Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006402

Physical Location & Seq

Genomic Coordinates Forward (+)

13413657 .. 13419455

Gene Structure 5799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g17320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1878 bp

ATGAAAACCAAAACTCAGAACGTCTCCGCTGCCCTGCTCTTCTTCTTCTTCCTCAGCTGCCACCACCTCCTCCACCATGCAGAAGCTCAAGGTCCGACCACAGAAGGCTACACTTGCTCAGCCAACCAAACCACCTACTACCCCTGCCAGACCTACGCCTTCTACAGTGCCCTCTTCCCCGACTTCCTCGACCTCGCTGCCGTTGGCGACCTTTTCCAAGTCAGCCGCCTCATGATCTCCAAACCCAGCAACATCTCCTCCCCAACCGCCCCCCTGGTCCCCGGCCAGCCCCTCCTTGTCCCCCTCTCCTGCTCTTGCAACTCCCCCAACTCCTCCATCTCCATTTCCTACGCCAATATCTCCTACACCATCAAAGCCGGCGACACTTTCTACCAGGTCTCCACCCACAACTTCCAAGACCTCACCACCTACCAGTCCGTCGAGCTCGTAAACCCTAATCTGGTCGCCACCAACTTAAACATCGGAGTCACCGCCTATTTTCCTATCTTCTGCAAGTGCCCCAACAGAACCCAGGTCGGAAACCAAGTCAACTACCTCATCTCGTACGTTTTCCAGCCCTCTGACAACATCTCAACCGTTGCTTCATTGTTTGGGGTGCAAGAACATTCCATAACTGATTTAAACGGCGACAACATCCAGCCTTCTGACACGGTTTTCGTGCCAGTGACTCGCCTTCCGGTACTCTCCCAACCCACTGTTGCTCCTTCTGCTCCACCCTCTGGGAAGACAGAGAGGAAAGGAGTGATCACAGGGCTCGCAATTGGGCTGGGAATTACCGGGCTTTTGCTGGTTTTCGTCATCGGGTTTTCGATTTACAGAGACGGATTGCTGATGAAGAAGATTGGCGGGGAAGGAGATGAGGAGGAGAATAAGGTTCTGTACAGGAGCAAGCAGGGGTCAAAGAGGTCGAAGGAAATGGAGGTGAATTTGATGGCGGATGTTTGGGATTGCTTGGACAAGTATAGAGTGTTTGGGATTGAAGAGTTGAGAGAGGCCACAGACGGGTTCAGCGATGGTAGCTTGATTGAAGGGTCTGTGTATAAAGGTTCCATTAATGGAGATTACTATGCCATTAAGAAGATGAAGTGGAACGCCTATGAGGAGCTCAAGATCTTACAAAAGGTAAACCATGGCAATTTGGTGAAGCTAGAGGGCTTCTGCATAGATCAGGAGGATGATTCTTGCTATCTAATTTACGAGTATGTCGAAAATGGTTCTCTTTATTCATGGTTGCATCATAACCAGAGGGAAAAATTGAGTTGGAAGACAAGGCTGCGAGTTGCTATCGACGTTGCAAACGGTCTCCTATACATTCATGAGCACACTAGGCCGAGGGTTGTGCACAAAGACATCAAGAGCAGCAATATTCTATTAGATTCGAACATGAGAGCGAAAATAGCAAATTTTGGGCTAGCAAAGACCGGTTGCAATGCCATAACAATGCACATTGTTGGAACTCAAGGTTACATTGCACCCGAGTATCTAGCTGACGGGGTGGTATCGACAAAAATGGATGTTTTGTCTTTTGGGGTGGTTTTATTAGAGCTTGTTTCGGGGAAGGAGGCGGTTGATGAAGATGGAAATGTTTTGTGGGCAAGTGCTGGTAGTATTTTGGAGGGAAATGAGGAAGAGAAGGCAAGGAAACTCAGGGAGTGGGTGGACAGTGAACTTGTCTTGGAGTCGTTCTCAATGGAGAGCATAGTGAATGTTGTGACTGTTGCCATTGCTTGTGTGCATAAAGATTCTTCAAAAAGGCCAACCATGGTGGATATTGTCTATGCCTTGTGTAAGAGTGATGATTTGTTTTTTGACATCTCCGATGATGGATCATCGGCTCCCCCAGTAAGAGCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

626

Amino Acids

68.95

