Rorug03G0342200

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014277
Physical Location & Seq
Reverse (-)
41163380 .. 41166823
3444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0342200.1

Sequence Viewer

Length: 1206 bp
ATGGGTATCAAAGTGTTGGTGGTATCTCTGTTGCTAACTTCAATTGTTTTCTCTTTTCTGTACTTCATTCCAACCAGATTAACAATACCCATTCACAGTTGGAAGCCCATCATCAATCTGACCAAATCCAACATGAGTATTACTAAGCCATATCCAGTGACCTTTTCATATCTGATCTCAGCTTCAAAAGGCGATTCGCTGAAGCTCAAACGCATGCTCTATGCTCTTTATCATCCTGGAAATTACTATCTGATCCACATGGATTATGAAGCAACGGAGGCAGAGCACAGAGACATAGCTGAGTTTGTGGGTGGAAATCCAGTTTTTGGGGAAGTGGGTAATGTTTGGATTGTGGGAAAACCCAATTTGGTAACCTATAGAGGACCAACCATGCTTGCTACCACTATTCATGCTTTGGCTTTGCTCTTGAGGACTTGCAGATGGGATTGGTTCATCAATCTCAGTGCTTCTGACTACCCTCTAATTACTCAAGATGATCTGATCCATGCCTTTTCTGACTTGCCAAGAGATCTCAATTTCATTCAGCACTCCAGTCACTTGGGTTGGAAACTGAATAAGAGAGGCAAGCCCATTACAATAGACCCAGCACTCTACAGCCTCAATAAATCAGAATTATGGTGGGTTATTAAACAAAGGGCTCTCCCAACTGCTTTCAAGCTATACACAGGTTCAGCTTGGACAATGATATCAAGATCTTTTGCCGAGTATTGCGTACTGGGTTGGGACAATCTGCCCAGAACCCTCCTCCTCTACTACACCAACTTCGTCTCATCTCCGGAAGGTTACTTCCAGACTGTCATTTGCAACTCAGAAGACTACAAAAACACCACAATCAACCATGACCTCCACTACATTTCATGGGATACACCTCCAAAGCAGCATCCCAGGTCTCTCGGACTCAGAGACTTTAAAAGAATGGTTCAAAGCAACCGTCCATTTGCTAGAAAGTTCAAGCAAAATGCCCCGGTGCTTAAAAAAATTGATCAACAACTGCTTAAACGACGCCGTGGAGAATTTGCTTATGGTGGATGGTGTTCGGGGAAAGAAAAGACGCAGAGGTCATGCTCAGGTTTGCAGAGTGAAAATTATGGAGTTTTAAGGCCAGGACCCGGATCTAGGAGGTTGAAGTCCTTGTTAACAAAACTCCTTTCCACGCGGAATCATCAGAAGCAACAGTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

401

Amino Acids

46.22

Weight (kDa)

