MD13G1232700.v1.1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0014277
Physical Location & Seq
Forward (+)
23176501 .. 23185974
9474 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1232700.v1.1.491

Sequence Viewer

Length: 1410 bp
ATGTGGTATAACAATGTTGATAATGGAAATAATAATCAAGGCGCGGGGATAATAGCAGTGGCAATCGACGACGGCGTCTCCAGCCAAAATGCTTTGAAATGGGCAATCGATCATCTCGTCTCTCGATCTACCAGCCAAGCTCCTATCAAGCTTGTCCATGTTATTCACCCATCCAATTCCAATAATACACTTCATGCAACAGCGAACAACCCATCAAATGAAGGGCAAGCTCACGATGCTCCAAATACAGATTTCTTACTTCCATTTCGTTGCTACTGTACGCGCAAACGAGTACAATGCGAGGCTGTTCTACTGGAGGATCAAGATGTAGCTGAGGCATTAGCTGAGTACATTTTCCGCCATGGCATTGAGAGTATTGTTGTTGGTGCTACATCCAGGACTGGTGGGTTAACTAGGTATGCAACACATGTAAGATTGTGCGTGTATGTGCGTTTTTTATTTGTCCAAACTCATACGATTTTCAAAACATGTTGTTCAAGTAGGCGTCTATTCAAGGCATCTGAATCTATTCCAGGCAGAGTCCTGAAGTTGGCACCGCGTTTCTGCTCAGTATACACCATCAAACAAGGAAGGGTGAGCGAAATGAGTGAAGCATCTCGTCCACTTCCAAATATTCATGTTGAGGAGAGGGCAGCGGATCACCAGTCCGATCACATAGGTAGAGGTCCGATCTACAGAGCATATGATGAGGTCTCAGTGGCTGAGAATGATGTTTCGTTTCAAAGCTCAGAAAGACCAAGTACTGACAGCATTTTATCCTTCTATCAAAGTTTTGGTCCAGCTGGACTGACCCGATTTCCTTTAGAATCATCATCAAACATGGAGAGTATTGCAAAACTGGACGAAGATTTTGACAGTTTTGATTTTTACACTCCACATGAACCGTCATCAACCGTACAACGTTGTGGAGGAACACCACTCTTGTCGCAGAAAGTATTGGATGACATGGAAGAGGAGATGAAAAGGCTTAGAGTGGAGCTGAAGCAAACAATGGACATGTACCACGCAGCCTGCAAAGAAGCAGTGGCAGAAAAACAGAAGACAATTGAGCTACAAGAGTGGAAATTGACAGAAGGGAAAAAACTAGAAGAGGCACGACATGCCTTAGAAGCAACTAGGGCAGCTATGGAGAAGGAAAAAGCACATCCTAAAGCAGCAATTTTGGCAGCTGATCATCGTCACGAAGCAGCACATAGGTTTGCTGAGAAAGAAGTGCAAACAACAATCAGTGCAGATCAAATATTCAAAGCATTAAGGGAGGCTGACAATGAAGAGAAGAAACGAGTTTTGGATGCTTTAGGCCAGTCCCAATTAGTTTTCAAATACCAAAGCTTAGTTCATATCTTAGTTGTTTTATTGTTATTTTCTTTTTACTGTTCACTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

470

Amino Acids

52.72

Weight (kDa)

6.19

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 18 - 135 7.8e-10 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20310
malus_domestica MD13G1232700.v1.1 MD13G1233300.v1.1 MD16G1238300.v1.1
prunus_persica Prupe.1G064200_v2.0.a1
pyrus_communis pycom13g20550
rosa_chinensis RchiOBHm_Chr4g0397631
rosa_laevigata RLG00000009422
rosa_multiflora Rmu_co8218642.1_g000001 Rmu_sc0002729.1_g000005
rosa_roxburghii Rroxscaffold_5G00342440
rosa_rugosa Rorug03G0342200
rosa_samantha Rh4AG079500 Rh4BG077500 Rh4CG085400 Rh4DG072500
rosa_wichuraiana Rw4G006510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 553
AccI GTMKAC 1 cut(s) 573