Weight (kDa)

5.34

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	49 - 106	3.4e-16	NFP/LYK LysM1 domain
LysM2_NFP	PF23457	116 - 170	3.3e-22	NFP LysM2 domain
LysM2_CERK1_LYK3_4_5	PF23472	118 - 164	1.1e-06	LYK3/4/5 LysM2 domain
LysM3_NFP	PF23462	185 - 229	1.8e-07	NFP LysM3 domain
Pkinase	PF00069	359 - 599	5.5e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	369 - 600	4.8e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02221
malus_domestica	MD13G1203700.v1.1 MD13G1203800.v1.1 MD16G1205900.v1.1
prunus_persica	Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1 Prupe.1G027000_v2.0.a1
pyrus_communis	pycom13g17710 pycom16g17320
rosa_chinensis	RchiOBHm_Chr4g0389541
rosa_laevigata	RLG00000009973 RLG00000009975
rosa_multiflora	Rmu_co8296341.1_g000001 Rmu_co8368025.1_g000001 Rmu_sc0002498.1_g000001 Rmu_sc0003347.1_g000004 Rmu_sc0003582.1_g000008 Rmu_sc0016342.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335500
rosa_rugosa	Rorug03G0323800
rosa_samantha	Rh4AG028200 Rh4BG021400 Rh4CG030100 Rh4DG021900
rosa_wichuraiana	Rw0G017330 Rw4G002050 Rw4G002090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	740
AciI	CCGC	7 cut(s)	27, 226, 267, 492, 867, 956, 1586
AclWI	GGATC	1 cut(s)	1855
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	946, 1423
AfaI	GTAC	3 cut(s)	566, 702, 902
AfiI	CCNNNNNNNGG	3 cut(s)	460, 740, 1023
AgeI	ACCGGT	1 cut(s)	1442
AgsI	TTSAA	3 cut(s)	1001, 1049, 1770
AjnI	CCWGG	3 cut(s)	273, 393, 531
AluBI	AGCT	8 cut(s)	57, 86, 445, 1041, 1126, 1168, 1508, 1567
AluI	AGCT	8 cut(s)	57, 86, 445, 1041, 1126, 1168, 1508, 1567
Alw21I	GWGCWC	4 cut(s)	447, 1128, 1344, 1365
Alw26I	GTCTC	4 cut(s)	28, 403, 834, 1328
Alw44I	GTGCAC	1 cut(s)	1361
AlwI	GGATC	1 cut(s)	1855
Ama87I	CYCGRG	1 cut(s)	1496
AoxI	GGCC	4 cut(s)	283, 1014, 1349, 1775
ApaLI	GTGCAC	1 cut(s)	1361
ApeKI	GCWGC	5 cut(s)	29, 57, 197, 1294, 1380
ApoI	RAATTY	2 cut(s)	946, 1423
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
AseI	ATTAAT	1 cut(s)	1074
AsiGI	ACCGGT	1 cut(s)	1442
AspS9I	GGNCC	2 cut(s)	92, 277
AsuC2I	CCSGG	2 cut(s)	282, 799
AsuHPI	GGTGA	4 cut(s)	415, 481, 955, 1174
AsuII	TTCGAA	1 cut(s)	1400
AsuNHI	GCTAGC	1 cut(s)	1432
AvaI	CYCGRG	1 cut(s)	1496
AvaII	GGWCC	2 cut(s)	92, 277
BaeGI	GKGCMC	3 cut(s)	172, 521, 1365