9.78

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 56 - 313 1.8e-72 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20310
malus_domestica MD13G1232700.v1.1 MD13G1233300.v1.1 MD16G1238300.v1.1
prunus_persica Prupe.1G064200_v2.0.a1
pyrus_communis pycom13g20550
rosa_chinensis RchiOBHm_Chr4g0397631
rosa_laevigata RLG00000009422
rosa_multiflora Rmu_co8218642.1_g000001 Rmu_sc0002729.1_g000005
rosa_roxburghii Rroxscaffold_5G00342440
rosa_rugosa Rorug03G0342200
rosa_samantha Rh4AG079500 Rh4BG077500 Rh4CG085400 Rh4DG072500
rosa_wichuraiana Rw4G006510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1078
AccB7I CCANNNNNTGG 1 cut(s) 326
AccII CGCG 1 cut(s) 1177
AccIII TCCGGA 1 cut(s) 796
AciI CCGC 1 cut(s) 1177
AclWI GGATC 3 cut(s) 247, 496, 1141
AcsI RAATTY 1 cut(s) 1034
AcuI CTGAAG 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 1024
AfaI GTAC 2 cut(s) 62, 735
AfiI CCNNNNNNNGG 3 cut(s) 326, 1130, 1137
AgsI TTSAA 6 cut(s) 42, 186, 676, 944, 973, 1147
AjnI CCWGG 3 cut(s) 235, 905, 1123
AluBI AGCT 5 cut(s) 182, 205, 299, 679, 695
AluI AGCT 5 cut(s) 182, 205, 299, 679, 695
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 4 cut(s) 285, 793, 915, 918
AlwI GGATC 3 cut(s) 247, 496, 1141
Aor13HI TCCGGA 1 cut(s) 796
AoxI GGCC 1 cut(s) 1121
ApeKI GCWGC 1 cut(s) 898
ApoI RAATTY 1 cut(s) 1034
ArsI GACNNNNNNTTYG 2 cut(s) 937, 969
AspS9I GGNCC 2 cut(s) 383, 1127
AsuC2I CCSGG 2 cut(s) 986, 1131
AvaII GGWCC 2 cut(s) 383, 1127
BanII GRGCYC 1 cut(s) 661
BbsI GAAGAC 1 cut(s) 840
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 910
BccI CCATC 3 cut(s) 116, 435, 1044
BceAI ACGGC 1 cut(s) 1011
BciT130I CCWGG 3 cut(s) 237, 907, 1125
BciVI GTATCC 1 cut(s) 877
BclI TGATCA 1 cut(s) 1003
BcnI CCSGG 2 cut(s) 986, 1131
BcoDI GTCTC 4 cut(s) 285, 793, 915, 918
BfaI CTAG 2 cut(s) 963, 1137
BfmI CTRYAG 2 cut(s) 376, 613
BfuI GTATCC 1 cut(s) 877
BglII AGATCT 2 cut(s) 529, 713
BisI GCNGC 1 cut(s) 899
BlsI GCNGC 1 cut(s) 900
Bme1390I CCNGG 5 cut(s) 237, 907, 986, 1125, 1131
Bme18I GGWCC 2 cut(s) 383, 1127
BmgT120I GGNCC 2 cut(s) 383, 1127
BmiI GGNNCC 1 cut(s) 1129
BmrFI CCNGG 5 cut(s) 237, 907, 986, 1125, 1131
BmrI ACTGGG 1 cut(s) 746
BmsI GCATC 1 cut(s) 910
BmuI ACTGGG 1 cut(s) 746
BpiI GAAGAC 1 cut(s) 840
BpmI CTGGAG 1 cut(s) 535
Bpu10I CCTNAGC 1 cut(s) 1087
BpuEI CTTGAG 2 cut(s) 448, 474
BpuMI CCSGG 2 cut(s) 986, 1131
BsaHI GRCGYC 1 cut(s) 1024
BsaI GGTCTC 1 cut(s) 915
BsaJI CCNNGG 3 cut(s) 905, 984, 1027
BsaWI WCCGGW 1 cut(s) 796
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 1130, 1137
