MD13G1233300.v1.1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0014277
Physical Location & Seq
Forward (+)
23305320 .. 23308618
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1233300.v1.1.491

Sequence Viewer

Length: 1044 bp
ATGGGAAGAGGTCAAACACAAAAGAAGGCGGGGGAGGTGGTGGCTGTAGCAATAGACAATGACAAGGGCAGCCAACATGCTCTCAAATGGACTATTGATAGTCTTGTCACCAGAGGTCAAGCTCTCACGCTGCTCCAAGTTAGACAAATAACCGCAATTCCCACGCAAACCACAAAGGAGGTTGAAAAGGCTCAAGCCAAAGAGTTGTTTCAACCATTCCGCTGCTTTTGCACGAAAAAACTTCTAAAATGCAATGAAGTCATGATCAAGGATAAAAACATAGCAAAAGCACTGGTAAACTATGTTGTCAATAATTCAATCGACATTTTGGTACTTGGTGCGCCGTCGAGAAGCGGCCTTCTCAGATTCAAAACAACAGACGTTCCAAACACCGTCTCAAAAGAGGCACCGAGTTTCTGCACTGTGTATGTCGTTGGCAAGGGAAAGATATCATATATGCCAGCTGCTACCACTTCACTGTCCCAGGCAGCTTACTTGCCTAATCAAAAACAGCACCAAACAAACAAAGCTTCTGACACAAATGATACGCAATTCAGCCACAACCAGCAATGCAGAGGTTGGCCAGATTCGGATGAATTGGAAGCTGAGATGAGGAGGCTCAGGCTAGAGCTCAAGCAAACAATGGACATGTACAGTACAGCCTGCAAGGAGGCACTCACAGCAAAACAGAAGGCAACCGAACTCCACCGGTGGAAATTGGAAGAGGAACAGAGATTAGAACAGGTACGATTAGCTCAGGAAGCTGCATTGGCACTTGCAGAGAATGAGAAATTGAAATGTATGGCAGCCATGGAGGCTGCAGAAGCAGCTCAAAGGATCGCAGTAATGGAAGCACAGAAAAGGAGGAATGCAGAAATGAAAGCCTTTAAAGAAGCTGAGGAGAAGAAGAAGGCAATAGAAGCAAAAACATATGATTTCATGTTCAGGAAATACACAATTGAGGAGATTGAAGCAGCAACAAATAATTTTTCAAGAGAGAAACCGACCTTGCGTGCCAAGGCTCGATTTTGTGAATGGGATTGA

Protein Analysis

348

Amino Acids

39.3

Weight (kDa)