BaeI	ACNNNNGTAYC	2 cut(s)	1484, 1517
BanII	GRGCYC	3 cut(s)	447, 777, 1128
BbsI	GAAGAC	2 cut(s)	752, 1292
Bbv12I	GWGCWC	4 cut(s)	447, 1128, 1344, 1365
BbvCI	CCTCAGC	1 cut(s)	53
BbvI	GCAGC	5 cut(s)	16, 44, 184, 1281, 1392
BccI	CCATC	6 cut(s)	344, 377, 946, 1028, 1592, 1838
BceAI	ACGGC	2 cut(s)	185, 661
BcgI	CGANNNNNNTGC	4 cut(s)	179, 213, 1342, 1376
BciT130I	CCWGG	3 cut(s)	275, 395, 533
BclI	TGATCA	1 cut(s)	765
BcnI	CCSGG	2 cut(s)	282, 799
BcoDI	GTCTC	4 cut(s)	28, 403, 834, 1328
BfaI	CTAG	4 cut(s)	1169, 1347, 1433, 1505
BfmI	CTRYAG	1 cut(s)	163
BglII	AGATCT	1 cut(s)	1131
BisI	GCNGC	6 cut(s)	30, 58, 198, 226, 1295, 1381
BlpI	GCTNAGC	1 cut(s)	118
BlsI	GCNGC	6 cut(s)	31, 59, 199, 227, 1296, 1382
Bme1390I	CCNGG	5 cut(s)	275, 282, 395, 533, 799
Bme18I	GGWCC	2 cut(s)	92, 277
BmeT110I	CYCGRG	1 cut(s)	1496
BmgT120I	GGNCC	2 cut(s)	92, 277
BmiI	GGNNCC	3 cut(s)	279, 1069, 1857
BmrFI	CCNGG	5 cut(s)	275, 282, 395, 533, 799
BmrI	ACTGGG	1 cut(s)	1856
BmsI	GCATC	1 cut(s)	1264
BmtI	GCTAGC	1 cut(s)	1436
BmuI	ACTGGG	1 cut(s)	1856
BpiI	GAAGAC	2 cut(s)	752, 1292
BplI	GAGNNNNNCTC	2 cut(s)	1691, 1723
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	118
Bpu14I	TTCGAA	1 cut(s)	1400
BpuEI	CTTGAG	3 cut(s)	72, 1112, 1464
BpuMI	CCSGG	2 cut(s)	282, 799
BsaI	GGTCTC	2 cut(s)	403, 1328
BsaJI	CCNNGG	6 cut(s)	273, 280, 531, 1150, 1352, 1782
BsaWI	WCCGGW	2 cut(s)	697, 1442
BsaXI	ACNNNNNCTCC	6 cut(s)	242, 272, 383, 413, 706, 736
Bsc4I	CCNNNNNNNGG	3 cut(s)	460, 740, 1023
Bse118I	RCCGGY	2 cut(s)	377, 1442
Bse1I	ACTGG	3 cut(s)	433, 683, 1862
Bse3DI	GCAATG	3 cut(s)	1456, 1488, 1743
BseBI	CCWGG	3 cut(s)	275, 395, 533
BseDI	CCNNGG	6 cut(s)	273, 280, 531, 1150, 1352, 1782
BseGI	GGATG	4 cut(s)	654, 964, 1201, 1540
BseLI	CCNNNNNNNGG	3 cut(s)	460, 740, 1023
BseMI	GCAATG	3 cut(s)	1456, 1488, 1743
BseMII	CTCAG	4 cut(s)	29, 67, 132, 1681
BseNI	ACTGG	3 cut(s)	433, 683, 1862
BseRI	GAGGAG	6 cut(s)	59, 247, 322, 896, 899, 1136
BseSI	GKGCMC	3 cut(s)	172, 521, 1365
BseXI	GCAGC	5 cut(s)	16, 44, 184, 1281, 1392
BseYI	CCCAGC	2 cut(s)	245, 787
BshFI	GGCC	4 cut(s)	285, 1016, 1351, 1777
BshTI	ACCGGT	1 cut(s)	1442
BsiHKAI	GWGCWC	4 cut(s)	447, 1128, 1344, 1365
BsiHKCI	CYCGRG	1 cut(s)	1496
BsiSI	CCGG	5 cut(s)	282, 378, 698, 798, 1443
