Rh4BG077500

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014277
Physical Location & Seq
Forward (+)
13703813 .. 13706298
2486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG077500.1

Sequence Viewer

Length: 1284 bp
ATGTGGAATTCGAATAGCAGCAATAGTGGAAAAAGAAGACAATACAATGGGGGGCCAATAGCAGTAGGAGTATCAGGAGACAAAGCCAGTCAAAATGCTTTGAGATGGGCCATTGATAATCTTGTCACTCCTCCAAGCGACGATGTTGTTGTCAAGCTTATCCATGTCGCTCAAGGATCACCATGTCCCATTGTCTCCCCTGGGAACAGTGGATTGATTAATGAAGGGCAAGCTTTTGATCCTATTGAGGAAATTTTACTTCCCTTTCGTTGCTATTGTACACGCAAACGAGTACCATTTGAGATTGTTATACTCAAGGATCATGATGTAGCCAAGGCACTGATCGATTACATTTCCCGCCGTGGCATCGGGAATTTAATTCTTGGTGCTTCATCCAGGAATGGGTTTTCTAAGAGACTATTCAAGACATCAGATATTCCAAGTAGTGTGCAAAAGTTGGCACCGGATTTCTGCAATGTATTTACTATCAGCAAAGGAAAGATATGTGCAGTGCGTGCAGCCTGCCGCCGAGTGCCTGCCCTGCCGGCCCTCCCGGTAGAATCTAATTACATAGGCAGATCCGCAAGCAGCAAATCATATGACGAGGTCTCAGTGCAAGAGCCTGACATGGACACTGGCCTCTCTTTTGTAGGCTCAGAAAGACGAAGTACTGATAGCATGTTGTATTCTTTCTACGAAAACTTTGGGCAAGCTGAATTGACCCAAATTTCTTCTATGTCCTTGAACGTGGACATCACTGAATCAGCATCAGAATCAGATTTTGGGAGTTTCGATGGCCTTAACACTTTGCATGAAATGCCATCAGCGGCGCAGCACAATGGCTCAGGAAATCCATTCTTGTCGCAGAAAGTACTGGAAGAGATGGAAGAAGAGATGAAAAGTCTTAGAATGGAGCTGAAGCAAACGATAGAGATGTACCATGCAGCCTATAAAGAAGCACTGACAGCAAAGCAGAAGGCTGCCGAGCTCCAAGAGGGGAAAATGAAAGAAGAACAGGGACTAGAGGAAGCACTACTCACCTTAGAAGCAACTACAGCAGCTTTGAAGAATGAAAAAGAAAAGTCTAAGGCAGCAATGTTGGCAGCAGAAGCAGCTCAGAGGCTTGTTGAAGAAGAGGTGCAAAAGAGAGTGAATGCTGACAAGATGGAGGAGAACAAGGTTTTGGATACTTTTGGCCAGTTCTTTTTAGCTCTCAAATACCAAAGCTTATTTCATATCGTAGTTGCTTTGATTTTATTCTATGTGTACTTCTCAATCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

427

Amino Acids

47.19

Weight (kDa)