9.15

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 14 - 143 8.8e-10 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20310
malus_domestica MD13G1232700.v1.1 MD13G1233300.v1.1 MD16G1238300.v1.1
prunus_persica Prupe.1G064200_v2.0.a1
pyrus_communis pycom13g20550
rosa_chinensis RchiOBHm_Chr4g0397631
rosa_laevigata RLG00000009422
rosa_multiflora Rmu_co8218642.1_g000001 Rmu_sc0002729.1_g000005
rosa_roxburghii Rroxscaffold_5G00342440
rosa_rugosa Rorug03G0342200
rosa_samantha Rh4AG079500 Rh4BG077500 Rh4CG085400 Rh4DG072500
rosa_wichuraiana Rw4G006510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 406
AciI CCGC 4 cut(s) 29, 153, 220, 354
AclWI GGATC 1 cut(s) 845
AcoI YGGCCR 1 cut(s) 581
AfaI GTAC 4 cut(s) 333, 653, 658, 747
AflIII ACRYGT 1 cut(s) 648
AgeI ACCGGT 1 cut(s) 708
AgsI TTSAA 7 cut(s) 185, 212, 318, 370, 796, 971, 993
AjnI CCWGG 1 cut(s) 483
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 1 cut(s) 845
AoxI GGCC 2 cut(s) 355, 581
AsiGI ACCGGT 1 cut(s) 708
AspLEI GCGC 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 100
BalI TGGCCA 1 cut(s) 583
BanI GGYRCC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 633
Bbv12I GWGCWC 1 cut(s) 633
BbvCI CCTCAGC 1 cut(s) 897
BceAI ACGGC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 485
BclI TGATCA 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 2 cut(s) 45, 819
BglI GCCNNNNNGGC 1 cut(s) 815
Bme1390I CCNGG 1 cut(s) 485
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 485
Bpu10I CCTNAGC 3 cut(s) 620, 756, 897
BpuEI CTTGAG 2 cut(s) 177, 617
BsaJI CCNNGG 3 cut(s) 483, 810, 1017
BsaWI WCCGGW 1 cut(s) 708
Bse118I RCCGGY 1 cut(s) 708
Bse1I ACTGG 1 cut(s) 297
Bse3DI GCAATG 2 cut(s) 259, 575
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 3 cut(s) 483, 810, 1017
BseGI GGATG 1 cut(s) 598
BseMI GCAATG 2 cut(s) 259, 575
BseMII CTCAG 5 cut(s) 376, 597, 634, 770, 888
BseNI ACTGG 1 cut(s) 297
BseRI GAGGAG 3 cut(s) 628, 914, 977
BsgI GTGCAG 1 cut(s) 403
BshFI GGCC 2 cut(s) 357, 583
BshNI GGYRCC 1 cut(s) 406
BshTI ACCGGT 1 cut(s) 708
BsiHKAI GWGCWC 1 cut(s) 633
BsiSI CCGG 1 cut(s) 709
BslFI GGGAC 1 cut(s) 466
BsmAI GTCTC 1 cut(s) 400
BsmBI CGTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 874
BsnI GGCC 2 cut(s) 357, 583
Bsp1286I GDGCHC 1 cut(s) 633
Bsp1407I TGTACA 1 cut(s) 651
Bsp143I GATC 2 cut(s) 264, 837
Bsp19I CCATGG 1 cut(s) 810
BspACI CCGC 4 cut(s) 29, 153, 220, 354
BspANI GGCC 2 cut(s) 357, 583
BspCNI CTCAG 5 cut(s) 375, 598, 633, 769, 889
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 408
BspMAI CTGCAG 1 cut(s) 823
BspPI GGATC 1 cut(s) 845
BspT107I GGYRCC 1 cut(s) 406
BsrDI GCAATG 2 cut(s) 259, 575
BsrFI RCCGGY 1 cut(s) 708
BsrGI TGTACA 1 cut(s) 651
BsrI ACTGG 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 708
BssECI CCNNGG 3 cut(s) 483, 810, 1017
BssMI GATC 2 cut(s) 264, 837
BssT1I CCWWGG 2 cut(s) 810, 1017
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 4 cut(s) 394, 424, 480, 656
Bst6I CTCTTC 1 cut(s) 717
BstAUI TGTACA 1 cut(s) 651
BstC8I GCNNGC 3 cut(s) 462, 664, 1014
BstDEI CTNAG 5 cut(s) 362, 606, 620, 756, 897
BstDSI CCRYGG 1 cut(s) 810
BstF5I GGATG 1 cut(s) 598
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 2 cut(s) 267, 840
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 2 cut(s) 264, 837
BstMWI GCNNNNNNNGC 8 cut(s) 228, 680, 761, 770, 815, 824, 827, 920
BstNI CCWGG 1 cut(s) 485
BstNSI RCATGY 2 cut(s) 80, 652
BstSCI CCNGG 1 cut(s) 483
BstSFI CTRYAG 2 cut(s) 45, 819
BsuRI GGCC 2 cut(s) 357, 583
BtgI CCRYGG 1 cut(s) 810
BtsCI GGATG 1 cut(s) 598
BtsIMutI CAGTG 3 cut(s) 290, 420, 476
Cac8I GCNNGC 3 cut(s) 462, 664, 1014
CciI TCATGA 1 cut(s) 261
CfoI GCGC 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 708
Csp6I GTAC 4 cut(s) 332, 652, 657, 746
CspAI ACCGGT 1 cut(s) 708
CviAII CATG 5 cut(s) 77, 262, 649, 811, 940
CviQI GTAC 4 cut(s) 332, 652, 657, 746
DdeI CTNAG 5 cut(s) 362, 606, 620, 756, 897
DpnI GATC 2 cut(s) 266, 839