BsiWI	CGTACG	1 cut(s)	564
BslFI	GGGAC	2 cut(s)	263, 284
BslI	CCNNNNNNNGG	3 cut(s)	460, 740, 1023
BsmAI	GTCTC	4 cut(s)	28, 403, 834, 1328
BsmBI	CGTCTC	2 cut(s)	28, 834
BsmFI	GGGAC	2 cut(s)	263, 284
BsnI	GGCC	4 cut(s)	285, 1016, 1351, 1777
Bso31I	GGTCTC	2 cut(s)	403, 1328
BsoBI	CYCGRG	1 cut(s)	1496
Bsp119I	TTCGAA	1 cut(s)	1400
Bsp1286I	GDGCHC	7 cut(s)	172, 447, 521, 777, 1128, 1344, 1365
Bsp1407I	TGTACA	1 cut(s)	900
Bsp143I	GATC	5 cut(s)	234, 765, 1131, 1186, 1847
Bsp1720I	GCTNAGC	1 cut(s)	118
Bsp19I	CCATGG	2 cut(s)	1150, 1782
BspACI	CCGC	7 cut(s)	27, 226, 267, 492, 867, 956, 1586
BspANI	GGCC	4 cut(s)	285, 1016, 1351, 1777
BspCNI	CTCAG	4 cut(s)	28, 66, 131, 1680
BspHI	TCATGA	2 cut(s)	231, 1336
BspLI	GGNNCC	3 cut(s)	279, 1069, 1857
BspOI	GCTAGC	1 cut(s)	1436
BspPI	GGATC	1 cut(s)	1855
BspQI	GCTCTTC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	1400
BspTNI	GGTCTC	2 cut(s)	403, 1328
BsrDI	GCAATG	3 cut(s)	1456, 1488, 1743
BsrFI	RCCGGY	2 cut(s)	377, 1442
BsrGI	TGTACA	1 cut(s)	900
BsrI	ACTGG	3 cut(s)	433, 683, 1862
BssAI	RCCGGY	2 cut(s)	377, 1442
BssECI	CCNNGG	6 cut(s)	273, 280, 531, 1150, 1352, 1782
BssMI	GATC	5 cut(s)	234, 765, 1131, 1186, 1847
BssT1I	CCWWGG	2 cut(s)	1150, 1782
Bst2UI	CCWGG	3 cut(s)	275, 395, 533
Bst4CI	ACNGT	7 cut(s)	167, 598, 673, 718, 1322, 1685, 1738
Bst6I	CTCTTC	4 cut(s)	44, 179, 996, 1644
BstAUI	TGTACA	1 cut(s)	900
BstBI	TTCGAA	1 cut(s)	1400
BstC8I	GCNNGC	5 cut(s)	287, 379, 777, 911, 1434
BstDEI	CTNAG	4 cut(s)	15, 53, 118, 1667
BstDSI	CCRYGG	2 cut(s)	1150, 1782
BstF5I	GGATG	4 cut(s)	654, 964, 1201, 1540
BstKTI	GATC	5 cut(s)	237, 768, 1134, 1189, 1850
BstMAI	GTCTC	4 cut(s)	28, 403, 834, 1328
BstMBI	GATC	5 cut(s)	234, 765, 1131, 1186, 1847
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 728, 1038, 1348, 1418
BstNI	CCWGG	3 cut(s)	275, 395, 533
BstSCI	CCNGG	5 cut(s)	273, 280, 393, 531, 797
BstSFI	CTRYAG	1 cut(s)	163
BstSLI	GKGCMC	3 cut(s)	172, 521, 1365
BstV1I	GCAGC	5 cut(s)	16, 44, 184, 1281, 1392
BstV2I	GAAGAC	2 cut(s)	752, 1292
BstX2I	RGATCY	1 cut(s)	1131
BstYI	RGATCY	1 cut(s)	1131
BsuRI	GGCC	4 cut(s)	285, 1016, 1351, 1777
BtgI	CCRYGG	2 cut(s)	1150, 1782
BtgZI	GCGATG	1 cut(s)	1047
BtsCI	GGATG	4 cut(s)	654, 964, 1201, 1540
BtsIMutI	CAGTG	4 cut(s)	172, 690, 714, 1690