5.51

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 19 - 141 4.1e-06 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20310
malus_domestica MD13G1232700.v1.1 MD13G1233300.v1.1 MD16G1238300.v1.1
prunus_persica Prupe.1G064200_v2.0.a1
pyrus_communis pycom13g20550
rosa_chinensis RchiOBHm_Chr4g0397631
rosa_laevigata RLG00000009422
rosa_multiflora Rmu_co8218642.1_g000001 Rmu_sc0002729.1_g000005
rosa_roxburghii Rroxscaffold_5G00342440
rosa_rugosa Rorug03G0342200
rosa_samantha Rh4AG079500 Rh4BG077500 Rh4CG085400 Rh4DG072500
rosa_wichuraiana Rw4G006510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 460
AciI CCGC 4 cut(s) 358, 526, 582, 827
AclWI GGATC 4 cut(s) 184, 233, 327, 573
AcoI YGGCCR 1 cut(s) 1195
AcsI RAATTY 4 cut(s) 7, 252, 373, 726
AcuI CTGAAG 1 cut(s) 938
AfaI GTAC 6 cut(s) 280, 294, 670, 873, 938, 1268
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 4 cut(s) 424, 745, 1066, 1130
AjnI CCWGG 2 cut(s) 199, 395
AjuI GAANNNNNNNTTGG 6 cut(s) 765, 797, 1166, 1198, 1215, 1247
AluBI AGCT 9 cut(s) 157, 233, 713, 916, 988, 1061, 1115, 1211, 1227
AluI AGCT 9 cut(s) 157, 233, 713, 916, 988, 1061, 1115, 1211, 1227
Alw21I GWGCWC 1 cut(s) 990
Alw26I GTCTC 4 cut(s) 72, 199, 409, 613
AlwI GGATC 4 cut(s) 184, 233, 327, 573
AoxI GGCC 6 cut(s) 53, 108, 546, 637, 796, 1195
ApoI RAATTY 4 cut(s) 7, 252, 373, 726
AseI ATTAAT 1 cut(s) 219
AspLEI GCGC 1 cut(s) 832
AspS9I GGNCC 3 cut(s) 53, 108, 547
AsuC2I CCSGG 1 cut(s) 554
AsuHPI GGTGA 2 cut(s) 171, 1030
AsuII TTCGAA 1 cut(s) 11
BalI TGGCCA 1 cut(s) 1197
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 990
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 990
BccI CCATC 5 cut(s) 99, 788, 829, 877, 1159
BceAI ACGGC 1 cut(s) 345
BciT130I CCWGG 2 cut(s) 201, 397
BciVI GTATCC 1 cut(s) 1180
BcnI CCSGG 1 cut(s) 554
BcoDI GTCTC 4 cut(s) 72, 199, 409, 613
BfaI CTAG 1 cut(s) 1022
BfmI CTRYAG 1 cut(s) 1053
BfuI GTATCC 1 cut(s) 1180
BglI GCCNNNNNGGC 1 cut(s) 545
BmcAI AGTACT 2 cut(s) 670, 873
Bme1390I CCNGG 3 cut(s) 201, 397, 554
BmgT120I GGNCC 3 cut(s) 53, 108, 547
BmiI GGNNCC 2 cut(s) 54, 462
BmrFI CCNGG 3 cut(s) 201, 397, 554
BmsI GCATC 2 cut(s) 375, 776
BpiI GAAGAC 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 844
Bpu14I TTCGAA 1 cut(s) 11
BpuEI CTTGAG 2 cut(s) 156, 299
BpuMI CCSGG 1 cut(s) 554
Bsa29I ATCGAT 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 613
BsaJI CCNNGG 4 cut(s) 199, 200, 333, 361
BsaWI WCCGGW 1 cut(s) 463
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse118I RCCGGY 1 cut(s) 544
Bse1I ACTGG 4 cut(s) 87, 640, 879, 1198
Bse3DI GCAATG 2 cut(s) 481, 1101
BseBI CCWGG 2 cut(s) 201, 397
BseCI ATCGAT 1 cut(s) 345