DpnII GATC 2 cut(s) 264, 837
DraI TTTAAA 1 cut(s) 889
EaeI YGGCCR 1 cut(s) 581
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
Ecl136II GAGCTC 1 cut(s) 631
Eco130I CCWWGG 2 cut(s) 810, 1017
Eco24I GRGCYC 1 cut(s) 633
Eco32I GATATC 1 cut(s) 450
Eco53kI GAGCTC 1 cut(s) 631
EcoICRI GAGCTC 1 cut(s) 631
EcoRII CCWGG 1 cut(s) 483
EcoRV GATATC 1 cut(s) 450
EcoT14I CCWWGG 2 cut(s) 810, 1017
EcoT38I GRGCYC 1 cut(s) 633
ErhI CCWWGG 2 cut(s) 810, 1017
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 5 cut(s) 80, 265, 652, 814, 943
FaqI GGGAC 1 cut(s) 466
FatI CATG 5 cut(s) 76, 261, 648, 810, 939
FauI CCCGC 1 cut(s) 22
FauNDI CATATG 1 cut(s) 931
FbaI TGATCA 1 cut(s) 264
FokI GGATG 1 cut(s) 605
FriOI GRGCYC 1 cut(s) 633
FspBI CTAG 1 cut(s) 626
GlaI GCGC 1 cut(s) 342
HaeIII GGCC 2 cut(s) 357, 583
HapII CCGG 1 cut(s) 709
HhaI GCGC 1 cut(s) 343
Hin1II CATG 5 cut(s) 80, 265, 652, 814, 943
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 2 cut(s) 366, 587
HpaII CCGG 1 cut(s) 709
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 3 cut(s) 365, 535, 592
Hpy188III TCNNGA 5 cut(s) 262, 348, 758, 946, 993
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 4 cut(s) 19, 368, 685, 904
HpyCH4III ACNGT 4 cut(s) 394, 424, 480, 656
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 9 cut(s) 231, 252, 420, 573, 666, 767, 779, 821, 872
HpyF10VI GCNNNNNNNGC 8 cut(s) 228, 680, 761, 770, 815, 824, 827, 920
HpyF3I CTNAG 5 cut(s) 362, 606, 620, 756, 897
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 5 cut(s) 80, 265, 652, 814, 943
HspAI GCGC 1 cut(s) 341
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 2 cut(s) 264, 837
LmnI GCTCC 1 cut(s) 138
MaeI CTAG 1 cut(s) 626
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 266, 839
MboI GATC 2 cut(s) 264, 837
MboII GAAGA 4 cut(s) 18, 734, 916, 919
MfeI CAATTG 1 cut(s) 957
MhlI GDGCHC 1 cut(s) 633
MlsI TGGCCA 1 cut(s) 583
MluCI AATT 8 cut(s) 156, 313, 551, 596, 716, 791, 957, 985
MluNI TGGCCA 1 cut(s) 583
Mox20I TGGCCA 1 cut(s) 583
MscI TGGCCA 1 cut(s) 583
MseI TTAA 1 cut(s) 888
Msp20I TGGCCA 1 cut(s) 583
MspA1I CMGCKG 2 cut(s) 222, 464
MspI CCGG 1 cut(s) 709
MspR9I CCNGG 1 cut(s) 485
MunI CAATTG 1 cut(s) 957
Mva1269I GAATGC 1 cut(s) 874
MvaI CCWGG 1 cut(s) 485
MwoI GCNNNNNNNGC 8 cut(s) 228, 680, 761, 770, 815, 824, 827, 920
NcoI CCATGG 1 cut(s) 810
NdeI CATATG 1 cut(s) 931
NdeII GATC 2 cut(s) 264, 837
NlaIII CATG 5 cut(s) 80, 265, 652, 814, 943
NlaIV GGNNCC 1 cut(s) 408
NmuCI GTSAC 1 cut(s) 106
NspI RCATGY 2 cut(s) 80, 652
PagI TCATGA 1 cut(s) 261
PciI ACATGT 1 cut(s) 648
PctI GAATGC 1 cut(s) 874
PfeI GAWTC 2 cut(s) 366, 587
PinAI ACCGGT 1 cut(s) 708
PscI ACATGT 1 cut(s) 648
Psp124BI GAGCTC 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 1 cut(s) 408
PstI CTGCAG 1 cut(s) 823
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 4 cut(s) 333, 653, 658, 747
RsaNI GTAC 4 cut(s) 332, 652, 657, 746
SacI GAGCTC 1 cut(s) 633
SaqAI TTAA 1 cut(s) 888
Sau3AI GATC 2 cut(s) 264, 837
ScrFI CCNGG 1 cut(s) 485
SduI GDGCHC 1 cut(s) 633
SfcI CTRYAG 2 cut(s) 45, 819
SgrAI CRCCGGYG 1 cut(s) 708
SmlI CTYRAG 2 cut(s) 192, 632
SmoI CTYRAG 2 cut(s) 192, 632
Sse9I AATT 8 cut(s) 156, 313, 551, 596, 716, 791, 957, 985
SsiI CCGC 4 cut(s) 29, 153, 220, 354
SspMI CTAG 1 cut(s) 626
SstI GAGCTC 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 483
StyI CCWWGG 2 cut(s) 810, 1017
TaaI ACNGT 4 cut(s) 394, 424, 480, 656
TaiI ACGT 1 cut(s) 384
TaqI TCGA 3 cut(s) 321, 347, 1024
TasI AATT 8 cut(s) 156, 313, 551, 596, 716, 791, 957, 985
TatI WGTACW 2 cut(s) 651, 656
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 2 cut(s) 366, 587
Tru1I TTAA 1 cut(s) 888
Tru9I TTAA 1 cut(s) 888
TscAI CASTG 3 cut(s) 297, 427, 483
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 4 cut(s) 270, 609, 893, 928
TspRI CASTG 3 cut(s) 297, 427, 483
XceI RCATGY 2 cut(s) 80, 652
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.