Bse1I ACTGG 4 cut(s) 155, 320, 552, 741
BseAI TCCGGA 1 cut(s) 796
BseBI CCWGG 3 cut(s) 237, 907, 1125
BseDI CCNNGG 3 cut(s) 905, 984, 1027
BseGI GGATG 3 cut(s) 232, 901, 1055
BseLI CCNNNNNNNGG 3 cut(s) 326, 1130, 1137
BseMII CTCAG 6 cut(s) 192, 291, 475, 843, 934, 1101
BseNI ACTGG 4 cut(s) 155, 320, 552, 741
BseRI GAGGAG 2 cut(s) 755, 758
BseXI GCAGC 1 cut(s) 910
BseYI CCCAGC 1 cut(s) 604
Bsh1236I CGCG 1 cut(s) 1177
BshFI GGCC 1 cut(s) 1123
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 3 cut(s) 797, 986, 1131
BslFI GGGAC 1 cut(s) 758
BslI CCNNNNNNNGG 3 cut(s) 326, 1130, 1137
BsmAI GTCTC 4 cut(s) 285, 793, 915, 918
BsmBI CGTCTC 1 cut(s) 793
BsmFI GGGAC 1 cut(s) 758
BsnI GGCC 1 cut(s) 1123
Bso31I GGTCTC 1 cut(s) 915
Bsp1286I GDGCHC 2 cut(s) 288, 661
Bsp13I TCCGGA 1 cut(s) 796
Bsp143I GATC 8 cut(s) 174, 252, 496, 501, 529, 713, 1003, 1133
BspACI CCGC 1 cut(s) 1177
BspANI GGCC 1 cut(s) 1123
BspCNI CTCAG 6 cut(s) 191, 292, 474, 842, 933, 1100
BspEI TCCGGA 1 cut(s) 796
BspFNI CGCG 1 cut(s) 1177
BspLI GGNNCC 1 cut(s) 1129
BspPI GGATC 3 cut(s) 247, 496, 1141
BspTNI GGTCTC 1 cut(s) 915
BsrI ACTGG 4 cut(s) 155, 320, 552, 741
BssECI CCNNGG 3 cut(s) 905, 984, 1027
BssMI GATC 8 cut(s) 174, 252, 496, 501, 529, 713, 1003, 1133
BssNI GRCGYC 1 cut(s) 1024
Bst2UI CCWGG 3 cut(s) 237, 907, 1125
Bst4CI ACNGT 4 cut(s) 98, 817, 953, 1197
BstACI GRCGYC 1 cut(s) 1024
BstC8I GCNNGC 3 cut(s) 215, 396, 587
BstDEI CTNAG 7 cut(s) 144, 178, 300, 461, 829, 920, 1087
BstDSI CCRYGG 1 cut(s) 1027
BstEII GGTNACC 1 cut(s) 370
BstF5I GGATG 3 cut(s) 232, 901, 1055
BstFNI CGCG 1 cut(s) 1177
BstKTI GATC 8 cut(s) 177, 255, 499, 504, 532, 716, 1006, 1136
BstMAI GTCTC 4 cut(s) 285, 793, 915, 918
BstMBI GATC 8 cut(s) 174, 252, 496, 501, 529, 713, 1003, 1133
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 3 cut(s) 237, 907, 1125
BstNSI RCATGY 1 cut(s) 217
BstPI GGTNACC 1 cut(s) 370
BstSCI CCNGG 5 cut(s) 235, 905, 984, 1123, 1129
BstSFI CTRYAG 2 cut(s) 376, 613
BstUI CGCG 1 cut(s) 1177
BstV1I GCAGC 1 cut(s) 910
BstV2I GAAGAC 1 cut(s) 840
BstX2I RGATCY 3 cut(s) 529, 713, 1133
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 3 cut(s) 529, 713, 1133
BsuI GTATCC 1 cut(s) 877
BsuRI GGCC 1 cut(s) 1123
BtgI CCRYGG 1 cut(s) 1027
BtsCI GGATG 3 cut(s) 232, 901, 1055
BtsIMutI CAGTG 3 cut(s) 162, 469, 1202
Cac8I GCNNGC 3 cut(s) 215, 396, 587
Cfr13I GGNCC 2 cut(s) 383, 1127
CseI GACGC 2 cut(s) 1032, 1081
Csp6I GTAC 2 cut(s) 61, 734