AccII CGCG 3 cut(s) 44, 283, 559
AciI CCGC 4 cut(s) 44, 358, 557, 656
AclI AACGTT 1 cut(s) 922
AclWI GGATC 2 cut(s) 327, 666
AcuI CTGAAG 2 cut(s) 566, 1022
AcyI GRCGYC 2 cut(s) 75, 505
AfaI GTAC 6 cut(s) 280, 294, 350, 763, 918, 1022
AfiI CCNNNNNNNGG 1 cut(s) 550
AflIII ACRYGT 3 cut(s) 427, 488, 1017
AgsI TTSAA 7 cut(s) 97, 484, 498, 514, 743, 1267, 1342
AjnI CCWGG 2 cut(s) 395, 532
AjuI GAANNNNNNNTTGG 4 cut(s) 1292, 1324, 1341, 1373
Alw26I GTCTC 3 cut(s) 82, 124, 718
AlwI GGATC 2 cut(s) 327, 666
AlwNI CAGNNNCTG 1 cut(s) 722
AoxI GGCC 1 cut(s) 1321
ApeKI GCWGC 6 cut(s) 653, 1028, 1142, 1175, 1187, 1208
ArsI GACNNNNNNTTYG 4 cut(s) 781, 813, 854, 886
Asp700I GAANNNNTTC 1 cut(s) 528
AspLEI GCGC 2 cut(s) 44, 285
AspS9I GGNCC 2 cut(s) 686, 797
AsuHPI GGTGA 3 cut(s) 158, 607, 653
AvaII GGWCC 2 cut(s) 686, 797
BanI GGYRCC 1 cut(s) 553
BbsI GAAGAC 1 cut(s) 1067
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 6 cut(s) 665, 1040, 1154, 1187, 1199, 1220
BccI CCATC 3 cut(s) 178, 220, 587
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 279, 313
BciT130I CCWGG 2 cut(s) 397, 534
BclI TGATCA 1 cut(s) 1192
BcoDI GTCTC 3 cut(s) 82, 124, 718
BfaI CTAG 3 cut(s) 414, 1106, 1137
BfmI CTRYAG 1 cut(s) 694
BisI GCNGC 6 cut(s) 654, 1029, 1143, 1176, 1188, 1209
BlsI GCNGC 6 cut(s) 655, 1030, 1144, 1177, 1189, 1210
BmcAI AGTACT 1 cut(s) 763
Bme1390I CCNGG 2 cut(s) 397, 534
Bme18I GGWCC 2 cut(s) 686, 797
BmgT120I GGNCC 2 cut(s) 686, 797
BmiI GGNNCC 1 cut(s) 555
BmrFI CCNGG 2 cut(s) 397, 534
BmsI GCATC 4 cut(s) 226, 527, 623, 1303
BpiI GAAGAC 1 cut(s) 1067
BpmI CTGGAG 2 cut(s) 64, 335
Bpu10I CCTNAGC 1 cut(s) 333
Bsa29I ATCGAT 1 cut(s) 108
BsaHI GRCGYC 2 cut(s) 75, 505
BsaI GGTCTC 1 cut(s) 718
BsaJI CCNNGG 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 1 cut(s) 550
Bse1I ACTGG 5 cut(s) 318, 406, 664, 864, 1324
BseBI CCWGG 2 cut(s) 397, 534
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 5 cut(s) 170, 392, 967, 1165, 1318
BseLI CCNNNNNNNGG 1 cut(s) 550
BseMII CTCAG 7 cut(s) 324, 336, 582, 714, 729, 762, 1215
BseNI ACTGG 5 cut(s) 318, 406, 664, 864, 1324
BseRI GAGGAG 2 cut(s) 659, 989
BseXI GCAGC 6 cut(s) 665, 1040, 1154, 1187, 1199, 1220
BsgI GTGCAG 1 cut(s) 1272
Bsh1236I CGCG 3 cut(s) 44, 283, 559
BshFI GGCC 1 cut(s) 1323
BshNI GGYRCC 1 cut(s) 553
BshVI ATCGAT 1 cut(s) 108
BslFI GGGAC 1 cut(s) 1312
BslI CCNNNNNNNGG 1 cut(s) 550
BsmAI GTCTC 3 cut(s) 82, 124, 718