BseDI CCNNGG 4 cut(s) 199, 200, 333, 361
BseGI GGATG 1 cut(s) 392
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMI GCAATG 2 cut(s) 481, 1101
BseMII CTCAG 4 cut(s) 624, 669, 858, 1130
BseNI ACTGG 4 cut(s) 87, 640, 879, 1198
BseRI GAGGAG 2 cut(s) 120, 1184
BsgI GTGCAG 2 cut(s) 528, 537
BshFI GGCC 6 cut(s) 55, 110, 548, 639, 798, 1197
BshNI GGYRCC 1 cut(s) 460
BshVI ATCGAT 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 990
BsiSI CCGG 3 cut(s) 464, 545, 554
BslFI GGGAC 2 cut(s) 171, 1032
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 4 cut(s) 72, 199, 409, 613
BsmFI GGGAC 2 cut(s) 171, 1032
BsmI GAATGC 1 cut(s) 1159
BsnI GGCC 6 cut(s) 55, 110, 548, 639, 798, 1197
Bso31I GGTCTC 1 cut(s) 613
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 990
Bsp1407I TGTACA 1 cut(s) 278
Bsp143I GATC 5 cut(s) 176, 238, 319, 342, 578
BspACI CCGC 4 cut(s) 358, 526, 582, 827
BspANI GGCC 6 cut(s) 55, 110, 548, 639, 798, 1197
BspCNI CTCAG 4 cut(s) 623, 668, 857, 1129
BspDI ATCGAT 1 cut(s) 345
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 54, 462
BspPI GGATC 4 cut(s) 184, 233, 327, 573
BspT104I TTCGAA 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 460
BspTNI GGTCTC 1 cut(s) 613
BsrDI GCAATG 2 cut(s) 481, 1101
BsrFI RCCGGY 1 cut(s) 544
BsrGI TGTACA 1 cut(s) 278
BsrI ACTGG 4 cut(s) 87, 640, 879, 1198
BssAI RCCGGY 1 cut(s) 544
BssECI CCNNGG 4 cut(s) 199, 200, 333, 361
BssMI GATC 5 cut(s) 176, 238, 319, 342, 578
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 201, 397
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 3 cut(s) 873, 885, 1128
BstAPI GCANNNNNTGC 2 cut(s) 515, 817
BstAUI TGTACA 1 cut(s) 278
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 7 cut(s) 231, 516, 523, 537, 546, 586, 711
BstDEI CTNAG 8 cut(s) 411, 610, 655, 844, 905, 1042, 1086, 1116
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 392
BstHHI GCGC 1 cut(s) 832
BstKTI GATC 5 cut(s) 179, 241, 322, 345, 581
BstMAI GTCTC 4 cut(s) 72, 199, 409, 613
BstMBI GATC 5 cut(s) 176, 238, 319, 342, 578
BstMWI GCNNNNNNNGC 9 cut(s) 515, 541, 545, 817, 965, 1055, 1100, 1109, 1112
BstNI CCWGG 2 cut(s) 201, 397
BstNSI RCATGY 1 cut(s) 682
BstSCI CCNGG 3 cut(s) 199, 395, 552
BstSFI CTRYAG 1 cut(s) 1053
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 578
BstYI RGATCY 1 cut(s) 578
Bsu15I ATCGAT 1 cut(s) 345
BsuI GTATCC 1 cut(s) 1180
BsuRI GGCC 6 cut(s) 55, 110, 548, 639, 798, 1197
BsuTUI ATCGAT 1 cut(s) 345
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 1 cut(s) 392
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 7 cut(s) 214, 338, 516, 618, 633, 756, 959