Cac8I	GCNNGC	5 cut(s)	287, 379, 777, 911, 1434
CciI	TCATGA	2 cut(s)	231, 1336
Cfr10I	RCCGGY	2 cut(s)	377, 1442
Cfr13I	GGNCC	2 cut(s)	92, 277
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	3 cut(s)	565, 701, 901
CspAI	ACCGGT	1 cut(s)	1442
CspCI	CAANNNNNGTGG	2 cut(s)	1767, 1802
CviAII	CATG	7 cut(s)	77, 232, 1151, 1248, 1337, 1405, 1783
CviQI	GTAC	3 cut(s)	565, 701, 901
DdeI	CTNAG	4 cut(s)	15, 53, 118, 1667
DpnI	GATC	5 cut(s)	236, 767, 1133, 1188, 1849
DpnII	GATC	5 cut(s)	234, 765, 1131, 1186, 1847
DraI	TTTAAA	1 cut(s)	642
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	4 cut(s)	44, 179, 996, 1644
EarI	CTCTTC	4 cut(s)	44, 179, 996, 1644
EciI	GGCGGA	1 cut(s)	971
Ecl136II	GAGCTC	2 cut(s)	445, 1126
Eco130I	CCWWGG	2 cut(s)	1150, 1782
Eco24I	GRGCYC	3 cut(s)	447, 777, 1128
Eco31I	GGTCTC	2 cut(s)	403, 1328
Eco47I	GGWCC	2 cut(s)	92, 277
Eco53kI	GAGCTC	2 cut(s)	445, 1126
Eco88I	CYCGRG	1 cut(s)	1496
EcoICRI	GAGCTC	2 cut(s)	445, 1126
EcoRII	CCWGG	3 cut(s)	273, 393, 531
EcoT14I	CCWWGG	2 cut(s)	1150, 1782
EcoT38I	GRGCYC	3 cut(s)	447, 777, 1128
ErhI	CCWWGG	2 cut(s)	1150, 1782
Esp3I	CGTCTC	2 cut(s)	28, 834
FaeI	CATG	7 cut(s)	80, 235, 1154, 1251, 1340, 1408, 1786
FaqI	GGGAC	2 cut(s)	263, 284
FatI	CATG	7 cut(s)	76, 231, 1150, 1247, 1336, 1404, 1782
FauI	CCCGC	1 cut(s)	860
FbaI	TGATCA	1 cut(s)	765
Fnu4HI	GCNGC	6 cut(s)	30, 58, 198, 226, 1295, 1381
FokI	GGATG	4 cut(s)	641, 971, 1208, 1547
FriOI	GRGCYC	3 cut(s)	447, 777, 1128
Fsp4HI	GCNGC	6 cut(s)	30, 58, 198, 226, 1295, 1381
FspBI	CTAG	4 cut(s)	1169, 1347, 1433, 1505
GluI	GCNGC	6 cut(s)	30, 58, 198, 226, 1295, 1381
GsaI	CCCAGC	2 cut(s)	249, 791
HaeIII	GGCC	4 cut(s)	285, 1016, 1351, 1777
HapII	CCGG	5 cut(s)	282, 378, 698, 798, 1443
Hin1II	CATG	7 cut(s)	80, 235, 1154, 1251, 1340, 1408, 1786
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	6 cut(s)	486, 688, 1199, 1397, 1700, 1763
HpaII	CCGG	5 cut(s)	282, 378, 698, 798, 1443
HphI	GGTGA	4 cut(s)	415, 481, 955, 1174
Hpy166II	GTNNAC	6 cut(s)	451, 550, 1147, 1363, 1681, 1688
Hpy188I	TCNGA	7 cut(s)	18, 96, 485, 539, 583, 667, 1840
Hpy188III	TCNNGA	5 cut(s)	232, 1129, 1190, 1337, 1375
Hpy8I	GTNNAC	6 cut(s)	451, 550, 1147, 1363, 1681, 1688
Hpy99I	CGWCG	2 cut(s)	443, 1313
HpyCH4III	ACNGT	7 cut(s)	167, 598, 673, 718, 1322, 1685, 1738