BsmBI CGTCTC 2 cut(s) 82, 124
BsmFI GGGAC 1 cut(s) 1312
BsnI GGCC 1 cut(s) 1323
Bso31I GGTCTC 1 cut(s) 718
Bsp143I GATC 8 cut(s) 109, 125, 319, 658, 670, 690, 1192, 1255
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 4 cut(s) 44, 358, 557, 656
BspANI GGCC 1 cut(s) 1323
BspCNI CTCAG 7 cut(s) 325, 337, 581, 715, 728, 761, 1216
BspDI ATCGAT 1 cut(s) 108
BspFNI CGCG 3 cut(s) 44, 283, 559
BspLI GGNNCC 1 cut(s) 555
BspPI GGATC 2 cut(s) 327, 666
BspT107I GGYRCC 1 cut(s) 553
BspTNI GGTCTC 1 cut(s) 718
BsrI ACTGG 5 cut(s) 318, 406, 664, 864, 1324
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 8 cut(s) 109, 125, 319, 658, 670, 690, 1192, 1255
BssNAI GTATAC 1 cut(s) 574
BssNI GRCGYC 2 cut(s) 75, 505
BssT1I CCWWGG 1 cut(s) 361
Bst1107I GTATAC 1 cut(s) 574
Bst2UI CCWGG 2 cut(s) 397, 534
Bst4CI ACNGT 6 cut(s) 278, 878, 906, 916, 1397, 1404
Bst6I CTCTTC 3 cut(s) 966, 1104, 1287
BstACI GRCGYC 2 cut(s) 75, 505
BstAPI GCANNNNNTGC 1 cut(s) 1121
BstC8I GCNNGC 2 cut(s) 228, 1033
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 5 cut(s) 170, 392, 967, 1165, 1318
BstFNI CGCG 3 cut(s) 44, 283, 559
BstHHI GCGC 2 cut(s) 44, 285
BstKTI GATC 8 cut(s) 112, 128, 322, 661, 673, 693, 1195, 1258
BstMAI GTCTC 3 cut(s) 82, 124, 718
BstMBI GATC 8 cut(s) 109, 125, 319, 658, 670, 690, 1192, 1255
BstMWI GCNNNNNNNGC 6 cut(s) 81, 236, 1121, 1130, 1139, 1184
BstNI CCWGG 2 cut(s) 397, 534
BstNSI RCATGY 4 cut(s) 431, 492, 1021, 1124
BstSCI CCNGG 2 cut(s) 395, 532
BstSFI CTRYAG 1 cut(s) 694
BstUI CGCG 3 cut(s) 44, 283, 559
BstV1I GCAGC 6 cut(s) 665, 1040, 1154, 1187, 1199, 1220
BstV2I GAAGAC 1 cut(s) 1067
BstZ17I GTATAC 1 cut(s) 574
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 1 cut(s) 1323
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 5 cut(s) 170, 392, 967, 1165, 1318
BtsI GCAGTG 2 cut(s) 63, 1050
BtsIMutI CAGTG 5 cut(s) 63, 723, 1050, 1255, 1400
Cac8I GCNNGC 2 cut(s) 228, 1033
CaiI CAGNNNCTG 1 cut(s) 722
CfoI GCGC 2 cut(s) 44, 285
Cfr13I GGNCC 2 cut(s) 686, 797
ClaI ATCGAT 1 cut(s) 108
CseI GACGC 2 cut(s) 64, 494
Csp6I GTAC 6 cut(s) 279, 293, 349, 762, 917, 1021
CviQI GTAC 6 cut(s) 279, 293, 349, 762, 917, 1021
DpnI GATC 8 cut(s) 111, 127, 321, 660, 672, 692, 1194, 1257
DpnII GATC 8 cut(s) 109, 125, 319, 658, 670, 690, 1192, 1255
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eam1104I CTCTTC 3 cut(s) 966, 1104, 1287
EarI CTCTTC 3 cut(s) 966, 1104, 1287
