCCCATTCAGTTGTTGGAATCATTTTTCATGTTATTTTAATAGGTTTGGTGAGGTAAACCATGGCAATTTGGTGAAGCTGGAGGGTTTCTGCATAGACTCGGAGGATGATTGTTGCTATCTAATTTACGAGTATGTAGAAAATGGTTCTCTTTATTCATTGCTGCATGAAAACAAGAATGAAAAATTGAGTTGGAAGACAAGGCTGCAAGTTGCTATTGACGTTGCAAACGGTCTCCAATACATTCACGAGCACACTAGGCCGAGGGTTGTGCACAAAGACATCAAGAGCAGCAATATTCTCTTAGATTCGAACATGAGAGCCAAAATAGCCAATTTTGGGCTAGCAAAGTCTGGTTGCAATGCCATAACAATGCACATTGTTGGAACTCAAGGCTACATTGCACCAGAGTATCTAGCTGACGGGGTGGTGTCAACGAAAATGGATGTTTTTTCTTTTGGAGTGGTGTTATTAGAGCTCATTTCGGGGAAGGAGGCGATTGATGAAGATGGAAATGTTTTGTGGACAAGTGCTGGTAGGATTTTGGAGGGAAATGAGGAAGAGAAGGCAAGGAAACTCAGGGAGTGGGTGGACAATGAACTTTTCTTGGAGTCATGCTCAATTGAGAGCATACTGAATGTTGTGACTGTTGCCATTGCTTGTTTGCATAAAGATCCTTCAAAAAGGCCAACTATGGTGGATATTGTCTATGCCTTGAGTAAGAGTGATGATTTGTTTTTTGACATCTCCGATAATGGATCATCGGCTCCCCCAGTAAGAGCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

298

Amino Acids

33.59

Weight (kDa)