HpyCH4IV	ACGT	3 cut(s)	21, 567, 1311
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 728, 1038, 1348, 1418
HpyF3I	CTNAG	4 cut(s)	15, 53, 118, 1667
HpySE526I	ACGT	3 cut(s)	21, 567, 1311
Hsp92II	CATG	7 cut(s)	80, 235, 1154, 1251, 1340, 1408, 1786
KroI	GCCGGC	1 cut(s)	377
KroNI	GCCGGC	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	765
Kzo9I	GATC	5 cut(s)	234, 765, 1131, 1186, 1847
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	5 cut(s)	727, 736, 906, 1123, 1861
Lsp1109I	GCAGC	5 cut(s)	16, 44, 184, 1281, 1392
LweI	GCATC	1 cut(s)	1264
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	4 cut(s)	1169, 1347, 1433, 1505
MaeII	ACGT	3 cut(s)	21, 567, 1311
MaeIII	GTNAC	4 cut(s)	487, 685, 1484, 1732
MalI	GATC	5 cut(s)	236, 767, 1133, 1188, 1849
MboI	GATC	5 cut(s)	234, 765, 1131, 1186, 1847
MfeI	CAATTG	1 cut(s)	780
MflI	RGATCY	1 cut(s)	1131
MhlI	GDGCHC	7 cut(s)	172, 447, 521, 777, 1128, 1344, 1365
MluCI	AATT	7 cut(s)	780, 792, 946, 1156, 1212, 1274, 1423
MlyI	GAGTC	3 cut(s)	495, 682, 1709
MmeI	TCCRAC	4 cut(s)	119, 517, 1262, 1453
MroNI	GCCGGC	1 cut(s)	377
MseI	TTAA	4 cut(s)	476, 641, 1074, 1095
MslI	CAYNNNNRTG	1 cut(s)	1460
MspA1I	CMGCKG	2 cut(s)	29, 57
MspI	CCGG	5 cut(s)	282, 378, 698, 798, 1443
MspR9I	CCNGG	5 cut(s)	275, 282, 395, 533, 799
MunI	CAATTG	1 cut(s)	780
MvaI	CCWGG	3 cut(s)	275, 395, 533
MwoI	GCNNNNNNNGC	5 cut(s)	114, 728, 1038, 1348, 1418
NaeI	GCCGGC	1 cut(s)	379
NciI	CCSGG	2 cut(s)	282, 799
NcoI	CCATGG	2 cut(s)	1150, 1782
NdeII	GATC	5 cut(s)	234, 765, 1131, 1186, 1847
NgoMIV	GCCGGC	1 cut(s)	377
NheI	GCTAGC	1 cut(s)	1432
NlaIII	CATG	7 cut(s)	80, 235, 1154, 1251, 1340, 1408, 1786
NlaIV	GGNNCC	3 cut(s)	279, 1069, 1857
NmeAIII	GCCGAG	1 cut(s)	1377
NmuCI	GTSAC	3 cut(s)	487, 685, 1732
NspV	TTCGAA	1 cut(s)	1400
PagI	TCATGA	2 cut(s)	231, 1336
PciSI	GCTCTTC	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	2 cut(s)	1029, 1224
PdiI	GCCGGC	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	1199, 1397, 1763
Pfl23II	CGTACG	1 cut(s)	564
PflMI	CCANNNNNTGG	1 cut(s)	740
PinAI	ACCGGT	1 cut(s)	1442
PkrI	GCNGC	6 cut(s)	31, 59, 199, 227, 1296, 1382
PleI	GAGTC	3 cut(s)	494, 682, 1708
PpsI	GAGTC	3 cut(s)	494, 682, 1708
PshBI	ATTAAT	1 cut(s)	1074
Psp124BI	GAGCTC	2 cut(s)	447, 1128