CviAII CATG 9 cut(s) 133, 214, 259, 391, 410, 506, 860, 879, 1083
CviQI GTAC 2 cut(s) 61, 734
DdeI CTNAG 7 cut(s) 144, 178, 300, 461, 829, 920, 1087
DpnI GATC 8 cut(s) 176, 254, 498, 503, 531, 715, 1005, 1135
DpnII GATC 8 cut(s) 174, 252, 496, 501, 529, 713, 1003, 1133
DraI TTTAAA 1 cut(s) 931
DrdI GACNNNNNNGTC 1 cut(s) 1078
DseDI GACNNNNNNGTC 1 cut(s) 1078
Eco24I GRGCYC 1 cut(s) 661
Eco31I GGTCTC 1 cut(s) 915
Eco32I GATATC 1 cut(s) 708
Eco47I GGWCC 2 cut(s) 383, 1127
Eco57I CTGAAG 1 cut(s) 221
Eco91I GGTNACC 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 1127
EcoO65I GGTNACC 1 cut(s) 370
EcoRII CCWGG 3 cut(s) 235, 905, 1123
EcoRV GATATC 1 cut(s) 708
EcoT38I GRGCYC 1 cut(s) 661
Esp3I CGTCTC 1 cut(s) 793
FaeI CATG 9 cut(s) 136, 217, 262, 394, 413, 509, 863, 882, 1086
FaqI GGGAC 1 cut(s) 758
FatI CATG 9 cut(s) 132, 213, 258, 390, 409, 505, 859, 878, 1082
FbaI TGATCA 1 cut(s) 1003
Fnu4HI GCNGC 1 cut(s) 899
FokI GGATG 3 cut(s) 219, 888, 1062
FriOI GRGCYC 1 cut(s) 661
Fsp4HI GCNGC 1 cut(s) 899
FspBI CTAG 2 cut(s) 963, 1137
GluI GCNGC 1 cut(s) 899
GsaI CCCAGC 1 cut(s) 608
GsuI CTGGAG 1 cut(s) 535
HaeIII GGCC 1 cut(s) 1123
HapII CCGG 3 cut(s) 797, 986, 1131
HgaI GACGC 2 cut(s) 1032, 1081
Hin1I GRCGYC 1 cut(s) 1024
Hin1II CATG 9 cut(s) 136, 217, 262, 394, 413, 509, 863, 882, 1086
HincII GTYRAC 1 cut(s) 1158
HindII GTYRAC 1 cut(s) 1158
HinfI GANTC 3 cut(s) 194, 918, 1180
HpaI GTTAAC 1 cut(s) 1158
HpaII CCGG 3 cut(s) 797, 986, 1131
Hpy166II GTNNAC 1 cut(s) 1158
Hpy188III TCNNGA 5 cut(s) 427, 491, 711, 797, 811
Hpy8I GTNNAC 1 cut(s) 1158
Hpy99I CGWCG 1 cut(s) 1026
HpyAV CCTTC 1 cut(s) 794
HpyCH4III ACNGT 4 cut(s) 98, 817, 953, 1197
HpyCH4V TGCA 4 cut(s) 438, 825, 1096, 1200
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 7 cut(s) 144, 178, 300, 461, 829, 920, 1087
Hsp92I GRCGYC 1 cut(s) 1024
Hsp92II CATG 9 cut(s) 136, 217, 262, 394, 413, 509, 863, 882, 1086
Kpn2I TCCGGA 1 cut(s) 796
Ksp22I TGATCA 1 cut(s) 1003
KspAI GTTAAC 1 cut(s) 1158
Kzo9I GATC 8 cut(s) 174, 252, 496, 501, 529, 713, 1003, 1133
Lsp1109I GCAGC 1 cut(s) 910
LweI GCATC 1 cut(s) 910
MaeI CTAG 2 cut(s) 963, 1137
MaeIII GTNAC 4 cut(s) 157, 370, 554, 803
MalI GATC 8 cut(s) 176, 254, 498, 503, 531, 715, 1005, 1135
MboI GATC 8 cut(s) 174, 252, 496, 501, 529, 713, 1003, 1133
MboII GAAGA 1 cut(s) 845
MfeI CAATTG 1 cut(s) 42
MflI RGATCY 3 cut(s) 529, 713, 1133
MhlI GDGCHC 2 cut(s) 288, 661
MluCI AATT 9 cut(s) 42, 241, 364, 483, 535, 632, 999, 1034, 1105
MlyI GAGTC 1 cut(s) 912
MmeI TCCRAC 4 cut(s) 80, 95, 153, 545