EciI GGCGGA 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 361
Eco31I GGTCTC 1 cut(s) 718
Eco47I GGWCC 2 cut(s) 686, 797
Eco57I CTGAAG 2 cut(s) 566, 1022
EcoRII CCWGG 2 cut(s) 395, 532
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
Esp3I CGTCTC 2 cut(s) 82, 124
FaqI GGGAC 1 cut(s) 1312
FauI CCCGC 1 cut(s) 37
FauNDI CATATG 1 cut(s) 703
FbaI TGATCA 1 cut(s) 1192
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 6 cut(s) 654, 1029, 1143, 1176, 1188, 1209
FokI GGATG 5 cut(s) 157, 379, 974, 1152, 1325
Fsp4HI GCNGC 6 cut(s) 654, 1029, 1143, 1176, 1188, 1209
FspBI CTAG 3 cut(s) 414, 1106, 1137
GlaI GCGC 2 cut(s) 43, 284
GluI GCNGC 6 cut(s) 654, 1029, 1143, 1176, 1188, 1209
GsuI CTGGAG 2 cut(s) 64, 335
HaeIII GGCC 1 cut(s) 1323
HgaI GACGC 2 cut(s) 64, 494
HhaI GCGC 2 cut(s) 44, 285
Hin1I GRCGYC 2 cut(s) 75, 505
Hin6I GCGC 2 cut(s) 42, 283
HinP1I GCGC 2 cut(s) 42, 283
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HindIII AAGCTT 2 cut(s) 149, 1351
HinfI GANTC 3 cut(s) 524, 540, 827
HpaI GTTAAC 1 cut(s) 411
HphI GGTGA 3 cut(s) 158, 607, 653
Hpy166II GTNNAC 4 cut(s) 411, 574, 623, 1400
Hpy188I TCNGA 4 cut(s) 523, 670, 690, 751
Hpy188III TCNNGA 5 cut(s) 123, 233, 323, 544, 1202
Hpy8I GTNNAC 4 cut(s) 411, 574, 623, 1400
Hpy99I CGWCG 2 cut(s) 71, 74
HpyAV CCTTC 5 cut(s) 215, 585, 790, 1088, 1147
HpyCH4III ACNGT 6 cut(s) 278, 878, 906, 916, 1397, 1404
HpyCH4IV ACGT 1 cut(s) 922
HpyCH4V TGCA 6 cut(s) 197, 422, 854, 1035, 1237, 1253
HpyF10VI GCNNNNNNNGC 6 cut(s) 81, 236, 1121, 1130, 1139, 1184
HpySE526I ACGT 1 cut(s) 922
Hsp92I GRCGYC 2 cut(s) 75, 505
HspAI GCGC 2 cut(s) 42, 283
Ksp22I TGATCA 1 cut(s) 1192
KspAI GTTAAC 1 cut(s) 411
Kzo9I GATC 8 cut(s) 109, 125, 319, 658, 670, 690, 1192, 1255
LmnI GCTCC 3 cut(s) 145, 244, 997
Lsp1109I GCAGC 6 cut(s) 665, 1040, 1154, 1187, 1199, 1220
LweI GCATC 4 cut(s) 226, 527, 623, 1303
MaeI CTAG 3 cut(s) 414, 1106, 1137
MaeII ACGT 1 cut(s) 922
MaeIII GTNAC 1 cut(s) 1199
MalI GATC 8 cut(s) 111, 127, 321, 660, 672, 692, 1194, 1257
MboI GATC 8 cut(s) 109, 125, 319, 658, 670, 690, 1192, 1255
MboII GAAGA 6 cut(s) 878, 983, 1072, 1121, 1304, 1309
MfeI CAATTG 1 cut(s) 1065
MluCI AATT 5 cut(s) 175, 1065, 1085, 1179, 1331
MlyI GAGTC 1 cut(s) 549
MroXI GAANNNNTTC 1 cut(s) 528
MseI TTAA 2 cut(s) 410, 1274
MspA1I CMGCKG 3 cut(s) 656, 803, 1190
MspR9I CCNGG 2 cut(s) 397, 534
MunI CAATTG 1 cut(s) 1065