5.87

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	51 - 273	7.3e-36	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	53 - 271	8.3e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02221
malus_domestica	MD13G1203700.v1.1 MD13G1203800.v1.1 MD16G1205900.v1.1
prunus_persica	Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1
pyrus_communis	pycom13g17710 pycom16g17320
rosa_chinensis	RchiOBHm_Chr4g0389541
rosa_laevigata	RLG00000009973 RLG00000009975
rosa_multiflora	Rmu_co8296341.1_g000001 Rmu_co8368025.1_g000001 Rmu_sc0002498.1_g000001 Rmu_sc0003347.1_g000004 Rmu_sc0003582.1_g000008 Rmu_sc0016342.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335500
rosa_rugosa	Rorug03G0323800
rosa_samantha	Rh4AG028200 Rh4BG021400 Rh4CG030100 Rh4DG021900
rosa_wichuraiana	Rw0G017330 Rw4G002050 Rw4G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	773, 871
AfiI	CCNNNNNNNGG	1 cut(s)	444
AgsI	TTSAA	1 cut(s)	786
AluBI	AGCT	3 cut(s)	184, 524, 583
AluI	AGCT	3 cut(s)	184, 524, 583
Alw21I	GWGCWC	3 cut(s)	360, 381, 585
Alw26I	GTCTC	1 cut(s)	344
Alw44I	GTGCAC	1 cut(s)	377
AlwI	GGATC	2 cut(s)	773, 871
AoxI	GGCC	3 cut(s)	106, 365, 791
ApaI	GGGCCC	1 cut(s)	110
ApaLI	GTGCAC	1 cut(s)	377
ApeKI	GCWGC	3 cut(s)	268, 310, 396
AspS9I	GGNCC	2 cut(s)	106, 107
AsuHPI	GGTGA	3 cut(s)	25, 167, 190
AsuII	TTCGAA	1 cut(s)	416
AsuNHI	GCTAGC	1 cut(s)	448
BaeGI	GKGCMC	2 cut(s)	110, 381
BaeI	ACNNNNGTAYC	2 cut(s)	500, 533
BanII	GRGCYC	2 cut(s)	110, 585
BauI	CACGAG	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	3 cut(s)	360, 381, 585
BbvI	GCAGC	3 cut(s)	255, 297, 408
BccI	CCATC	1 cut(s)	608
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	3 cut(s)	363, 449, 521
BisI	GCNGC	3 cut(s)	269, 311, 397
BlsI	GCNGC	3 cut(s)	270, 312, 398
BmgT120I	GGNCC	2 cut(s)	106, 107
BmiI	GGNNCC	2 cut(s)	108, 873
BmrI	ACTGGG	1 cut(s)	872
BmtI	GCTAGC	1 cut(s)	452
BmuI	ACTGGG	1 cut(s)	872
BpiI	GAAGAC	1 cut(s)	308
BplI	GAGNNNNNCTC	2 cut(s)	707, 739
BpmI	CTGGAG	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	416
BpuEI	CTTGAG	2 cut(s)	480, 841
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	166, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse1I	ACTGG	1 cut(s)	878
Bse3DI	GCAATG	4 cut(s)	263, 472, 504, 759
BseDI	CCNNGG	2 cut(s)	166, 368
BseGI	GGATG	2 cut(s)	217, 556
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	4 cut(s)	263, 472, 504, 759
BseMII	CTCAG	1 cut(s)	697
BseNI	ACTGG	1 cut(s)	878
BseSI	GKGCMC	2 cut(s)	110, 381
BseXI	GCAGC	3 cut(s)	255, 297, 408
BsgI	GTGCAG	1 cut(s)	59
BshFI	GGCC	3 cut(s)	108, 367, 793
BsiHKAI	GWGCWC	3 cut(s)	360, 381, 585
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	1 cut(s)	344
BsnI	GGCC	3 cut(s)	108, 367, 793
Bso31I	GGTCTC	1 cut(s)	344
Bsp119I	TTCGAA	1 cut(s)	416
Bsp120I	GGGCCC	1 cut(s)	106
Bsp1286I	GDGCHC	4 cut(s)	110, 360, 381, 585
Bsp143I	GATC	2 cut(s)	778, 863
Bsp19I	CCATGG	1 cut(s)	166
BspANI	GGCC	3 cut(s)	108, 367, 793
BspCNI	CTCAG	1 cut(s)	696
BspLI	GGNNCC	2 cut(s)	108, 873
BspOI	GCTAGC	1 cut(s)	452
BspPI	GGATC	2 cut(s)	773, 871
BspT104I	TTCGAA	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	344
BsrDI	GCAATG	4 cut(s)	263, 472, 504, 759
BsrI	ACTGG	1 cut(s)	878
BssECI	CCNNGG	2 cut(s)	166, 368
BssMI	GATC	2 cut(s)	778, 863
BssSI	CACGAG	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	338, 754
Bst6I	CTCTTC	1 cut(s)	660
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	2 cut(s)	409, 683
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	2 cut(s)	217, 556
BstKTI	GATC	2 cut(s)	781, 866
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	2 cut(s)	778, 863
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 434
BstSLI	GKGCMC	2 cut(s)	110, 381
BstV1I	GCAGC	3 cut(s)	255, 297, 408
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	778
BstYI	RGATCY	1 cut(s)	778
BsuRI	GGCC	3 cut(s)	108, 367, 793
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	217, 556
Cac8I	GCNNGC	1 cut(s)	450
