Prupe.1G064200_v2.0.a1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014277
Physical Location & Seq
Forward (+)
4575364 .. 4578285
2922 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G064200.1

Sequence Viewer

Length: 1332 bp
ATGAAGAAGAAGTTATCTCTGAATTCGAGAGTTGAGGAGGAGGAGGGATCAAGGAGAGAGAGAATGTCGAATATTGTTGATAATGGAAATCATCAAGGCGTAAGGACAATAGCAGTGGCCGTAGACGAGGGCATTGCCAGCCAAAATGCTTTGAAATGGGCTGTTAATCATCTTCTCTATGGATCTACCCGTCATACTCCTATCAAGCTTCTCCATGTTATTAATCCTTCTAATTCCAATAATACCCCCCATGCAACTGGGCAAGCTCATGAAGCTCCAAACATGGACTTCATGCTTCCATTTCGGTGCTATTGTACTCGCAAACGAGTACAATGTGAGACTGTTGTGCTGGAGGATCAAGATGTGGCCGAGGCATTACTTGACTACATCTCCCGCAATGGCATTGAGTTTATTGTTCTTGGTGCTACCGCTACATCCAGGATTGGGTTTTCTAGGCGTCTGTTCAAGGCATCTGAGTCTATTCCAGGCAGAGTCCTAAAGTTGGCACCACATTTCTGCTCTGTATACACCATCAAACAAGGTAGGGTATGCGAAGGGCGCGAAGCCTCTCGTCCTCTACCAAACATTCGAGCAGCTGATGAGAGGGCAGAAGAATCTAATCACGTAGGCAGAGCTCCAAGCAACAGAGCATATGATGAGGTCTCATTGCCTGACAATGACATCTCGTTTGGAAGACCAAGTACTGATAGCATATCTTTTTACCAAAATTTTGGGTCTGCTGATATGAGCCGAGTTCTTTCAGAATCCTCAAATTACTTGGAGAGTATTGCAAAACTAGAATCAGATTTCGGCAGTTTCGATTTGAACATTCCACATGAACTGTCATCAAATGCCCAAGGAATGCCATTCCTGTCACAGAAAGTATTGGATGAAATGGAAGATGAGATGAAAAGGCTTAGATTGGAGCAGAAGCAAACGATGGAAATGTACCATGCAGCCTGCAAAGAAGCAGTGGCAGCAAAACAGAAGGCTATTGAGCTGGAAGAGTGGAAAATGAAAGAAGGGCAAAGACTAGAAGATACACGACGTGCCCTAGAAGCAACTCTGGCAGCTATGGAGAAGGAAAGAGCCAACTCTAAGGCAACAATTTTGGCAGCTGATGGCGGAGCAGCTGAGCGGTTTGCTGAGAAAGAGTTGCAAAGGACCATAAATGCAGATCAGATCTTCAAAGCTCTAAGAGAGGCTAATGATGAAGAGAAGAAAAGGGTTTTGGATGCTTTAGGCCAGTCTCATATAGTTTTCAAATACCAAAGCTTAGTTCATATTTTAGTTGTTTTATTTTTATTTTCTTTGTACTATTCACTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

444

Amino Acids

49.89

Weight (kDa)

6.23

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20310
malus_domestica MD13G1232700.v1.1 MD13G1233300.v1.1 MD16G1238300.v1.1
prunus_persica Prupe.1G064200_v2.0.a1
pyrus_communis pycom13g20550
rosa_chinensis RchiOBHm_Chr4g0397631
rosa_laevigata RLG00000009422
rosa_multiflora Rmu_co8218642.1_g000001 Rmu_sc0002729.1_g000005
rosa_roxburghii Rroxscaffold_5G00342440
rosa_rugosa Rorug03G0342200
rosa_samantha Rh4AG079500 Rh4BG077500 Rh4CG085400 Rh4DG072500
rosa_wichuraiana Rw4G006510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 505
AccBSI CCGCTC 1 cut(s) 1138
AccI GTMKAC 2 cut(s) 123, 525
AccII CGCG 1 cut(s) 561
AciI CCGC 4 cut(s) 394, 429, 1125, 1138
AclWI GGATC 3 cut(s) 55, 190, 363
AcoI YGGCCR 2 cut(s) 117, 366
AcsI RAATTY 2 cut(s) 22, 727