Cac8I GCNNGC 7 cut(s) 231, 516, 523, 537, 546, 586, 711
CciI TCATGA 1 cut(s) 322
CfoI GCGC 1 cut(s) 832
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 3 cut(s) 53, 108, 547
ClaI ATCGAT 1 cut(s) 345
Csp6I GTAC 6 cut(s) 279, 293, 669, 872, 937, 1267
CviAII CATG 7 cut(s) 164, 183, 323, 628, 679, 812, 941
CviQI GTAC 6 cut(s) 279, 293, 669, 872, 937, 1267
DdeI CTNAG 8 cut(s) 411, 610, 655, 844, 905, 1042, 1086, 1116
DpnI GATC 5 cut(s) 178, 240, 321, 344, 580
DpnII GATC 5 cut(s) 176, 238, 319, 342, 578
EaeI YGGCCR 1 cut(s) 1195
Eam1104I CTCTTC 3 cut(s) 873, 885, 1128
EarI CTCTTC 3 cut(s) 873, 885, 1128
Ecl136II GAGCTC 1 cut(s) 988
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 990
Eco31I GGTCTC 1 cut(s) 613
Eco53kI GAGCTC 1 cut(s) 988
Eco57I CTGAAG 1 cut(s) 938
EcoICRI GAGCTC 1 cut(s) 988
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 199, 395
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 990
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 7 cut(s) 167, 186, 326, 631, 682, 815, 944
FaqI GGGAC 2 cut(s) 171, 1032
FatI CATG 7 cut(s) 163, 182, 322, 627, 678, 811, 940
FauI CCCGC 1 cut(s) 365
FauNDI CATATG 1 cut(s) 598
FokI GGATG 1 cut(s) 379
FriOI GRGCYC 1 cut(s) 990
FspBI CTAG 1 cut(s) 1022
GlaI GCGC 1 cut(s) 831
HaeIII GGCC 6 cut(s) 55, 110, 548, 639, 798, 1197
HapII CCGG 3 cut(s) 464, 545, 554
HhaI GCGC 1 cut(s) 832
Hin1II CATG 7 cut(s) 167, 186, 326, 631, 682, 815, 944
Hin6I GCGC 1 cut(s) 830
HinP1I GCGC 1 cut(s) 830
HindIII AAGCTT 3 cut(s) 155, 231, 1225
HinfI GANTC 3 cut(s) 560, 761, 773
HpaII CCGG 3 cut(s) 464, 545, 554
HphI GGTGA 2 cut(s) 171, 1030
Hpy166II GTNNAC 3 cut(s) 281, 751, 1267
Hpy188I TCNGA 5 cut(s) 433, 658, 772, 778, 1119
Hpy188III TCNNGA 5 cut(s) 75, 323, 370, 424, 846
Hpy8I GTNNAC 3 cut(s) 281, 751, 1267
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 218, 970
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 747
HpyCH4V TGCA 8 cut(s) 451, 474, 509, 518, 616, 811, 944, 1141
HpyF10VI GCNNNNNNNGC 9 cut(s) 515, 541, 545, 817, 965, 1055, 1100, 1109, 1112
HpyF3I CTNAG 8 cut(s) 411, 610, 655, 844, 905, 1042, 1086, 1116
HpySE526I ACGT 1 cut(s) 747
Hsp92II CATG 7 cut(s) 167, 186, 326, 631, 682, 815, 944
HspAI GCGC 1 cut(s) 830
KroI GCCGGC 1 cut(s) 544
KroNI GCCGGC 1 cut(s) 546
Kzo9I GATC 5 cut(s) 176, 238, 319, 342, 578
LmnI GCTCC 2 cut(s) 913, 993
LweI GCATC 2 cut(s) 375, 776
MaeI CTAG 1 cut(s) 1022
MaeII ACGT 1 cut(s) 747
MaeIII GTNAC 1 cut(s) 124
MalI GATC 5 cut(s) 178, 240, 321, 344, 580
MboI GATC 5 cut(s) 176, 238, 319, 342, 578
MboII GAAGA 9 cut(s) 48, 723, 890, 899, 902, 1022, 1078, 1142, 1145
MflI RGATCY 1 cut(s) 578
MhlI GDGCHC 1 cut(s) 990
MlsI TGGCCA 1 cut(s) 1197