Psp6I	CCWGG	3 cut(s)	273, 393, 531
PspFI	CCCAGC	2 cut(s)	245, 787
PspGI	CCWGG	3 cut(s)	273, 393, 531
PspLI	CGTACG	1 cut(s)	564
PspN4I	GGNNCC	3 cut(s)	279, 1069, 1857
PspPI	GGNCC	2 cut(s)	92, 277
PsuI	RGATCY	1 cut(s)	1131
PvuII	CAGCTG	1 cut(s)	57
RsaI	GTAC	3 cut(s)	566, 702, 902
RsaNI	GTAC	3 cut(s)	565, 701, 901
RseI	CAYNNNNRTG	1 cut(s)	1460
SacI	GAGCTC	2 cut(s)	447, 1128
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	4 cut(s)	476, 641, 1074, 1095
SatI	GCNGC	6 cut(s)	30, 58, 198, 226, 1295, 1381
Sau3AI	GATC	5 cut(s)	234, 765, 1131, 1186, 1847
Sau96I	GGNCC	2 cut(s)	92, 277
SchI	GAGTC	3 cut(s)	495, 682, 1709
ScrFI	CCNGG	5 cut(s)	275, 282, 395, 533, 799
SduI	GDGCHC	7 cut(s)	172, 447, 521, 777, 1128, 1344, 1365
SexAI	ACCWGGT	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	1264
SfcI	CTRYAG	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	1400
SinI	GGWCC	2 cut(s)	92, 277
SmiMI	CAYNNNNRTG	1 cut(s)	1460
SmlI	CTYRAG	3 cut(s)	87, 1127, 1479
SmoI	CTYRAG	3 cut(s)	87, 1127, 1479
Sse9I	AATT	7 cut(s)	780, 792, 946, 1156, 1212, 1274, 1423
SsiI	CCGC	7 cut(s)	27, 226, 267, 492, 867, 956, 1586
SspI	AATATT	1 cut(s)	1387
SspMI	CTAG	4 cut(s)	1169, 1347, 1433, 1505
SstI	GAGCTC	2 cut(s)	447, 1128
StyD4I	CCNGG	5 cut(s)	273, 280, 393, 531, 797
StyI	CCWWGG	2 cut(s)	1150, 1782
TaaI	ACNGT	7 cut(s)	167, 598, 673, 718, 1322, 1685, 1738
TaiI	ACGT	3 cut(s)	24, 570, 1314
TaqI	TCGA	8 cut(s)	189, 441, 830, 929, 1227, 1308, 1400, 1523
TasI	AATT	7 cut(s)	780, 792, 946, 1156, 1212, 1274, 1423
TatI	WGTACW	1 cut(s)	900
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	3 cut(s)	1199, 1397, 1763
Tru1I	TTAA	4 cut(s)	476, 641, 1074, 1095
Tru9I	TTAA	4 cut(s)	476, 641, 1074, 1095
TscAI	CASTG	4 cut(s)	172, 690, 721, 1690
TseFI	GTSAC	3 cut(s)	487, 685, 1732
TseI	GCWGC	5 cut(s)	29, 57, 197, 1294, 1380
Tsp45I	GTSAC	3 cut(s)	487, 685, 1732
TspDTI	ATGAA	7 cut(s)	17, 594, 869, 1118, 1236, 1325, 1608
TspGWI	ACGGA	2 cut(s)	427, 858
TspRI	CASTG	4 cut(s)	172, 690, 721, 1690
Van91I	CCANNNNNTGG	1 cut(s)	740
VneI	GTGCAC	1 cut(s)	1361
VpaK11BI	GGWCC	2 cut(s)	92, 277
VspI	ATTAAT	1 cut(s)	1074
XapI	RAATTY	2 cut(s)	946, 1423
XspI	CTAG	4 cut(s)	1169, 1347, 1433, 1505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.