Cfr13I	GGNCC	2 cut(s)	106, 107
CspCI	CAANNNNNGTGG	2 cut(s)	783, 818
CviAII	CATG	6 cut(s)	35, 135, 167, 272, 421, 720
DdeI	CTNAG	2 cut(s)	409, 683
DpnI	GATC	2 cut(s)	780, 865
DpnII	GATC	2 cut(s)	778, 863
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Ecl136II	GAGCTC	1 cut(s)	583
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	2 cut(s)	110, 585
Eco31I	GGTCTC	1 cut(s)	344
Eco53kI	GAGCTC	1 cut(s)	583
EcoICRI	GAGCTC	1 cut(s)	583
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	2 cut(s)	110, 585
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	6 cut(s)	38, 138, 170, 275, 424, 723
FatI	CATG	6 cut(s)	34, 134, 166, 271, 420, 719
Fnu4HI	GCNGC	3 cut(s)	269, 311, 397
FokI	GGATG	2 cut(s)	224, 563
FriOI	GRGCYC	2 cut(s)	110, 585
Fsp4HI	GCNGC	3 cut(s)	269, 311, 397
FspBI	CTAG	3 cut(s)	363, 449, 521
GluI	GCNGC	3 cut(s)	269, 311, 397
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	3 cut(s)	108, 367, 793
Hin1II	CATG	6 cut(s)	38, 138, 170, 275, 424, 723
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	4 cut(s)	124, 203, 413, 716
HphI	GGTGA	3 cut(s)	25, 167, 190
Hpy166II	GTNNAC	6 cut(s)	31, 163, 379, 540, 630, 697
Hpy188I	TCNGA	2 cut(s)	208, 856
Hpy188III	TCNNGA	2 cut(s)	353, 391
Hpy8I	GTNNAC	6 cut(s)	31, 163, 379, 540, 630, 697
HpyAV	CCTTC	3 cut(s)	589, 664, 792
HpyCH4III	ACNGT	2 cut(s)	338, 754
HpyCH4IV	ACGT	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 434
HpyF3I	CTNAG	2 cut(s)	409, 683
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	6 cut(s)	38, 138, 170, 275, 424, 723
Kzo9I	GATC	2 cut(s)	778, 863
LmnI	GCTCC	1 cut(s)	877
LpnPI	CCDG	6 cut(s)	89, 170, 444, 525, 624, 670
Lsp1109I	GCAGC	3 cut(s)	255, 297, 408
MaeI	CTAG	3 cut(s)	363, 449, 521
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	2 cut(s)	780, 865
MboI	GATC	2 cut(s)	778, 863
MboII	GAAGA	3 cut(s)	313, 623, 677
MfeI	CAATTG	1 cut(s)	726
MflI	RGATCY	1 cut(s)	778
MhlI	GDGCHC	4 cut(s)	110, 360, 381, 585
MluCI	AATT	6 cut(s)	51, 172, 228, 290, 439, 726
MlyI	GAGTC	2 cut(s)	197, 725
MmeI	TCCRAC	4 cut(s)	71, 101, 278, 469
MnlI	CCTC	7 cut(s)	151, 181, 202, 363, 592, 646, 655
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	476
MunI	CAATTG	1 cut(s)	726
MwoI	GCNNNNNNNGC	2 cut(s)	364, 434
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	2 cut(s)	778, 863
NheI	GCTAGC	1 cut(s)	448
NlaIII	CATG	6 cut(s)	38, 138, 170, 275, 424, 723
NlaIV	GGNNCC	2 cut(s)	108, 873
NmeAIII	GCCGAG	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	748
NspV	TTCGAA	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	124, 413
PkrI	GCNGC	3 cut(s)	270, 312, 398
PleI	GAGTC	2 cut(s)	197, 724
PpsI	GAGTC	2 cut(s)	197, 724
Psp124BI	GAGCTC	1 cut(s)	585
PspN4I	GGNNCC	2 cut(s)	108, 873
PspOMI	GGGCCC	1 cut(s)	106
PspPI	GGNCC	2 cut(s)	106, 107
PsuI	RGATCY	1 cut(s)	778
RseI	CAYNNNNRTG	1 cut(s)	476
SacI	GAGCTC	1 cut(s)	585
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	3 cut(s)	269, 311, 397
Sau3AI	GATC	2 cut(s)	778, 863
Sau96I	GGNCC	2 cut(s)	106, 107
SchI	GAGTC	2 cut(s)	197, 725
SduI	GDGCHC	4 cut(s)	110, 360, 381, 585
SetI	ASST	7 cut(s)	15, 152, 162, 186, 330, 526, 585
SfuI	TTCGAA	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	2 cut(s)	495, 820
SmoI	CTYRAG	2 cut(s)	495, 820
Sse9I	AATT	6 cut(s)	51, 172, 228, 290, 439, 726
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	3 cut(s)	363, 449, 521
SstI	GAGCTC	1 cut(s)	585
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	338, 754
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	1 cut(s)	416
TasI	AATT	6 cut(s)	51, 172, 228, 290, 439, 726
TfiI	GAWTC	2 cut(s)	124, 413
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	3 cut(s)	268, 310, 396
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	7 cut(s)	17, 123, 252, 288, 300, 624, 717
VneI	GTGCAC	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
XspI	CTAG	3 cut(s)	363, 449, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.