MvaI CCWGG 2 cut(s) 397, 534
MvnI CGCG 3 cut(s) 44, 283, 559
MwoI GCNNNNNNNGC 6 cut(s) 81, 236, 1121, 1130, 1139, 1184
NcoI CCATGG 1 cut(s) 361
NdeI CATATG 1 cut(s) 703
NdeII GATC 8 cut(s) 109, 125, 319, 658, 670, 690, 1192, 1255
NlaIV GGNNCC 1 cut(s) 555
NmuCI GTSAC 1 cut(s) 1199
NspI RCATGY 4 cut(s) 431, 492, 1021, 1124
PciI ACATGT 3 cut(s) 427, 488, 1017
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 114
PdmI GAANNNNTTC 1 cut(s) 528
PfeI GAWTC 2 cut(s) 524, 827
PflFI GACNNNGTC 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 395
PkrI GCNGC 6 cut(s) 655, 1030, 1144, 1177, 1189, 1210
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
PscI ACATGT 3 cut(s) 427, 488, 1017
Psp1406I AACGTT 1 cut(s) 922
Psp6I CCWGG 2 cut(s) 395, 532
PspGI CCWGG 2 cut(s) 395, 532
PspN4I GGNNCC 1 cut(s) 555
PspPI GGNCC 2 cut(s) 686, 797
PstNI CAGNNNCTG 1 cut(s) 722
PsyI GACNNNGTC 1 cut(s) 74
PvuII CAGCTG 2 cut(s) 803, 1190
RsaI GTAC 6 cut(s) 280, 294, 350, 763, 918, 1022
RsaNI GTAC 6 cut(s) 279, 293, 349, 762, 917, 1021
SaqAI TTAA 2 cut(s) 410, 1274
SatI GCNGC 6 cut(s) 654, 1029, 1143, 1176, 1188, 1209
Sau3AI GATC 8 cut(s) 109, 125, 319, 658, 670, 690, 1192, 1255
Sau96I GGNCC 2 cut(s) 686, 797
ScaI AGTACT 1 cut(s) 763
SchI GAGTC 1 cut(s) 549
ScrFI CCNGG 2 cut(s) 397, 534
SfaNI GCATC 4 cut(s) 226, 527, 623, 1303
SfcI CTRYAG 1 cut(s) 694
SinI GGWCC 2 cut(s) 686, 797
Sse9I AATT 5 cut(s) 175, 1065, 1085, 1179, 1331
SsiI CCGC 4 cut(s) 44, 358, 557, 656
SspI AATATT 2 cut(s) 634, 1263
SspMI CTAG 3 cut(s) 414, 1106, 1137
StyD4I CCNGG 2 cut(s) 395, 532
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 6 cut(s) 278, 878, 906, 916, 1397, 1404
TaiI ACGT 1 cut(s) 925
TaqI TCGA 3 cut(s) 66, 108, 124
TasI AATT 5 cut(s) 175, 1065, 1085, 1179, 1331
TatI WGTACW 3 cut(s) 292, 348, 761
TfiI GAWTC 2 cut(s) 524, 827
Tru1I TTAA 2 cut(s) 410, 1274
Tru9I TTAA 2 cut(s) 410, 1274
TscAI CASTG 5 cut(s) 63, 723, 1050, 1255, 1407
TseFI GTSAC 1 cut(s) 1199
TseI GCWGC 6 cut(s) 653, 1028, 1142, 1175, 1187, 1208
Tsp45I GTSAC 1 cut(s) 1199
TspDTI ATGAA 7 cut(s) 182, 234, 626, 915, 995, 1305, 1349
TspRI CASTG 5 cut(s) 63, 723, 1050, 1255, 1407
Tth111I GACNNNGTC 1 cut(s) 74
VpaK11BI GGWCC 2 cut(s) 686, 797
XceI RCATGY 4 cut(s) 431, 492, 1021, 1124
XmiI GTMKAC 1 cut(s) 573
XmnI GAANNNNTTC 1 cut(s) 528
XspI CTAG 3 cut(s) 414, 1106, 1137
ZrmI AGTACT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.