AcyI GRCGYC 1 cut(s) 457
AdeI CACNNNGTG 1 cut(s) 1049
AfaI GTAC 5 cut(s) 316, 330, 703, 950, 1316
AfiI CCNNNNNNNGG 2 cut(s) 444, 502
AgsI TTSAA 5 cut(s) 154, 466, 826, 1189, 1264
AjiI CACGTC 1 cut(s) 1049
AjnI CCWGG 2 cut(s) 437, 484
AjuI GAANNNNNNNTTGG 4 cut(s) 1214, 1246, 1263, 1295
Alw21I GWGCWC 1 cut(s) 637
Alw26I GTCTC 3 cut(s) 332, 667, 1254
AlwI GGATC 3 cut(s) 55, 190, 363
AoxI GGCC 3 cut(s) 117, 366, 1243
ApeKI GCWGC 6 cut(s) 593, 956, 977, 1070, 1115, 1130
ApoI RAATTY 2 cut(s) 22, 727
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AseI ATTAAT 1 cut(s) 222
AspLEI GCGC 1 cut(s) 561
AspS9I GGNCC 1 cut(s) 1164
AvaII GGWCC 1 cut(s) 1164
BaeGI GKGCMC 1 cut(s) 1054
BanI GGYRCC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 637
BarI GAAGNNNNNNTAC 2 cut(s) 685, 717
BbsI GAAGAC 1 cut(s) 700
Bbv12I GWGCWC 1 cut(s) 637
BbvI GCAGC 6 cut(s) 605, 968, 989, 1082, 1127, 1142
BccI CCATC 3 cut(s) 539, 934, 1115
BceAI ACGGC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BciT130I CCWGG 2 cut(s) 439, 486
BcoDI GTCTC 3 cut(s) 332, 667, 1254
BfaI CTAG 4 cut(s) 453, 797, 1034, 1055
BglII AGATCT 1 cut(s) 1182
BisI GCNGC 6 cut(s) 594, 957, 978, 1071, 1116, 1131
BlpI GCTNAGC 1 cut(s) 1134
BlsI GCNGC 6 cut(s) 595, 958, 979, 1072, 1117, 1132
BmcAI AGTACT 1 cut(s) 703
Bme1390I CCNGG 2 cut(s) 439, 486
Bme18I GGWCC 1 cut(s) 1164
BmgBI CACGTC 1 cut(s) 1049
BmgT120I GGNCC 1 cut(s) 1164
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 2 cut(s) 439, 486
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 479, 1225
BmuI ACTGGG 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 700
BpmI CTGGAG 1 cut(s) 371
Bpu1102I GCTNAGC 1 cut(s) 1134
BsaAI YACGTR 1 cut(s) 625
BsaHI GRCGYC 1 cut(s) 457
BsaI GGTCTC 1 cut(s) 667
BsaJI CCNNGG 2 cut(s) 369, 856
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 444, 502
Bse1I ACTGG 2 cut(s) 262, 1246
Bse3DI GCAATG 3 cut(s) 132, 403, 665
BseBI CCWGG 2 cut(s) 439, 486
BseDI CCNNGG 2 cut(s) 369, 856
BseGI GGATG 3 cut(s) 434, 895, 1240
BseLI CCNNNNNNNGG 2 cut(s) 444, 502
BseMI GCAATG 3 cut(s) 132, 403, 665
BseMII CTCAG 3 cut(s) 465, 1125, 1137
BseNI ACTGG 2 cut(s) 262, 1246
BseRI GAGGAG 3 cut(s) 50, 53, 56
BseSI GKGCMC 1 cut(s) 1054
BseXI GCAGC 6 cut(s) 605, 968, 989, 1082, 1127, 1142
Bsh1236I CGCG 1 cut(s) 561
BshFI GGCC 3 cut(s) 119, 368, 1245
BshNI GGYRCC 1 cut(s) 505
BsiHKAI GWGCWC 1 cut(s) 637
BslI CCNNNNNNNGG 2 cut(s) 444, 502