MroI TCCGGA 1 cut(s) 796
MseI TTAA 7 cut(s) 80, 648, 930, 993, 1017, 1118, 1157
MspI CCGG 3 cut(s) 797, 986, 1131
MspR9I CCNGG 5 cut(s) 237, 907, 986, 1125, 1131
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 3 cut(s) 237, 907, 1125
MvnI CGCG 1 cut(s) 1177
MwoI GCNNNNNNNGC 1 cut(s) 278
NciI CCSGG 2 cut(s) 986, 1131
NdeII GATC 8 cut(s) 174, 252, 496, 501, 529, 713, 1003, 1133
NlaIII CATG 9 cut(s) 136, 217, 262, 394, 413, 509, 863, 882, 1086
NlaIV GGNNCC 1 cut(s) 1129
NmeAIII GCCGAG 1 cut(s) 748
NmuCI GTSAC 2 cut(s) 157, 554
NspI RCATGY 1 cut(s) 217
PaeI GCATGC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 194, 1180
PflMI CCANNNNNTGG 1 cut(s) 326
PfoI TCCNGGA 1 cut(s) 235
PkrI GCNGC 1 cut(s) 900
PleI GAGTC 1 cut(s) 912
PpsI GAGTC 1 cut(s) 912
PpuMI RGGWCCY 1 cut(s) 1127
Psp5II RGGWCCY 1 cut(s) 1127
Psp6I CCWGG 3 cut(s) 235, 905, 1123
PspEI GGTNACC 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 604
PspGI CCWGG 3 cut(s) 235, 905, 1123
PspN4I GGNNCC 1 cut(s) 1129
PspPI GGNCC 2 cut(s) 383, 1127
PspPPI RGGWCCY 1 cut(s) 1127
PsuI RGATCY 3 cut(s) 529, 713, 1133
RsaI GTAC 2 cut(s) 62, 735
RsaNI GTAC 2 cut(s) 61, 734
SaqAI TTAA 7 cut(s) 80, 648, 930, 993, 1017, 1118, 1157
SatI GCNGC 1 cut(s) 899
Sau3AI GATC 8 cut(s) 174, 252, 496, 501, 529, 713, 1003, 1133
Sau96I GGNCC 2 cut(s) 383, 1127
SchI GAGTC 1 cut(s) 912
ScrFI CCNGG 5 cut(s) 237, 907, 986, 1125, 1131
SduI GDGCHC 2 cut(s) 288, 661
SfaNI GCATC 1 cut(s) 910
SfcI CTRYAG 2 cut(s) 376, 613
SinI GGWCC 2 cut(s) 383, 1127
SmlI CTYRAG 2 cut(s) 427, 489
SmoI CTYRAG 2 cut(s) 427, 489
SphI GCATGC 1 cut(s) 217
Sse9I AATT 9 cut(s) 42, 241, 364, 483, 535, 632, 999, 1034, 1105
SsiI CCGC 1 cut(s) 1177
SspMI CTAG 2 cut(s) 963, 1137
StyD4I CCNGG 5 cut(s) 235, 905, 984, 1123, 1129
TaaI ACNGT 4 cut(s) 98, 817, 953, 1197
TasI AATT 9 cut(s) 42, 241, 364, 483, 535, 632, 999, 1034, 1105
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 2 cut(s) 194, 1180
Tru1I TTAA 7 cut(s) 80, 648, 930, 993, 1017, 1118, 1157
Tru9I TTAA 7 cut(s) 80, 648, 930, 993, 1017, 1118, 1157
TscAI CASTG 3 cut(s) 162, 469, 1202
TseFI GTSAC 2 cut(s) 157, 554
TseI GCWGC 1 cut(s) 898
Tsp45I GTSAC 2 cut(s) 157, 554
TspDTI ATGAA 7 cut(s) 55, 156, 282, 398, 442, 529, 867
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 3 cut(s) 162, 469, 1202
Van91I CCANNNNNTGG 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 383, 1127
XapI RAATTY 1 cut(s) 1034
XceI RCATGY 1 cut(s) 217
XspI CTAG 2 cut(s) 963, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.