MluCI AATT 7 cut(s) 7, 252, 373, 378, 565, 716, 726
MluNI TGGCCA 1 cut(s) 1197
Mox20I TGGCCA 1 cut(s) 1197
MroNI GCCGGC 1 cut(s) 544
MscI TGGCCA 1 cut(s) 1197
MseI TTAA 3 cut(s) 219, 377, 801
Msp20I TGGCCA 1 cut(s) 1197
MspA1I CMGCKG 1 cut(s) 827
MspI CCGG 3 cut(s) 464, 545, 554
MspR9I CCNGG 3 cut(s) 201, 397, 554
Mva1269I GAATGC 1 cut(s) 1159
MvaI CCWGG 2 cut(s) 201, 397
MwoI GCNNNNNNNGC 9 cut(s) 515, 541, 545, 817, 965, 1055, 1100, 1109, 1112
NaeI GCCGGC 1 cut(s) 546
NciI CCSGG 1 cut(s) 554
NdeI CATATG 1 cut(s) 598
NdeII GATC 5 cut(s) 176, 238, 319, 342, 578
NgoMIV GCCGGC 1 cut(s) 544
NlaIII CATG 7 cut(s) 167, 186, 326, 631, 682, 815, 944
NlaIV GGNNCC 2 cut(s) 54, 462
NmeAIII GCCGAG 2 cut(s) 554, 1009
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 682
NspV TTCGAA 1 cut(s) 11
PagI TCATGA 1 cut(s) 322
PasI CCCWGGG 1 cut(s) 200
PctI GAATGC 1 cut(s) 1159
PdiI GCCGGC 1 cut(s) 546
PfeI GAWTC 3 cut(s) 560, 761, 773
PflFI GACNNNGTC 1 cut(s) 605
PfoI TCCNGGA 1 cut(s) 395
PshBI ATTAAT 1 cut(s) 219
Psp124BI GAGCTC 1 cut(s) 990
Psp6I CCWGG 2 cut(s) 199, 395
PspGI CCWGG 2 cut(s) 199, 395
PspN4I GGNNCC 2 cut(s) 54, 462
PspPI GGNCC 3 cut(s) 53, 108, 547
PsuI RGATCY 1 cut(s) 578
PsyI GACNNNGTC 1 cut(s) 605
RsaI GTAC 6 cut(s) 280, 294, 670, 873, 938, 1268
RsaNI GTAC 6 cut(s) 279, 293, 669, 872, 937, 1267
SacI GAGCTC 1 cut(s) 990
SaqAI TTAA 3 cut(s) 219, 377, 801
Sau3AI GATC 5 cut(s) 176, 238, 319, 342, 578
Sau96I GGNCC 3 cut(s) 53, 108, 547
ScaI AGTACT 2 cut(s) 670, 873
ScrFI CCNGG 3 cut(s) 201, 397, 554
SduI GDGCHC 1 cut(s) 990
SfaNI GCATC 2 cut(s) 375, 776
SfcI CTRYAG 1 cut(s) 1053
SfuI TTCGAA 1 cut(s) 11
SmlI CTYRAG 2 cut(s) 171, 314
SmoI CTYRAG 2 cut(s) 171, 314
Sse9I AATT 7 cut(s) 7, 252, 373, 378, 565, 716, 726
SsiI CCGC 4 cut(s) 358, 526, 582, 827
SspMI CTAG 1 cut(s) 1022
SstI GAGCTC 1 cut(s) 990
StyD4I CCNGG 3 cut(s) 199, 395, 552
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 750
TaqI TCGA 3 cut(s) 11, 345, 792
TasI AATT 7 cut(s) 7, 252, 373, 378, 565, 716, 726
TatI WGTACW 4 cut(s) 278, 668, 871, 1266
TauI GCSGC 2 cut(s) 528, 830
TfiI GAWTC 3 cut(s) 560, 761, 773
Tru1I TTAA 3 cut(s) 219, 377, 801
Tru9I TTAA 3 cut(s) 219, 377, 801
TscAI CASTG 7 cut(s) 214, 345, 516, 618, 640, 763, 966
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 7 cut(s) 237, 381, 828, 911, 1019, 1086, 1223
TspRI CASTG 7 cut(s) 214, 345, 516, 618, 640, 763, 966
Tth111I GACNNNGTC 1 cut(s) 605
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 4 cut(s) 7, 252, 373, 726
XceI RCATGY 1 cut(s) 682
XspI CTAG 1 cut(s) 1022
ZrmI AGTACT 2 cut(s) 670, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.