BsmAI GTCTC 3 cut(s) 332, 667, 1254
BsmI GAATGC 1 cut(s) 867
BsnI GGCC 3 cut(s) 119, 368, 1245
Bso31I GGTCTC 1 cut(s) 667
Bsp1286I GDGCHC 2 cut(s) 637, 1054
Bsp143I GATC 5 cut(s) 47, 182, 355, 1177, 1182
Bsp1720I GCTNAGC 1 cut(s) 1134
BspACI CCGC 4 cut(s) 394, 429, 1125, 1138
BspANI GGCC 3 cut(s) 119, 368, 1245
BspCNI CTCAG 3 cut(s) 466, 1126, 1138
BspFNI CGCG 1 cut(s) 561
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 507
BspPI GGATC 3 cut(s) 55, 190, 363
BspT107I GGYRCC 1 cut(s) 505
BspTNI GGTCTC 1 cut(s) 667
BsrBI CCGCTC 1 cut(s) 1138
BsrDI GCAATG 3 cut(s) 132, 403, 665
BsrI ACTGG 2 cut(s) 262, 1246
BssECI CCNNGG 2 cut(s) 369, 856
BssMI GATC 5 cut(s) 47, 182, 355, 1177, 1182
BssNAI GTATAC 1 cut(s) 526
BssNI GRCGYC 1 cut(s) 457
BssT1I CCWWGG 1 cut(s) 856
Bst1107I GTATAC 1 cut(s) 526
Bst2UI CCWGG 2 cut(s) 439, 486
Bst4CI ACNGT 2 cut(s) 343, 843
Bst6I CTCTTC 2 cut(s) 999, 1209
BstACI GRCGYC 1 cut(s) 457
BstBAI YACGTR 1 cut(s) 625
BstC8I GCNNGC 3 cut(s) 139, 264, 961
BstDEI CTNAG 7 cut(s) 474, 917, 1098, 1134, 1146, 1196, 1276
BstF5I GGATG 3 cut(s) 434, 895, 1240
BstFNI CGCG 1 cut(s) 561
BstHHI GCGC 1 cut(s) 561
BstKTI GATC 5 cut(s) 50, 185, 358, 1180, 1185
BstMAI GTCTC 3 cut(s) 332, 667, 1254
BstMBI GATC 5 cut(s) 47, 182, 355, 1177, 1182
BstMWI GCNNNNNNNGC 6 cut(s) 138, 272, 558, 977, 1058, 1067
BstNI CCWGG 2 cut(s) 439, 486
BstSCI CCNGG 2 cut(s) 437, 484
BstSLI GKGCMC 1 cut(s) 1054
BstUI CGCG 1 cut(s) 561
BstV1I GCAGC 6 cut(s) 605, 968, 989, 1082, 1127, 1142
BstV2I GAAGAC 1 cut(s) 700
BstX2I RGATCY 2 cut(s) 182, 1182
BstXI CCANNNNNNTGG 2 cut(s) 257, 731
BstYI RGATCY 2 cut(s) 182, 1182
BstZ17I GTATAC 1 cut(s) 526
BsuRI GGCC 3 cut(s) 119, 368, 1245
BtrI CACGTC 1 cut(s) 1049
BtsCI GGATG 3 cut(s) 434, 895, 1240
BtsI GCAGTG 2 cut(s) 120, 978
BtsIMutI CAGTG 2 cut(s) 120, 978
Cac8I GCNNGC 3 cut(s) 139, 264, 961
CciI TCATGA 1 cut(s) 268
CfoI GCGC 1 cut(s) 561
Cfr13I GGNCC 1 cut(s) 1164
CseI GACGC 1 cut(s) 446
Csp6I GTAC 5 cut(s) 315, 329, 702, 949, 1315
CspCI CAANNNNNGTGG 2 cut(s) 96, 131
CviAII CATG 7 cut(s) 215, 251, 269, 283, 292, 836, 953
CviQI GTAC 5 cut(s) 315, 329, 702, 949, 1315
DdeI CTNAG 7 cut(s) 474, 917, 1098, 1134, 1146, 1196, 1276
DpnI GATC 5 cut(s) 49, 184, 357, 1179, 1184
DpnII GATC 5 cut(s) 47, 182, 355, 1177, 1182
DraIII CACNNNGTG 1 cut(s) 1049
EaeI YGGCCR 2 cut(s) 117, 366
Eam1104I CTCTTC 2 cut(s) 999, 1209
EarI CTCTTC 2 cut(s) 999, 1209
EciI GGCGGA 1 cut(s) 1140
Ecl136II GAGCTC 1 cut(s) 635
Eco130I CCWWGG 1 cut(s) 856
Eco24I GRGCYC 1 cut(s) 637
Eco31I GGTCTC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 1164
Eco53kI GAGCTC 1 cut(s) 635
EcoICRI GAGCTC 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 437, 484
EcoT14I CCWWGG 1 cut(s) 856
EcoT38I GRGCYC 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 856
FaeI CATG 7 cut(s) 218, 254, 272, 286, 295, 839, 956
FatI CATG 7 cut(s) 214, 250, 268, 282, 291, 835, 952
FauI CCCGC 1 cut(s) 401
FauNDI CATATG 1 cut(s) 652
FblI GTMKAC 2 cut(s) 123, 525
Fnu4HI GCNGC 6 cut(s) 594, 957, 978, 1071, 1116, 1131
FokI GGATG 3 cut(s) 421, 902, 1247
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 6 cut(s) 594, 957, 978, 1071, 1116, 1131
FspBI CTAG 4 cut(s) 453, 797, 1034, 1055
GlaI GCGC 1 cut(s) 560
GluI GCNGC 6 cut(s) 594, 957, 978, 1071, 1116, 1131
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 3 cut(s) 119, 368, 1245
HgaI GACGC 1 cut(s) 446
HhaI GCGC 1 cut(s) 561
Hin1I GRCGYC 1 cut(s) 457
Hin1II CATG 7 cut(s) 218, 254, 272, 286, 295, 839, 956
Hin6I GCGC 1 cut(s) 559
HinP1I GCGC 1 cut(s) 559
HindIII AAGCTT 2 cut(s) 206, 1273
HinfI GANTC 5 cut(s) 476, 492, 614, 764, 800
Hpy166II GTNNAC 2 cut(s) 124, 526
Hpy188I TCNGA 5 cut(s) 21, 475, 763, 805, 1182
Hpy188III TCNNGA 3 cut(s) 27, 269, 359
Hpy8I GTNNAC 2 cut(s) 124, 526
Hpy99I CGWCG 1 cut(s) 1050
HpyAV CCTTC 5 cut(s) 237, 548, 982, 1016, 1075
HpyCH4III ACNGT 2 cut(s) 343, 843
HpyCH4IV ACGT 2 cut(s) 624, 1048
HpyCH4V TGCA 6 cut(s) 254, 791, 956, 963, 1159, 1175
HpyF10VI GCNNNNNNNGC 6 cut(s) 138, 272, 558, 977, 1058, 1067
HpyF3I CTNAG 7 cut(s) 474, 917, 1098, 1134, 1146, 1196, 1276
HpySE526I ACGT 2 cut(s) 624, 1048
Hsp92I GRCGYC 1 cut(s) 457
Hsp92II CATG 7 cut(s) 218, 254, 272, 286, 295, 839, 956
HspAI GCGC 1 cut(s) 559
Kzo9I GATC 5 cut(s) 47, 182, 355, 1177, 1182
LmnI GCTCC 4 cut(s) 280, 640, 925, 1127
Lsp1109I GCAGC 6 cut(s) 605, 968, 989, 1082, 1127, 1142
LweI GCATC 2 cut(s) 479, 1225
MaeI CTAG 4 cut(s) 453, 797, 1034, 1055
MaeII ACGT 2 cut(s) 624, 1048
MaeIII GTNAC 1 cut(s) 873
MalI GATC 5 cut(s) 49, 184, 357, 1179, 1184
MbiI CCGCTC 1 cut(s) 1138
MboI GATC 5 cut(s) 47, 182, 355, 1177, 1182
MflI RGATCY 2 cut(s) 182, 1182
MhlI GDGCHC 2 cut(s) 637, 1054
MluCI AATT 5 cut(s) 22, 232, 727, 772, 1107
MlyI GAGTC 2 cut(s) 485, 501
MseI TTAA 2 cut(s) 165, 222
MslI CAYNNNNRTG 1 cut(s) 304
MspA1I CMGCKG 3 cut(s) 596, 1118, 1133
MspR9I CCNGG 2 cut(s) 439, 486
Mva1269I GAATGC 1 cut(s) 867
MvaI CCWGG 2 cut(s) 439, 486
MvnI CGCG 1 cut(s) 561
MwoI GCNNNNNNNGC 6 cut(s) 138, 272, 558, 977, 1058, 1067
NdeI CATATG 1 cut(s) 652
NdeII GATC 5 cut(s) 47, 182, 355, 1177, 1182
NlaIII CATG 7 cut(s) 218, 254, 272, 286, 295, 839, 956
NlaIV GGNNCC 1 cut(s) 507
NmeAIII GCCGAG 2 cut(s) 394, 776
NmuCI GTSAC 1 cut(s) 873
PagI TCATGA 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 816
PctI GAATGC 1 cut(s) 867
PfeI GAWTC 3 cut(s) 614, 764, 800
PfoI TCCNGGA 1 cut(s) 437
PkrI GCNGC 6 cut(s) 595, 958, 979, 1072, 1117, 1132
PleI GAGTC 2 cut(s) 484, 500
PpsI GAGTC 2 cut(s) 484, 500
Ppu21I YACGTR 1 cut(s) 625
PshBI ATTAAT 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 637
Psp6I CCWGG 2 cut(s) 437, 484
PspGI CCWGG 2 cut(s) 437, 484
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 1 cut(s) 1164
PsuI RGATCY 2 cut(s) 182, 1182
PvuII CAGCTG 3 cut(s) 596, 1118, 1133
RsaI GTAC 5 cut(s) 316, 330, 703, 950, 1316
RsaNI GTAC 5 cut(s) 315, 329, 702, 949, 1315
RseI CAYNNNNRTG 1 cut(s) 304
SacI GAGCTC 1 cut(s) 637
SaqAI TTAA 2 cut(s) 165, 222
SatI GCNGC 6 cut(s) 594, 957, 978, 1071, 1116, 1131
Sau3AI GATC 5 cut(s) 47, 182, 355, 1177, 1182
Sau96I GGNCC 1 cut(s) 1164
ScaI AGTACT 1 cut(s) 703
SchI GAGTC 2 cut(s) 485, 501
ScrFI CCNGG 2 cut(s) 439, 486
SduI GDGCHC 2 cut(s) 637, 1054
SfaNI GCATC 2 cut(s) 479, 1225
SinI GGWCC 1 cut(s) 1164
SmiMI CAYNNNNRTG 1 cut(s) 304
Sse9I AATT 5 cut(s) 22, 232, 727, 772, 1107
SsiI CCGC 4 cut(s) 394, 429, 1125, 1138
SspI AATATT 1 cut(s) 73
SspMI CTAG 4 cut(s) 453, 797, 1034, 1055
SstI GAGCTC 1 cut(s) 637
StyD4I CCNGG 2 cut(s) 437, 484
StyI CCWWGG 1 cut(s) 856
TaaI ACNGT 2 cut(s) 343, 843
TaiI ACGT 2 cut(s) 627, 1051
TaqI TCGA 4 cut(s) 26, 68, 589, 819
TasI AATT 5 cut(s) 22, 232, 727, 772, 1107
TatI WGTACW 4 cut(s) 314, 328, 701, 1314
TfiI GAWTC 3 cut(s) 614, 764, 800
Tru1I TTAA 2 cut(s) 165, 222
Tru9I TTAA 2 cut(s) 165, 222
TscAI CASTG 2 cut(s) 120, 978
TseFI GTSAC 1 cut(s) 873
TseI GCWGC 6 cut(s) 593, 956, 977, 1070, 1115, 1130
Tsp45I GTSAC 1 cut(s) 873
TspDTI ATGAA 9 cut(s) 17, 280, 285, 852, 906, 923, 1031, 1227, 1271
TspRI CASTG 2 cut(s) 120, 978
VpaK11BI GGWCC 1 cut(s) 1164
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 2 cut(s) 22, 727
XmiI GTMKAC 2 cut(s) 123, 525
XspI CTAG 4 cut(s) 453, 797, 1034, 1055
ZrmI AGTACT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.